Wall clock time and date at job start Tue Mar 31 2020 14:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42896 * 109.47361 * 2 1 4 4 C 1.35729 * 117.00407 * 179.97438 * 3 2 1 5 5 C 1.41857 * 126.79248 * 180.02562 * 4 3 2 6 6 C 1.36664 * 103.81651 * 179.97438 * 5 4 3 7 7 C 1.47542 * 126.87899 * 179.97438 * 6 5 4 8 8 O 1.21577 * 119.99789 * 353.57381 * 7 6 5 9 9 N 1.34771 * 119.99685 * 173.57460 * 7 6 5 10 10 C 1.46928 * 120.63232 * 354.89506 * 9 7 6 11 11 C 1.53193 * 108.77191 * 126.36847 * 10 9 7 12 12 C 1.53044 * 109.31378 * 54.63793 * 11 10 9 13 13 H 1.08998 * 109.45841 * 178.62216 * 12 11 10 14 14 N 1.46501 * 109.45892 * 58.65454 * 12 11 10 15 15 C 1.36928 * 120.00475 * 85.00186 * 14 12 11 16 16 H 1.07999 * 120.00125 * 359.97438 * 15 14 12 17 17 C 1.38813 * 120.00300 * 179.97438 * 15 14 12 18 18 N 1.31616 * 120.00139 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 119.99792 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47155 * 269.99821 * 19 17 15 21 21 H 1.48500 * 109.47225 * 30.00028 * 19 17 15 22 22 H 1.48500 * 109.47277 * 149.99766 * 19 17 15 23 23 C 1.53034 * 109.53502 * 298.63271 * 12 11 10 24 24 H 1.09000 * 109.49875 * 301.41062 * 23 12 11 25 25 C 1.52998 * 109.49723 * 181.32012 * 23 12 11 26 26 C 1.46923 * 120.62843 * 174.87149 * 9 7 6 27 27 O 1.34662 * 106.23976 * 0.23978 * 6 5 4 28 28 N 1.20883 * 111.62872 * 359.56552 * 27 6 5 29 29 H 1.08996 * 109.47351 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47338 * 300.00429 * 1 2 3 31 31 H 1.09001 * 109.47075 * 60.00155 * 1 2 3 32 32 H 1.09003 * 109.47338 * 239.99571 * 2 1 3 33 33 H 1.09001 * 109.47075 * 119.99844 * 2 1 3 34 34 H 1.08002 * 128.08716 * 359.97438 * 5 4 3 35 35 H 1.09000 * 109.58868 * 6.58566 * 10 9 7 36 36 H 1.08998 * 109.70598 * 246.22528 * 10 9 7 37 37 H 1.08997 * 109.50353 * 294.68208 * 11 10 9 38 38 H 1.09007 * 109.49407 * 174.58364 * 11 10 9 39 39 H 0.97003 * 119.99355 * 264.99951 * 14 12 11 40 40 H 0.97003 * 120.00300 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.47654 * 59.99616 * 25 23 12 42 42 H 1.08999 * 109.47436 * 179.97438 * 25 23 12 43 43 H 1.09007 * 109.47140 * 299.99951 * 25 23 12 44 44 H 1.09005 * 109.58984 * 353.41716 * 26 9 7 45 45 H 1.09001 * 109.58671 * 113.84299 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3519 1.5251 0.0005 5 6 4.0453 2.7626 0.0012 6 6 5.3626 2.3987 0.0021 7 6 6.5303 3.3004 0.0025 8 8 6.3720 4.5000 -0.1158 9 7 7.7725 2.7943 0.1341 10 6 7.9738 1.3615 0.3896 11 6 8.9334 0.8027 -0.6658 12 6 10.2221 1.6283 -0.6659 13 1 10.9163 1.2176 -1.3990 14 7 10.8327 1.5801 0.6649 15 6 11.6550 0.5389 1.0037 16 1 11.8531 -0.2470 0.2900 17 6 12.2340 0.4936 2.2645 18 7 13.0240 -0.5074 2.5903 19 14 11.8919 1.8534 3.4987 20 1 12.9050 2.9281 3.3447 21 1 10.5372 2.4118 3.2573 22 1 11.9614 1.3013 4.8755 23 6 9.8997 3.0801 -1.0267 24 1 9.4228 3.1142 -2.0063 25 6 11.1926 3.8975 -1.0588 26 6 8.9510 3.6648 0.0244 27 8 5.3812 1.0522 -0.0034 28 7 4.2638 0.5911 0.0012 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.6294 3.7594 0.0009 35 1 7.0181 0.8412 0.3264 36 1 8.4011 1.2216 1.3825 37 1 8.4657 0.8582 -1.6487 38 1 9.1669 -0.2360 -0.4315 39 1 10.6545 2.2859 1.3061 40 1 13.4289 -0.5389 3.4713 41 1 11.8684 3.4794 -1.8049 42 1 10.9625 4.9314 -1.3163 43 1 11.6681 3.8640 -0.0785 44 1 8.6400 4.6643 -0.2798 45 1 9.4590 3.7151 0.9874 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036119164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:30 Heat of formation + Delta-G solvation = 22.092112 kcal Electronic energy + Delta-G solvation = -28258.420998 eV Core-core repulsion = 24281.151391 eV Total energy + Delta-G solvation = -3977.269608 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.18152 -40.24636 -39.26909 -38.03443 -34.70401 -33.71570 -33.11172 -32.01034 -31.59875 -31.40596 -29.82381 -26.89155 -25.67284 -24.30058 -23.63959 -23.27034 -22.57806 -21.76920 -20.84994 -18.93632 -18.27612 -18.01285 -17.74655 -17.21697 -16.34872 -16.23912 -15.93216 -15.24765 -14.96675 -14.70588 -14.44697 -14.19861 -13.87041 -13.66503 -13.50823 -13.45102 -13.13113 -13.05625 -12.63329 -12.33724 -12.25946 -11.79710 -11.66008 -11.51817 -11.50685 -11.43411 -11.02294 -11.00440 -10.69526 -10.59716 -10.27422 -10.19541 -10.05777 -9.92209 -9.58865 -9.55192 -8.99336 -8.56453 -7.32122 -5.81348 -3.17080 0.58686 1.89588 2.31164 2.38253 2.86508 3.14759 3.31696 3.34546 3.42097 3.84558 4.30294 4.51688 4.52951 4.53903 4.61493 4.84283 4.93152 5.01627 5.08059 5.19168 5.21379 5.29687 5.35169 5.42714 5.52001 5.56444 5.59498 5.61998 5.66858 5.81236 5.88212 6.00821 6.16636 6.24316 6.31709 6.37149 6.50092 6.61367 6.68639 6.71031 6.79917 7.24483 7.75480 7.94677 7.97822 8.37533 9.15373 9.87868 10.07190 11.37000 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016604 B = 0.003305 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.890979 B = 8470.623942 C = 9219.166335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.282 6.282 4 C 0.208 3.792 5 C -0.158 4.158 6 C -0.049 4.049 7 C 0.599 3.401 8 O -0.521 6.521 9 N -0.586 5.586 10 C 0.098 3.902 11 C -0.148 4.148 12 C 0.183 3.817 13 H 0.063 0.937 14 N -0.744 5.744 15 C -0.241 4.241 16 H 0.091 0.909 17 C 0.007 3.993 18 N -0.933 5.933 19 Si 0.878 3.122 20 H -0.284 1.284 21 H -0.278 1.278 22 H -0.291 1.291 23 C -0.113 4.113 24 H 0.074 0.926 25 C -0.138 4.138 26 C 0.118 3.882 27 O 0.119 5.881 28 N -0.394 5.394 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.189 0.811 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.360 0.640 40 H 0.259 0.741 41 H 0.060 0.940 42 H 0.047 0.953 43 H 0.065 0.935 44 H 0.092 0.908 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.002 4.834 -7.374 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.189 6.189 4 C 0.010 3.990 5 C -0.181 4.181 6 C -0.115 4.115 7 C 0.384 3.616 8 O -0.399 6.399 9 N -0.316 5.316 10 C -0.024 4.024 11 C -0.189 4.189 12 C 0.073 3.927 13 H 0.081 0.919 14 N -0.387 5.387 15 C -0.371 4.371 16 H 0.109 0.891 17 C -0.189 4.189 18 N -0.580 5.580 19 Si 0.709 3.291 20 H -0.210 1.210 21 H -0.205 1.205 22 H -0.218 1.218 23 C -0.132 4.132 24 H 0.092 0.908 25 C -0.196 4.196 26 C -0.004 4.004 27 O 0.057 5.943 28 N -0.121 5.121 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.206 0.794 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.194 0.806 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.110 0.890 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.200 4.130 -7.417 21.911 hybrid contribution -0.395 1.240 1.119 1.717 sum -20.595 5.370 -6.298 22.196 Atomic orbital electron populations 1.21796 0.92136 1.03260 1.03652 1.22848 0.95888 0.80484 1.02619 1.86205 1.13016 1.30364 1.89343 1.21791 0.85814 0.90420 1.00961 1.22140 0.90020 0.99226 1.06674 1.24083 0.96487 0.84339 1.06566 1.16615 0.80962 0.85902 0.78134 1.90843 1.84483 1.13165 1.51367 1.48105 1.04841 1.10817 1.67869 1.22287 1.00715 0.77947 1.01461 1.22502 0.97379 1.01932 0.97047 1.20219 0.92343 0.91260 0.88862 0.91868 1.42843 1.56895 1.27574 1.11429 1.19045 1.19010 1.00431 0.98587 0.89095 1.24640 0.99424 0.97511 0.97318 1.69687 1.35458 1.31619 1.21259 0.86671 0.77829 0.82627 0.82021 1.21038 1.20481 1.21772 1.21784 0.95896 0.97265 0.98305 0.90752 1.21675 0.96424 0.98218 1.03273 1.21810 0.84427 0.93954 1.00199 1.85150 1.21918 1.18652 1.68562 1.74001 0.90948 1.22716 1.24398 0.89898 0.91335 0.91356 0.91450 0.91424 0.79397 0.88988 0.89438 0.92670 0.89798 0.80628 0.93052 0.92122 0.93405 0.91609 0.89009 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.28 37.15 0.38 -0.50 16 2 C 0.06 0.48 6.38 37.15 0.24 0.72 16 3 O -0.28 -3.18 10.21 -18.89 -0.19 -3.37 16 4 C 0.21 2.61 8.00 -16.72 -0.13 2.48 16 5 C -0.16 -1.92 10.97 -38.77 -0.43 -2.34 16 6 C -0.05 -0.66 6.96 -36.36 -0.25 -0.91 16 7 C 0.60 8.90 7.69 -12.47 -0.10 8.81 16 8 O -0.52 -8.69 16.35 5.30 0.09 -8.60 16 9 N -0.59 -8.69 2.97 -174.00 -0.52 -9.21 16 10 C 0.10 1.48 6.08 -3.71 -0.02 1.45 16 11 C -0.15 -2.28 5.78 -26.61 -0.15 -2.43 16 12 C 0.18 3.11 2.53 -67.89 -0.17 2.94 16 13 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 14 N -0.74 -15.61 3.45 -53.39 -0.18 -15.79 16 15 C -0.24 -6.24 10.41 -15.06 -0.16 -6.40 16 16 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 17 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 18 N -0.93 -28.22 13.97 55.49 0.78 -27.44 16 19 Si 0.88 21.18 27.74 -169.99 -4.71 16.47 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.28 6.52 56.52 0.37 -5.92 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 C -0.11 -1.61 2.67 -90.51 -0.24 -1.85 16 24 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 25 C -0.14 -1.91 9.05 37.16 0.34 -1.57 16 26 C 0.12 1.73 5.41 -3.71 -0.02 1.71 16 27 O 0.12 1.62 7.79 15.49 0.12 1.74 16 28 N -0.39 -5.32 11.50 30.47 0.35 -4.97 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.19 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.09 1.29 3.84 -54.48 -0.21 1.08 16 36 H 0.09 1.50 7.74 -51.93 -0.40 1.10 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 1.40 8.14 -51.92 -0.42 0.98 16 39 H 0.36 7.57 3.79 -40.82 -0.15 7.41 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 1.04 7.54 -51.93 -0.39 0.65 16 44 H 0.09 1.29 7.04 -51.93 -0.37 0.93 16 45 H 0.07 1.17 6.64 -51.93 -0.34 0.83 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -30.48 362.92 -6.15 -36.63 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.53 Total: 6.87 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -0.82 Total: 2.20 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: 0.42 Total: -57.41 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.01 Total: -10.22 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.71 Total: 16.47 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.48 -6.15 -36.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036119164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.722 kcal (2) G-P(sol) polarization free energy of solvation -30.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds