Wall clock time and date at job start Tue Mar 31 2020 14:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42902 * 109.46975 * 2 1 4 4 C 1.35729 * 116.99782 * 180.02562 * 3 2 1 5 5 C 1.41856 * 126.78150 * 180.29639 * 4 3 2 6 6 C 1.36667 * 103.80596 * 180.11924 * 5 4 3 7 7 C 1.47548 * 126.87651 * 179.88062 * 6 5 4 8 8 O 1.21582 * 119.99777 * 352.77387 * 7 6 5 9 9 N 1.34773 * 119.99641 * 172.77200 * 7 6 5 10 10 C 1.46919 * 120.63354 * 353.05801 * 9 7 6 11 11 C 1.53197 * 108.77506 * 233.58376 * 10 9 7 12 12 C 1.53037 * 109.31395 * 305.36744 * 11 10 9 13 13 H 1.09002 * 109.45955 * 181.38712 * 12 11 10 14 14 N 1.46500 * 109.45985 * 301.35451 * 12 11 10 15 15 C 1.36936 * 120.00452 * 275.00295 * 14 12 11 16 16 H 1.07997 * 119.99622 * 359.97438 * 15 14 12 17 17 C 1.38809 * 120.00284 * 180.02562 * 15 14 12 18 18 N 1.31618 * 120.00090 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00189 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47071 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47315 * 119.99664 * 19 17 15 22 22 H 1.48497 * 109.47156 * 240.00039 * 19 17 15 23 23 C 1.53342 * 109.61003 * 61.37342 * 12 11 10 24 24 H 1.09002 * 109.47407 * 58.54585 * 23 12 11 25 25 C 1.53001 * 109.68869 * 178.74749 * 23 12 11 26 26 C 1.46930 * 120.62595 * 173.03531 * 9 7 6 27 27 O 1.34659 * 106.24256 * 359.61557 * 6 5 4 28 28 N 1.20872 * 111.63260 * 0.26590 * 27 6 5 29 29 H 1.09001 * 109.46746 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46944 * 300.00004 * 1 2 3 31 31 H 1.08997 * 109.47060 * 60.00469 * 1 2 3 32 32 H 1.08996 * 109.46944 * 239.99996 * 2 1 3 33 33 H 1.09004 * 109.47016 * 119.99942 * 2 1 3 34 34 H 1.07999 * 128.10073 * 0.02562 * 5 4 3 35 35 H 1.08992 * 109.59280 * 353.37436 * 10 9 7 36 36 H 1.09005 * 109.58722 * 113.79935 * 10 9 7 37 37 H 1.08997 * 109.49280 * 65.32308 * 11 10 9 38 38 H 1.09000 * 109.49534 * 185.38123 * 11 10 9 39 39 H 0.97003 * 120.00119 * 95.00019 * 14 12 11 40 40 H 0.96995 * 120.00293 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.47291 * 179.75253 * 25 23 12 42 42 H 1.08998 * 109.46670 * 299.74922 * 25 23 12 43 43 H 1.08997 * 109.47175 * 59.74836 * 25 23 12 44 44 H 1.09003 * 109.58846 * 246.19972 * 26 9 7 45 45 H 1.09002 * 109.58726 * 6.48504 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3520 1.5251 -0.0005 5 6 4.0452 2.7628 0.0052 6 6 5.3625 2.3988 -0.0009 7 6 6.5303 3.3006 -0.0011 8 8 6.3725 4.4994 -0.1279 9 7 7.7718 2.7953 0.1393 10 6 7.9707 1.3720 0.4446 11 6 8.8590 1.2537 1.6871 12 6 10.1552 2.0347 1.4588 13 1 10.7997 1.9318 2.3318 14 7 10.8432 1.5044 0.2791 15 6 11.6716 0.4207 0.3990 16 1 11.8180 -0.0429 1.3633 17 6 12.3238 -0.0814 -0.7187 18 7 12.1458 0.4839 -1.8939 19 14 13.4544 -1.5593 -0.5551 20 1 13.4840 -2.0055 0.8611 21 1 12.9529 -2.6635 -1.4120 22 1 14.8255 -1.1836 -0.9839 23 6 9.8306 3.5168 1.2366 24 1 9.2965 3.9058 2.1035 25 6 11.1274 4.3045 1.0392 26 6 8.9521 3.6574 -0.0106 27 8 5.3812 1.0523 -0.0008 28 7 4.2639 0.5911 -0.0006 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.6293 3.7595 0.0113 35 1 7.0068 0.9016 0.6385 36 1 8.4557 0.8815 -0.3994 37 1 8.3342 1.6638 2.5498 38 1 9.0929 0.2047 1.8685 39 1 10.7119 1.9210 -0.5870 40 1 12.6018 0.1334 -2.6749 41 1 10.8924 5.3565 0.8772 42 1 11.7520 4.2042 1.9268 43 1 11.6615 3.9139 0.1730 44 1 9.5172 3.3533 -0.8917 45 1 8.6355 4.6947 -0.1195 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036119168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:36 Heat of formation + Delta-G solvation = -3.835118 kcal Electronic energy + Delta-G solvation = -28128.265794 eV Core-core repulsion = 24149.871897 eV Total energy + Delta-G solvation = -3978.393897 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.17213 -41.39116 -40.10341 -39.22089 -36.02681 -34.69707 -34.53237 -33.16370 -32.82080 -32.14870 -30.94449 -27.98379 -26.87706 -25.47781 -25.00623 -24.57373 -23.52337 -23.06271 -21.77661 -20.20897 -19.28174 -19.20067 -19.03661 -18.10506 -17.48823 -17.05105 -16.95623 -16.66762 -16.12086 -15.91752 -15.66373 -15.53168 -15.09841 -14.92327 -14.64227 -14.41587 -14.24494 -14.09398 -13.56116 -13.53416 -13.05346 -12.94960 -12.87436 -12.86256 -12.64702 -12.41116 -12.37762 -12.14782 -12.03794 -11.94602 -11.90050 -11.56826 -11.42299 -11.12002 -11.05359 -10.84062 -10.46724 -9.74452 -8.89270 -7.85973 -5.11473 -0.43896 0.92714 1.33370 1.46442 1.50631 1.52530 1.60410 1.75944 2.10176 2.62266 2.91052 3.30775 3.48425 3.60234 3.86638 3.89953 3.92266 3.92339 4.04994 4.08780 4.11996 4.26619 4.35511 4.41554 4.49998 4.55677 4.65904 4.75311 4.79198 4.85794 4.87305 4.98841 5.04932 5.15349 5.17176 5.21478 5.27897 5.32706 5.49229 5.60675 5.65845 5.84972 6.12707 6.36451 6.65440 6.93003 7.44324 8.20433 8.43660 9.37418 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015086 B = 0.003228 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.558945 B = 8673.046237 C = 9979.990142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 O -0.286 6.286 4 C 0.208 3.792 5 C -0.145 4.145 6 C -0.059 4.059 7 C 0.604 3.396 8 O -0.540 6.540 9 N -0.583 5.583 10 C 0.112 3.888 11 C -0.141 4.141 12 C 0.171 3.829 13 H 0.052 0.948 14 N -0.724 5.724 15 C -0.222 4.222 16 H 0.075 0.925 17 C -0.073 4.073 18 N -0.968 5.968 19 Si 0.960 3.040 20 H -0.267 1.267 21 H -0.300 1.300 22 H -0.301 1.301 23 C -0.099 4.099 24 H 0.091 0.909 25 C -0.131 4.131 26 C 0.122 3.878 27 O 0.111 5.889 28 N -0.405 5.405 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.209 0.791 35 H 0.100 0.900 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.374 0.626 40 H 0.247 0.753 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.040 0.960 44 H 0.061 0.939 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.647 3.475 7.055 21.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 O -0.193 6.193 4 C 0.010 3.990 5 C -0.168 4.168 6 C -0.125 4.125 7 C 0.389 3.611 8 O -0.419 6.419 9 N -0.313 5.313 10 C -0.010 4.010 11 C -0.182 4.182 12 C 0.062 3.938 13 H 0.070 0.930 14 N -0.365 5.365 15 C -0.354 4.354 16 H 0.093 0.907 17 C -0.265 4.265 18 N -0.619 5.619 19 Si 0.791 3.209 20 H -0.192 1.192 21 H -0.228 1.228 22 H -0.228 1.228 23 C -0.118 4.118 24 H 0.109 0.891 25 C -0.189 4.189 26 C 0.000 4.000 27 O 0.048 5.952 28 N -0.132 5.132 29 H 0.121 0.879 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.226 0.774 35 H 0.118 0.882 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.208 0.792 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.059 0.941 44 H 0.079 0.921 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.900 2.837 7.087 21.314 hybrid contribution 0.777 -0.466 -0.729 1.163 sum -19.123 2.371 6.358 20.291 Atomic orbital electron populations 1.21823 0.89847 1.04669 1.03865 1.23125 0.97665 0.79331 1.02504 1.86232 1.12068 1.31964 1.89066 1.21950 0.86378 0.90369 1.00276 1.22416 0.89366 0.99972 1.05046 1.23907 0.96516 0.84261 1.07775 1.16657 0.81094 0.85748 0.77580 1.90825 1.84783 1.13940 1.52375 1.48064 1.04988 1.11391 1.66861 1.22005 1.00909 0.79039 0.99077 1.22413 0.97344 1.01973 0.96432 1.20528 0.91783 0.91158 0.90323 0.93028 1.42594 1.52898 1.34668 1.06367 1.19586 1.17110 1.04872 0.93849 0.90661 1.25348 1.03195 1.02391 0.95615 1.69791 1.48694 1.44409 0.99038 0.85253 0.78381 0.79807 0.77416 1.19166 1.22809 1.22848 1.21703 0.96472 0.95963 0.97693 0.89098 1.21594 0.96024 0.99321 1.01987 1.21741 0.84464 0.95166 0.98603 1.85132 1.22333 1.18812 1.68892 1.73986 0.90999 1.23081 1.25173 0.87866 0.91030 0.91188 0.91717 0.91432 0.77393 0.88246 0.91954 0.90528 0.91238 0.79187 0.94445 0.91326 0.92161 0.94057 0.92055 0.88467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.28 71.98 0.74 -0.72 16 2 C 0.05 0.79 6.38 71.98 0.46 1.25 16 3 O -0.29 -6.21 10.21 -90.52 -0.92 -7.13 16 4 C 0.21 5.13 8.00 85.78 0.69 5.82 16 5 C -0.15 -3.44 10.98 22.80 0.25 -3.19 16 6 C -0.06 -1.60 6.90 24.36 0.17 -1.43 16 7 C 0.60 18.20 7.68 86.70 0.67 18.87 16 8 O -0.54 -18.07 16.34 -3.97 -0.06 -18.14 16 9 N -0.58 -17.85 2.97 -822.64 -2.45 -20.30 16 10 C 0.11 3.51 5.89 86.37 0.51 4.02 16 11 C -0.14 -4.34 5.78 30.67 0.18 -4.16 16 12 C 0.17 5.93 2.54 45.12 0.11 6.04 16 13 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 14 N -0.72 -32.40 3.65 -322.34 -1.18 -33.58 16 15 C -0.22 -11.33 9.93 84.03 0.83 -10.49 16 16 H 0.08 3.71 7.83 -2.91 -0.02 3.69 16 17 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 18 N -0.97 -56.86 13.06 21.65 0.28 -56.58 16 19 Si 0.96 44.88 29.55 68.60 2.03 46.91 16 20 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 21 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 22 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 23 C -0.10 -2.89 2.68 -10.61 -0.03 -2.92 16 24 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 25 C -0.13 -3.82 9.07 71.98 0.65 -3.17 16 26 C 0.12 3.78 5.42 86.36 0.47 4.25 16 27 O 0.11 3.10 7.91 65.67 0.52 3.62 16 28 N -0.40 -11.05 11.50 -172.03 -1.98 -13.03 16 29 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.21 3.93 8.06 -2.91 -0.02 3.91 16 35 H 0.10 2.84 4.26 -13.36 -0.06 2.79 16 36 H 0.06 2.36 7.74 -2.38 -0.02 2.35 16 37 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.37 18.28 5.93 -92.71 -0.55 17.73 16 40 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 41 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.04 1.46 7.55 -2.39 -0.02 1.44 16 44 H 0.06 2.19 6.64 -2.39 -0.02 2.17 16 45 H 0.10 2.86 7.00 -2.39 -0.02 2.85 16 Total: -1.00 -62.40 366.34 2.82 -59.58 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.41 Total: 28.02 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 6.16 Total: 10.62 kcal Atomic # 7 Polarization: -118.17 SS G_CDS: -5.32 Total: -123.49 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.47 Total: -21.65 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -62.40 2.82 -59.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036119168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.749 kcal (2) G-P(sol) polarization free energy of solvation -62.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds