Wall clock time and date at job start Tue Mar 31 2020 14:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42896 * 109.47361 * 2 1 4 4 C 1.35729 * 117.00407 * 179.97438 * 3 2 1 5 5 C 1.41857 * 126.79248 * 180.02562 * 4 3 2 6 6 C 1.36664 * 103.81651 * 179.97438 * 5 4 3 7 7 C 1.47542 * 126.87899 * 179.97438 * 6 5 4 8 8 O 1.21577 * 119.99789 * 353.57381 * 7 6 5 9 9 N 1.34771 * 119.99685 * 173.57460 * 7 6 5 10 10 C 1.46928 * 120.63232 * 354.89506 * 9 7 6 11 11 C 1.53193 * 108.77191 * 126.36847 * 10 9 7 12 12 C 1.53044 * 109.31378 * 54.63793 * 11 10 9 13 13 H 1.08998 * 109.45841 * 178.62216 * 12 11 10 14 14 N 1.46501 * 109.45892 * 58.65454 * 12 11 10 15 15 C 1.36928 * 120.00475 * 85.00186 * 14 12 11 16 16 H 1.07999 * 120.00125 * 359.97438 * 15 14 12 17 17 C 1.38813 * 120.00300 * 179.97438 * 15 14 12 18 18 N 1.31616 * 120.00139 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 119.99792 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47155 * 269.99821 * 19 17 15 21 21 H 1.48500 * 109.47225 * 30.00028 * 19 17 15 22 22 H 1.48500 * 109.47277 * 149.99766 * 19 17 15 23 23 C 1.53034 * 109.53502 * 298.63271 * 12 11 10 24 24 H 1.09000 * 109.49875 * 301.41062 * 23 12 11 25 25 C 1.52998 * 109.49723 * 181.32012 * 23 12 11 26 26 C 1.46923 * 120.62843 * 174.87149 * 9 7 6 27 27 O 1.34662 * 106.23976 * 0.23978 * 6 5 4 28 28 N 1.20883 * 111.62872 * 359.56552 * 27 6 5 29 29 H 1.08996 * 109.47351 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47338 * 300.00429 * 1 2 3 31 31 H 1.09001 * 109.47075 * 60.00155 * 1 2 3 32 32 H 1.09003 * 109.47338 * 239.99571 * 2 1 3 33 33 H 1.09001 * 109.47075 * 119.99844 * 2 1 3 34 34 H 1.08002 * 128.08716 * 359.97438 * 5 4 3 35 35 H 1.09000 * 109.58868 * 6.58566 * 10 9 7 36 36 H 1.08998 * 109.70598 * 246.22528 * 10 9 7 37 37 H 1.08997 * 109.50353 * 294.68208 * 11 10 9 38 38 H 1.09007 * 109.49407 * 174.58364 * 11 10 9 39 39 H 0.97003 * 119.99355 * 264.99951 * 14 12 11 40 40 H 0.97003 * 120.00300 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.47654 * 59.99616 * 25 23 12 42 42 H 1.08999 * 109.47436 * 179.97438 * 25 23 12 43 43 H 1.09007 * 109.47140 * 299.99951 * 25 23 12 44 44 H 1.09005 * 109.58984 * 353.41716 * 26 9 7 45 45 H 1.09001 * 109.58671 * 113.84299 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3519 1.5251 0.0005 5 6 4.0453 2.7626 0.0012 6 6 5.3626 2.3987 0.0021 7 6 6.5303 3.3004 0.0025 8 8 6.3720 4.5000 -0.1158 9 7 7.7725 2.7943 0.1341 10 6 7.9738 1.3615 0.3896 11 6 8.9334 0.8027 -0.6658 12 6 10.2221 1.6283 -0.6659 13 1 10.9163 1.2176 -1.3990 14 7 10.8327 1.5801 0.6649 15 6 11.6550 0.5389 1.0037 16 1 11.8531 -0.2470 0.2900 17 6 12.2340 0.4936 2.2645 18 7 13.0240 -0.5074 2.5903 19 14 11.8919 1.8534 3.4987 20 1 12.9050 2.9281 3.3447 21 1 10.5372 2.4118 3.2573 22 1 11.9614 1.3013 4.8755 23 6 9.8997 3.0801 -1.0267 24 1 9.4228 3.1142 -2.0063 25 6 11.1926 3.8975 -1.0588 26 6 8.9510 3.6648 0.0244 27 8 5.3812 1.0522 -0.0034 28 7 4.2638 0.5911 0.0012 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.6294 3.7594 0.0009 35 1 7.0181 0.8412 0.3264 36 1 8.4011 1.2216 1.3825 37 1 8.4657 0.8582 -1.6487 38 1 9.1669 -0.2360 -0.4315 39 1 10.6545 2.2859 1.3061 40 1 13.4289 -0.5389 3.4713 41 1 11.8684 3.4794 -1.8049 42 1 10.9625 4.9314 -1.3163 43 1 11.6681 3.8640 -0.0785 44 1 8.6400 4.6643 -0.2798 45 1 9.4590 3.7151 0.9874 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036119164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:30 Heat of formation + Delta-G solvation = 1.441913 kcal Electronic energy + Delta-G solvation = -28259.316458 eV Core-core repulsion = 24281.151391 eV Total energy + Delta-G solvation = -3978.165068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.18443 -41.46181 -40.11059 -39.33956 -36.14400 -34.74032 -34.55704 -33.31170 -32.86055 -32.16064 -31.50704 -28.02360 -27.03140 -25.30642 -24.91617 -24.59200 -23.54991 -23.05881 -21.82932 -20.26307 -19.81612 -19.28961 -18.99055 -18.20537 -17.51282 -17.06741 -16.98585 -16.66768 -16.38981 -15.83778 -15.71816 -15.47191 -15.20966 -15.04021 -14.73492 -14.48257 -14.34246 -14.09594 -13.61491 -13.55530 -13.32817 -13.04362 -12.94028 -12.87055 -12.67617 -12.48503 -12.38778 -12.15357 -12.06261 -11.96238 -11.90999 -11.66314 -11.45859 -11.19138 -11.06555 -10.89228 -10.48085 -9.81785 -9.22645 -7.95934 -5.26920 -0.45487 0.92205 1.29556 1.38416 1.40601 1.44989 1.47532 1.74273 2.06418 2.51579 2.89340 3.25096 3.36400 3.59060 3.63435 3.82591 3.89062 3.91975 3.98281 4.02185 4.07763 4.24839 4.27556 4.35403 4.45259 4.51812 4.60412 4.71879 4.78589 4.81119 4.85242 4.95565 5.03183 5.12522 5.14983 5.18576 5.21886 5.29048 5.44144 5.57559 5.85004 5.87089 6.06248 6.28217 6.62658 6.93412 7.15127 7.91671 8.09657 9.26007 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016604 B = 0.003305 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.890979 B = 8470.623942 C = 9219.166335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 O -0.287 6.287 4 C 0.207 3.793 5 C -0.145 4.145 6 C -0.060 4.060 7 C 0.606 3.394 8 O -0.538 6.538 9 N -0.586 5.586 10 C 0.105 3.895 11 C -0.141 4.141 12 C 0.175 3.825 13 H 0.055 0.945 14 N -0.742 5.742 15 C -0.210 4.210 16 H 0.062 0.938 17 C -0.062 4.062 18 N -0.986 5.986 19 Si 0.940 3.060 20 H -0.281 1.281 21 H -0.254 1.254 22 H -0.303 1.303 23 C -0.102 4.102 24 H 0.096 0.904 25 C -0.136 4.136 26 C 0.118 3.882 27 O 0.112 5.888 28 N -0.404 5.404 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.208 0.792 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.363 0.637 40 H 0.254 0.746 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.043 0.957 44 H 0.103 0.897 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.451 6.519 -8.292 24.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.026 4.026 3 O -0.194 6.194 4 C 0.010 3.990 5 C -0.168 4.168 6 C -0.126 4.126 7 C 0.392 3.608 8 O -0.417 6.417 9 N -0.316 5.316 10 C -0.017 4.017 11 C -0.181 4.181 12 C 0.067 3.933 13 H 0.073 0.927 14 N -0.386 5.386 15 C -0.342 4.342 16 H 0.080 0.920 17 C -0.253 4.253 18 N -0.637 5.637 19 Si 0.769 3.231 20 H -0.207 1.207 21 H -0.179 1.179 22 H -0.231 1.231 23 C -0.121 4.121 24 H 0.115 0.885 25 C -0.194 4.194 26 C -0.004 4.004 27 O 0.050 5.950 28 N -0.132 5.132 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.225 0.775 35 H 0.123 0.877 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.197 0.803 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.122 0.878 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.698 5.849 -8.381 24.893 hybrid contribution 0.261 0.658 1.276 1.460 sum -22.437 6.507 -7.105 24.418 Atomic orbital electron populations 1.21823 0.89930 1.04658 1.03843 1.23116 0.97615 0.79319 1.02530 1.86230 1.12154 1.31974 1.89058 1.21950 0.86359 0.90384 1.00342 1.22420 0.89468 0.99957 1.04931 1.23893 0.96461 0.84308 1.07916 1.16637 0.81033 0.85760 0.77414 1.90835 1.84756 1.13906 1.52183 1.48087 1.05093 1.10516 1.67940 1.22145 1.01119 0.78447 1.00005 1.22374 0.96670 1.00481 0.98598 1.20458 0.92567 0.93772 0.86484 0.92733 1.42800 1.56365 1.26235 1.13178 1.18996 1.17660 1.00126 0.97368 0.92020 1.25322 1.00370 1.00020 0.99589 1.69860 1.37959 1.34305 1.21599 0.85644 0.78862 0.79831 0.78807 1.20693 1.17920 1.23055 1.21705 0.96296 0.94913 0.99209 0.88530 1.21656 0.95914 0.99764 1.02043 1.21823 0.84339 0.94548 0.99685 1.85089 1.22105 1.18714 1.69046 1.73991 0.91097 1.23117 1.24996 0.87885 0.91209 0.91064 0.91421 0.91652 0.77487 0.87683 0.91639 0.90126 0.91532 0.80307 0.93695 0.92085 0.90834 0.93792 0.87838 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 71.98 0.74 -0.64 16 2 C 0.05 0.75 6.38 71.98 0.46 1.21 16 3 O -0.29 -5.93 10.21 -90.52 -0.92 -6.85 16 4 C 0.21 4.82 8.00 85.78 0.69 5.51 16 5 C -0.15 -3.20 10.97 22.80 0.25 -2.95 16 6 C -0.06 -1.50 6.96 24.36 0.17 -1.33 16 7 C 0.61 16.63 7.69 86.70 0.67 17.29 16 8 O -0.54 -16.60 16.35 -3.96 -0.06 -16.67 16 9 N -0.59 -16.14 2.97 -822.68 -2.44 -18.59 16 10 C 0.11 3.03 6.08 86.36 0.53 3.55 16 11 C -0.14 -4.15 5.78 30.67 0.18 -3.98 16 12 C 0.18 5.75 2.53 45.02 0.11 5.86 16 13 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 14 N -0.74 -30.76 3.45 -322.82 -1.11 -31.87 16 15 C -0.21 -11.07 10.41 84.04 0.87 -10.19 16 16 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 17 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 18 N -0.99 -61.66 13.97 21.65 0.30 -61.36 16 19 Si 0.94 44.20 27.74 68.60 1.90 46.11 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.25 -10.77 6.52 99.48 0.65 -10.12 16 22 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 23 C -0.10 -2.65 2.67 -10.72 -0.03 -2.68 16 24 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 25 C -0.14 -3.45 9.05 71.98 0.65 -2.80 16 26 C 0.12 3.17 5.41 86.36 0.47 3.64 16 27 O 0.11 2.87 7.79 65.63 0.51 3.38 16 28 N -0.40 -10.29 11.50 -172.00 -1.98 -12.27 16 29 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.21 3.63 8.06 -2.91 -0.02 3.60 16 35 H 0.11 2.79 3.84 -42.81 -0.16 2.63 16 36 H 0.07 2.20 7.74 -2.39 -0.02 2.18 16 37 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 39 H 0.36 14.82 3.79 -92.71 -0.35 14.46 16 40 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 41 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.04 1.31 7.54 -2.38 -0.02 1.29 16 44 H 0.10 2.60 7.04 -2.38 -0.02 2.58 16 45 H 0.06 1.85 6.64 -2.39 -0.02 1.83 16 Total: -1.00 -66.22 362.92 2.86 -63.36 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: 0.45 Total: 25.28 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 6.22 Total: 9.47 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -5.23 Total: -124.09 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.48 Total: -20.14 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.90 Total: 46.11 kcal Total: -66.22 2.86 -63.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036119164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.806 kcal (2) G-P(sol) polarization free energy of solvation -66.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds