Wall clock time and date at job start Tue Mar 31 2020 14:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42896 * 109.46812 * 2 1 4 4 C 1.35729 * 116.99727 * 180.02562 * 3 2 1 5 5 C 1.41854 * 126.78531 * 179.71104 * 4 3 2 6 6 C 1.36665 * 103.81358 * 180.25974 * 5 4 3 7 7 C 1.47544 * 126.88400 * 179.97438 * 6 5 4 8 8 O 1.21581 * 119.99796 * 6.80159 * 7 6 5 9 9 N 1.34777 * 120.00358 * 186.79186 * 7 6 5 10 10 C 1.46929 * 120.62730 * 6.05779 * 9 7 6 11 11 C 1.53188 * 108.77177 * 233.57954 * 10 9 7 12 12 C 1.53039 * 109.31608 * 305.36679 * 11 10 9 13 13 H 1.09008 * 109.45725 * 301.34634 * 12 11 10 14 14 N 1.46496 * 109.46456 * 181.38797 * 12 11 10 15 15 C 1.36936 * 120.00473 * 84.99767 * 14 12 11 16 16 H 1.08004 * 119.99754 * 359.97438 * 15 14 12 17 17 C 1.38809 * 120.00363 * 180.02562 * 15 14 12 18 18 N 1.31617 * 119.99845 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99922 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47212 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46893 * 119.99904 * 19 17 15 22 22 H 1.48496 * 109.47085 * 239.99787 * 19 17 15 23 23 C 1.53047 * 109.53870 * 61.36135 * 12 11 10 24 24 H 1.09005 * 109.49199 * 58.59339 * 23 12 11 25 25 C 1.52994 * 109.49876 * 178.65269 * 23 12 11 26 26 C 1.46922 * 120.63157 * 185.76985 * 9 7 6 27 27 O 1.34661 * 106.24268 * 359.97438 * 6 5 4 28 28 N 1.20881 * 111.62897 * 0.02562 * 27 6 5 29 29 H 1.09010 * 109.46824 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46857 * 299.99582 * 1 2 3 31 31 H 1.08996 * 109.47208 * 60.00231 * 1 2 3 32 32 H 1.09007 * 109.46671 * 239.99815 * 2 1 3 33 33 H 1.08999 * 109.47512 * 120.00168 * 2 1 3 34 34 H 1.07997 * 128.09714 * 0.25527 * 5 4 3 35 35 H 1.08995 * 109.58850 * 353.36448 * 10 9 7 36 36 H 1.08998 * 109.58517 * 113.79229 * 10 9 7 37 37 H 1.09000 * 109.50010 * 65.32072 * 11 10 9 38 38 H 1.09003 * 109.49659 * 185.41652 * 11 10 9 39 39 H 0.97002 * 119.99629 * 265.00315 * 14 12 11 40 40 H 0.96995 * 119.99887 * 180.02562 * 18 17 15 41 41 H 1.09005 * 109.47408 * 59.99980 * 25 23 12 42 42 H 1.09002 * 109.47448 * 180.02562 * 25 23 12 43 43 H 1.09010 * 109.47204 * 300.00410 * 25 23 12 44 44 H 1.08997 * 109.59080 * 246.21090 * 26 9 7 45 45 H 1.09010 * 109.58607 * 6.63337 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3518 1.5251 -0.0005 5 6 4.0451 2.7627 -0.0064 6 6 5.3624 2.3988 -0.0103 7 6 6.5302 3.3005 -0.0176 8 8 6.3728 4.4999 0.1041 9 7 7.7714 2.7946 -0.1588 10 6 7.9701 1.3660 -0.4387 11 6 8.9307 0.7880 0.6053 12 6 10.2205 1.6115 0.6172 13 1 10.6731 1.5918 -0.3742 14 7 11.1546 1.0416 1.5913 15 6 11.9742 0.0060 1.2292 16 1 11.9316 -0.3909 0.2256 17 6 12.8589 -0.5344 2.1523 18 7 12.9097 -0.0518 3.3757 19 14 13.9763 -1.9476 1.6585 20 1 13.7260 -2.3037 0.2388 21 1 15.3943 -1.5381 1.8231 22 1 13.6975 -3.1237 2.5210 23 6 9.9010 3.0577 1.0030 24 1 9.4259 3.0760 1.9839 25 6 11.1953 3.8723 1.0474 26 6 8.9512 3.6624 -0.0421 27 8 5.3812 1.0523 -0.0063 28 7 4.2638 0.5911 -0.0011 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.6293 3.7594 -0.0075 35 1 7.0137 0.8462 -0.3826 36 1 8.3965 1.2446 -1.4344 37 1 8.4647 0.8277 1.5899 38 1 9.1621 -0.2469 0.3533 39 1 11.1925 1.3977 2.4927 40 1 13.5281 -0.4291 4.0207 41 1 11.6696 3.8546 0.0661 42 1 10.9673 4.9021 1.3226 43 1 11.8713 3.4405 1.7854 44 1 9.4561 3.7245 -1.0061 45 1 8.6423 4.6583 0.2758 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036119166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:33 Heat of formation + Delta-G solvation = -5.250395 kcal Electronic energy + Delta-G solvation = -27730.681770 eV Core-core repulsion = 23752.226503 eV Total energy + Delta-G solvation = -3978.455268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.17438 -41.34567 -40.10212 -39.13751 -36.32007 -34.72543 -34.52045 -33.23670 -32.81394 -32.15348 -31.06941 -27.99143 -26.91837 -25.46723 -24.62797 -24.48480 -23.30417 -23.07762 -21.82619 -20.90410 -19.37445 -19.15061 -18.93288 -18.20777 -17.51497 -17.04945 -16.98715 -16.68375 -16.26680 -15.74966 -15.64694 -15.44482 -15.18770 -15.06510 -14.70901 -14.26661 -14.09666 -13.99359 -13.62697 -13.55320 -13.10222 -12.99873 -12.87351 -12.83280 -12.71911 -12.47592 -12.36551 -12.14649 -12.06590 -12.02417 -11.81165 -11.67691 -11.44626 -11.12748 -11.05226 -10.84452 -10.47049 -9.82159 -8.93826 -7.88984 -5.15972 -0.43815 0.93132 1.30808 1.46481 1.49942 1.50647 1.59775 1.77646 2.08028 2.59865 2.90386 3.28317 3.44940 3.60461 3.79840 3.86317 3.90777 3.92347 4.01365 4.07135 4.13674 4.26606 4.34991 4.40478 4.49627 4.53121 4.72743 4.78678 4.79062 4.83267 4.85644 4.87911 4.99329 5.05327 5.15367 5.20439 5.29997 5.42858 5.51647 5.58865 5.64580 5.85809 6.07166 6.33013 6.65078 6.94815 7.39664 8.16267 8.38631 9.34807 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.002884 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.624315 B = 9707.678975 C =11099.212186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 O -0.287 6.287 4 C 0.206 3.794 5 C -0.147 4.147 6 C -0.060 4.060 7 C 0.606 3.394 8 O -0.539 6.539 9 N -0.589 5.589 10 C 0.104 3.896 11 C -0.141 4.141 12 C 0.177 3.823 13 H 0.054 0.946 14 N -0.731 5.731 15 C -0.225 4.225 16 H 0.079 0.921 17 C -0.078 4.078 18 N -0.971 5.971 19 Si 0.965 3.035 20 H -0.264 1.264 21 H -0.298 1.298 22 H -0.299 1.299 23 C -0.102 4.102 24 H 0.056 0.944 25 C -0.130 4.130 26 C 0.127 3.873 27 O 0.113 5.887 28 N -0.405 5.405 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.208 0.792 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.045 0.955 38 H 0.068 0.932 39 H 0.371 0.629 40 H 0.247 0.753 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.039 0.961 44 H 0.096 0.904 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.640 4.731 -10.685 24.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.026 4.026 3 O -0.194 6.194 4 C 0.009 3.991 5 C -0.169 4.169 6 C -0.126 4.126 7 C 0.391 3.609 8 O -0.417 6.417 9 N -0.319 5.319 10 C -0.019 4.019 11 C -0.182 4.182 12 C 0.069 3.931 13 H 0.072 0.928 14 N -0.370 5.370 15 C -0.357 4.357 16 H 0.097 0.903 17 C -0.270 4.270 18 N -0.623 5.623 19 Si 0.796 3.204 20 H -0.188 1.188 21 H -0.226 1.226 22 H -0.227 1.227 23 C -0.122 4.122 24 H 0.075 0.925 25 C -0.188 4.188 26 C 0.006 3.994 27 O 0.051 5.949 28 N -0.132 5.132 29 H 0.121 0.879 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.225 0.775 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.203 0.797 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.058 0.942 44 H 0.115 0.885 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.909 4.108 -10.754 24.749 hybrid contribution 0.761 -0.444 0.749 1.156 sum -21.148 3.664 -10.005 23.680 Atomic orbital electron populations 1.21825 0.89951 1.04653 1.03839 1.23114 0.97607 0.79332 1.02513 1.86231 1.12199 1.31951 1.89064 1.21962 0.86351 0.90419 1.00389 1.22426 0.89563 0.99930 1.04998 1.23930 0.96514 0.84305 1.07831 1.16647 0.81174 0.85716 0.77358 1.90842 1.84782 1.14078 1.52020 1.48133 1.05088 1.10977 1.67713 1.22325 1.01278 0.78418 0.99868 1.22475 0.96760 1.00698 0.98238 1.20480 0.88840 0.90721 0.93109 0.92778 1.42600 1.43277 1.39477 1.11638 1.19636 1.11837 1.07898 0.96373 0.90307 1.25469 1.02503 1.02912 0.96142 1.69819 1.41590 1.46003 1.04845 0.85178 0.78371 0.79130 0.77755 1.18797 1.22565 1.22716 1.21716 0.96359 0.95451 0.98646 0.92545 1.21576 0.95936 0.99072 1.02192 1.21924 0.83593 0.93863 1.00044 1.85088 1.22089 1.18715 1.68987 1.73988 0.91120 1.23109 1.25024 0.87895 0.91264 0.91015 0.91340 0.91752 0.77536 0.87864 0.88351 0.93650 0.91302 0.79743 0.94366 0.92040 0.91382 0.94180 0.88543 0.88492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 71.98 0.74 -0.62 16 2 C 0.05 0.75 6.38 71.98 0.46 1.21 16 3 O -0.29 -5.87 10.21 -90.52 -0.92 -6.80 16 4 C 0.21 4.73 8.00 85.78 0.69 5.42 16 5 C -0.15 -3.16 10.98 22.80 0.25 -2.91 16 6 C -0.06 -1.45 6.95 24.36 0.17 -1.28 16 7 C 0.61 15.90 7.69 86.70 0.67 16.57 16 8 O -0.54 -16.29 16.36 -3.97 -0.06 -16.36 16 9 N -0.59 -14.67 2.97 -821.84 -2.44 -17.11 16 10 C 0.10 2.49 6.34 86.36 0.55 3.04 16 11 C -0.14 -4.47 5.66 30.67 0.17 -4.30 16 12 C 0.18 6.26 2.19 45.02 0.10 6.36 16 13 H 0.05 1.89 8.08 -2.38 -0.02 1.87 16 14 N -0.73 -34.48 4.41 -322.80 -1.42 -35.90 16 15 C -0.23 -11.82 9.93 84.03 0.83 -10.99 16 16 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 17 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 18 N -0.97 -58.56 13.06 21.65 0.28 -58.28 16 19 Si 0.97 45.28 29.55 68.60 2.03 47.30 16 20 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 21 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 22 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 23 C -0.10 -3.05 2.47 -10.57 -0.03 -3.08 16 24 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 25 C -0.13 -3.86 9.03 71.98 0.65 -3.21 16 26 C 0.13 3.09 5.73 86.51 0.50 3.59 16 27 O 0.11 2.80 7.80 65.64 0.51 3.31 16 28 N -0.40 -10.11 11.50 -172.00 -1.98 -12.09 16 29 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.21 3.55 8.06 -2.91 -0.02 3.53 16 35 H 0.10 2.39 3.86 -40.65 -0.16 2.23 16 36 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.37 19.35 7.50 -92.71 -0.70 18.65 16 40 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 41 H 0.06 1.69 8.14 -2.38 -0.02 1.68 16 42 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.04 1.48 7.36 -2.38 -0.02 1.46 16 44 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.10 2.35 7.04 -2.38 -0.02 2.33 16 Total: -1.00 -65.56 370.04 2.37 -63.19 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.16 Total: 26.86 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 6.21 Total: 5.87 kcal Atomic # 7 Polarization: -117.83 SS G_CDS: -5.56 Total: -123.38 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.48 Total: -19.85 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -65.56 2.37 -63.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036119166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.945 kcal (2) G-P(sol) polarization free energy of solvation -65.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds