Wall clock time and date at job start Tue Mar 31 2020 14:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42902 * 109.46975 * 2 1 4 4 C 1.35729 * 116.99782 * 180.02562 * 3 2 1 5 5 C 1.41856 * 126.78150 * 180.29639 * 4 3 2 6 6 C 1.36667 * 103.80596 * 180.11924 * 5 4 3 7 7 C 1.47548 * 126.87651 * 179.88062 * 6 5 4 8 8 O 1.21582 * 119.99777 * 352.77387 * 7 6 5 9 9 N 1.34773 * 119.99641 * 172.77200 * 7 6 5 10 10 C 1.46919 * 120.63354 * 353.05801 * 9 7 6 11 11 C 1.53197 * 108.77506 * 233.58376 * 10 9 7 12 12 C 1.53037 * 109.31395 * 305.36744 * 11 10 9 13 13 H 1.09002 * 109.45955 * 181.38712 * 12 11 10 14 14 N 1.46500 * 109.45985 * 301.35451 * 12 11 10 15 15 C 1.36936 * 120.00452 * 275.00295 * 14 12 11 16 16 H 1.07997 * 119.99622 * 359.97438 * 15 14 12 17 17 C 1.38809 * 120.00284 * 180.02562 * 15 14 12 18 18 N 1.31618 * 120.00090 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00189 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47071 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47315 * 119.99664 * 19 17 15 22 22 H 1.48497 * 109.47156 * 240.00039 * 19 17 15 23 23 C 1.53342 * 109.61003 * 61.37342 * 12 11 10 24 24 H 1.09002 * 109.47407 * 58.54585 * 23 12 11 25 25 C 1.53001 * 109.68869 * 178.74749 * 23 12 11 26 26 C 1.46930 * 120.62595 * 173.03531 * 9 7 6 27 27 O 1.34659 * 106.24256 * 359.61557 * 6 5 4 28 28 N 1.20872 * 111.63260 * 0.26590 * 27 6 5 29 29 H 1.09001 * 109.46746 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46944 * 300.00004 * 1 2 3 31 31 H 1.08997 * 109.47060 * 60.00469 * 1 2 3 32 32 H 1.08996 * 109.46944 * 239.99996 * 2 1 3 33 33 H 1.09004 * 109.47016 * 119.99942 * 2 1 3 34 34 H 1.07999 * 128.10073 * 0.02562 * 5 4 3 35 35 H 1.08992 * 109.59280 * 353.37436 * 10 9 7 36 36 H 1.09005 * 109.58722 * 113.79935 * 10 9 7 37 37 H 1.08997 * 109.49280 * 65.32308 * 11 10 9 38 38 H 1.09000 * 109.49534 * 185.38123 * 11 10 9 39 39 H 0.97003 * 120.00119 * 95.00019 * 14 12 11 40 40 H 0.96995 * 120.00293 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.47291 * 179.75253 * 25 23 12 42 42 H 1.08998 * 109.46670 * 299.74922 * 25 23 12 43 43 H 1.08997 * 109.47175 * 59.74836 * 25 23 12 44 44 H 1.09003 * 109.58846 * 246.19972 * 26 9 7 45 45 H 1.09002 * 109.58726 * 6.48504 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3520 1.5251 -0.0005 5 6 4.0452 2.7628 0.0052 6 6 5.3625 2.3988 -0.0009 7 6 6.5303 3.3006 -0.0011 8 8 6.3725 4.4994 -0.1279 9 7 7.7718 2.7953 0.1393 10 6 7.9707 1.3720 0.4446 11 6 8.8590 1.2537 1.6871 12 6 10.1552 2.0347 1.4588 13 1 10.7997 1.9318 2.3318 14 7 10.8432 1.5044 0.2791 15 6 11.6716 0.4207 0.3990 16 1 11.8180 -0.0429 1.3633 17 6 12.3238 -0.0814 -0.7187 18 7 12.1458 0.4839 -1.8939 19 14 13.4544 -1.5593 -0.5551 20 1 13.4840 -2.0055 0.8611 21 1 12.9529 -2.6635 -1.4120 22 1 14.8255 -1.1836 -0.9839 23 6 9.8306 3.5168 1.2366 24 1 9.2965 3.9058 2.1035 25 6 11.1274 4.3045 1.0392 26 6 8.9521 3.6574 -0.0106 27 8 5.3812 1.0523 -0.0008 28 7 4.2639 0.5911 -0.0006 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.6293 3.7595 0.0113 35 1 7.0068 0.9016 0.6385 36 1 8.4557 0.8815 -0.3994 37 1 8.3342 1.6638 2.5498 38 1 9.0929 0.2047 1.8685 39 1 10.7119 1.9210 -0.5870 40 1 12.6018 0.1334 -2.6749 41 1 10.8924 5.3565 0.8772 42 1 11.7520 4.2042 1.9268 43 1 11.6615 3.9139 0.1730 44 1 9.5172 3.3533 -0.8917 45 1 8.6355 4.6947 -0.1195 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036119168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:36 Heat of formation + Delta-G solvation = 14.983144 kcal Electronic energy + Delta-G solvation = -28127.449772 eV Core-core repulsion = 24149.871897 eV Total energy + Delta-G solvation = -3977.577876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.10359 -40.09265 -39.21158 -37.84628 -34.53279 -33.63845 -33.02478 -31.92749 -31.48794 -31.34130 -29.23009 -26.74096 -25.43154 -24.22588 -23.59785 -23.48809 -22.50590 -21.71806 -20.73268 -18.88161 -18.11934 -17.83864 -17.38919 -17.04394 -16.25598 -16.17395 -15.81430 -15.15764 -14.81006 -14.53411 -14.38662 -14.11689 -13.78837 -13.54071 -13.39404 -13.30666 -13.11154 -13.02218 -12.57584 -12.23350 -12.16779 -11.64607 -11.48207 -11.46675 -11.37408 -11.20662 -10.93416 -10.82163 -10.55302 -10.52591 -10.18020 -10.09819 -9.97521 -9.87580 -9.58191 -9.47410 -8.95701 -8.40560 -7.00032 -5.80867 -3.09405 0.67959 1.96271 2.38077 2.49823 2.96582 3.27233 3.40875 3.47233 3.49087 3.92554 4.41500 4.55486 4.56233 4.59669 4.67978 4.88859 5.01067 5.16668 5.25603 5.26874 5.32314 5.38711 5.48779 5.53060 5.59416 5.63195 5.71563 5.78503 5.85617 5.98713 6.06036 6.19690 6.30194 6.34058 6.46015 6.52155 6.66033 6.71511 6.75001 6.87729 6.93779 7.39385 7.68175 7.85388 8.06800 8.37553 9.49484 10.05219 10.40175 11.41564 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015086 B = 0.003228 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.558945 B = 8673.046237 C = 9979.990142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.282 6.282 4 C 0.206 3.794 5 C -0.160 4.160 6 C -0.046 4.046 7 C 0.598 3.402 8 O -0.523 6.523 9 N -0.582 5.582 10 C 0.103 3.897 11 C -0.148 4.148 12 C 0.177 3.823 13 H 0.053 0.947 14 N -0.719 5.719 15 C -0.237 4.237 16 H 0.070 0.930 17 C -0.011 4.011 18 N -0.932 5.932 19 Si 0.904 3.096 20 H -0.281 1.281 21 H -0.293 1.293 22 H -0.293 1.293 23 C -0.109 4.109 24 H 0.068 0.932 25 C -0.137 4.137 26 C 0.118 3.882 27 O 0.121 5.879 28 N -0.395 5.395 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.188 0.812 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.044 0.956 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.879 3.187 5.405 18.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.189 6.189 4 C 0.009 3.991 5 C -0.183 4.183 6 C -0.112 4.112 7 C 0.382 3.618 8 O -0.401 6.401 9 N -0.313 5.313 10 C -0.019 4.019 11 C -0.189 4.189 12 C 0.067 3.933 13 H 0.071 0.929 14 N -0.361 5.361 15 C -0.368 4.368 16 H 0.088 0.912 17 C -0.208 4.208 18 N -0.580 5.580 19 Si 0.735 3.265 20 H -0.206 1.206 21 H -0.220 1.220 22 H -0.220 1.220 23 C -0.129 4.129 24 H 0.086 0.914 25 C -0.195 4.195 26 C -0.003 4.003 27 O 0.058 5.942 28 N -0.121 5.121 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.206 0.794 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.219 0.781 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.112 2.547 5.380 19.065 hybrid contribution 0.359 -0.399 -0.271 0.601 sum -17.752 2.148 5.109 18.597 Atomic orbital electron populations 1.21795 0.92173 1.03219 1.03636 1.22842 0.95852 0.80551 1.02596 1.86203 1.13066 1.30287 1.89391 1.21799 0.85783 0.90471 1.01055 1.22128 0.90040 0.99172 1.06997 1.24129 0.96550 0.84297 1.06234 1.16604 0.80992 0.85822 0.78348 1.90838 1.84469 1.13169 1.51602 1.48087 1.04807 1.11631 1.66734 1.22174 1.00445 0.78945 1.00374 1.22531 0.98229 1.02720 0.95468 1.20297 0.91437 0.89405 0.92190 0.92873 1.42481 1.52929 1.35359 1.05342 1.19251 1.18424 1.05026 0.94090 0.91161 1.24702 1.00877 0.99626 0.95548 1.69648 1.47019 1.42752 0.98584 0.86171 0.80539 0.82623 0.77148 1.20636 1.21973 1.22009 1.21772 0.96216 0.97717 0.97145 0.91367 1.21658 0.96499 0.98138 1.03204 1.21824 0.84485 0.94816 0.99206 1.85180 1.22043 1.18725 1.68264 1.73997 0.90884 1.22655 1.24537 0.89939 0.91368 0.91342 0.91453 0.91481 0.79428 0.89752 0.88864 0.93198 0.90323 0.78113 0.93561 0.93645 0.92680 0.90950 0.89863 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.16 0.38 -0.55 16 2 C 0.06 0.51 6.38 37.16 0.24 0.75 16 3 O -0.28 -3.31 10.21 -18.89 -0.19 -3.50 16 4 C 0.21 2.71 8.00 -16.72 -0.13 2.58 16 5 C -0.16 -2.05 10.98 -38.77 -0.43 -2.48 16 6 C -0.05 -0.66 6.90 -36.35 -0.25 -0.91 16 7 C 0.60 9.39 7.68 -12.47 -0.10 9.29 16 8 O -0.52 -9.15 16.34 5.29 0.09 -9.06 16 9 N -0.58 -9.15 2.97 -173.99 -0.52 -9.67 16 10 C 0.10 1.63 5.89 -3.71 -0.02 1.61 16 11 C -0.15 -2.39 5.78 -26.61 -0.15 -2.54 16 12 C 0.18 3.16 2.54 -67.73 -0.17 2.99 16 13 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 14 N -0.72 -15.93 3.65 -53.24 -0.19 -16.13 16 15 C -0.24 -6.03 9.93 -15.06 -0.15 -6.18 16 16 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 17 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 18 N -0.93 -26.60 13.06 55.49 0.72 -25.87 16 19 Si 0.90 21.54 29.55 -169.99 -5.02 16.51 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 C -0.11 -1.68 2.68 -90.34 -0.24 -1.92 16 24 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 25 C -0.14 -2.07 9.07 37.16 0.34 -1.74 16 26 C 0.12 1.87 5.42 -3.70 -0.02 1.85 16 27 O 0.12 1.75 7.91 15.51 0.12 1.88 16 28 N -0.40 -5.61 11.50 30.47 0.35 -5.26 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.19 2.02 8.06 -52.49 -0.42 1.59 16 35 H 0.08 1.24 4.26 -52.63 -0.22 1.02 16 36 H 0.09 1.73 7.74 -51.93 -0.40 1.32 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.38 9.10 5.93 -40.82 -0.24 8.86 16 40 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.07 1.28 7.55 -51.93 -0.39 0.88 16 44 H 0.08 1.45 6.64 -51.93 -0.34 1.10 16 45 H 0.09 1.36 7.00 -51.93 -0.36 1.00 16 LS Contribution 366.34 15.07 5.52 5.52 Total: -1.00 -29.14 366.34 -6.51 -35.66 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -6.58 Total: 7.57 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -0.81 Total: 2.36 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 0.36 Total: -56.94 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.02 Total: -10.68 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.14 -6.51 -35.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036119168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.639 kcal (2) G-P(sol) polarization free energy of solvation -29.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds