Wall clock time and date at job start Tue Mar 31 2020 14:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99859 * 2 1 4 4 C 1.50696 * 109.47106 * 180.02562 * 3 2 1 5 5 C 1.35315 * 126.66671 * 90.00023 * 4 3 2 6 6 C 1.42275 * 103.92229 * 180.02562 * 5 4 3 7 7 C 1.48324 * 126.93536 * 180.02562 * 6 5 4 8 8 O 1.21496 * 120.00683 * 353.72821 * 7 6 5 9 9 N 1.34780 * 119.99977 * 173.72597 * 7 6 5 10 10 C 1.46927 * 120.62647 * 4.45948 * 9 7 6 11 11 C 1.52769 * 109.00616 * 233.58169 * 10 9 7 12 12 C 1.53042 * 109.38170 * 305.58795 * 11 10 9 13 13 H 1.08999 * 109.45695 * 181.25788 * 12 11 10 14 14 N 1.46499 * 109.46280 * 301.22029 * 12 11 10 15 15 C 1.36935 * 119.99845 * 275.07079 * 14 12 11 16 16 H 1.07997 * 120.00216 * 359.97438 * 15 14 12 17 17 C 1.38814 * 120.00236 * 179.97438 * 15 14 12 18 18 N 1.31617 * 120.00531 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 119.99639 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46951 * 89.99944 * 19 17 15 21 21 H 1.48503 * 109.46963 * 210.00127 * 19 17 15 22 22 H 1.48505 * 109.46952 * 329.99848 * 19 17 15 23 23 C 1.53044 * 109.53825 * 61.24263 * 12 11 10 24 24 H 1.08992 * 109.49949 * 58.58203 * 23 12 11 25 25 C 1.52995 * 109.49524 * 178.68460 * 23 12 11 26 26 C 1.46924 * 120.63314 * 184.73301 * 9 7 6 27 27 N 1.30984 * 106.12364 * 0.02562 * 6 5 4 28 28 O 1.20916 * 111.43978 * 359.70217 * 27 6 5 29 29 H 1.08994 * 109.47575 * 59.99803 * 1 2 3 30 30 H 1.09008 * 109.47115 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47212 * 299.99397 * 1 2 3 32 32 H 1.09002 * 109.46647 * 60.00191 * 3 2 1 33 33 H 1.08994 * 109.47174 * 300.00745 * 3 2 1 34 34 H 1.08000 * 128.03539 * 0.02695 * 5 4 3 35 35 H 1.09000 * 109.59218 * 353.41624 * 10 9 7 36 36 H 1.08998 * 109.58742 * 113.84699 * 10 9 7 37 37 H 1.09002 * 109.56422 * 185.55288 * 11 10 9 38 38 H 1.08999 * 109.38377 * 65.51523 * 11 10 9 39 39 H 0.96994 * 120.00243 * 95.06343 * 14 12 11 40 40 H 0.97000 * 120.00243 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.46591 * 179.83880 * 25 23 12 42 42 H 1.09004 * 109.47180 * 299.83364 * 25 23 12 43 43 H 1.09001 * 109.47717 * 59.83491 * 25 23 12 44 44 H 1.08994 * 109.59123 * 246.15511 * 26 9 7 45 45 H 1.08999 * 109.58178 * 6.44648 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.3175 1.1229 -1.0864 6 6 5.6257 1.0186 -0.5369 7 6 6.9018 0.9180 -1.2862 8 8 6.8888 0.8047 -2.4958 9 7 8.0759 0.9522 -0.6252 10 6 8.1074 0.9906 0.8432 11 6 8.9583 2.1774 1.2917 12 6 10.3380 2.0902 0.6351 13 1 10.9537 2.9242 0.9717 14 7 10.9787 0.8277 1.0116 15 6 11.6758 0.7374 2.1868 16 1 11.7535 1.5970 2.8359 17 6 12.2825 -0.4590 2.5438 18 7 12.9529 -0.5457 3.6731 19 14 12.1475 -1.9461 1.4213 20 1 13.2799 -1.9455 0.4607 21 1 12.1901 -3.1868 2.2362 22 1 10.8650 -1.8879 0.6748 23 6 10.1854 2.1507 -0.8865 24 1 9.6864 3.0786 -1.1655 25 6 11.5673 2.0964 -1.5408 26 6 9.3485 0.9578 -1.3595 27 7 5.4757 1.0295 0.7643 28 8 4.3110 1.1275 1.0741 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6885 1.8463 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 4.0331 1.1460 -2.1280 35 1 7.0938 1.1035 1.2277 36 1 8.5440 0.0672 1.2236 37 1 9.0695 2.1579 2.3759 38 1 8.4711 3.1055 0.9926 39 1 10.9092 0.0557 0.4284 40 1 13.3765 -1.3818 3.9228 41 1 11.4580 2.1366 -2.6246 42 1 12.1625 2.9452 -1.2039 43 1 12.0662 1.1687 -1.2601 44 1 9.8883 0.0317 -1.1624 45 1 9.1533 1.0467 -2.4282 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036218185.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:25 Heat of formation + Delta-G solvation = -3.670193 kcal Electronic energy + Delta-G solvation = -28130.107554 eV Core-core repulsion = 24151.720809 eV Total energy + Delta-G solvation = -3978.386745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.29391 -41.49792 -39.34555 -38.90975 -36.19012 -35.33053 -34.54832 -33.68204 -33.17812 -31.57490 -28.78494 -28.20599 -27.12525 -26.47814 -25.24988 -24.86615 -23.61060 -23.11494 -21.01821 -20.05937 -19.72685 -19.08316 -18.64894 -18.18945 -17.23781 -17.19332 -16.76461 -16.70258 -16.45824 -16.20304 -15.77398 -15.54864 -15.22719 -15.03852 -14.81853 -14.54123 -14.42721 -13.95670 -13.74644 -13.44824 -13.37453 -13.02382 -12.97220 -12.79492 -12.63914 -12.47227 -12.38627 -12.12735 -11.98692 -11.80238 -11.70680 -11.66303 -11.41367 -11.25890 -10.91381 -10.76612 -10.69150 -9.85679 -9.28537 -8.01669 -5.32667 -0.12487 0.44668 1.33081 1.34252 1.40812 1.53517 1.82073 1.89250 2.45441 2.67552 2.96711 3.29996 3.33467 3.55761 3.62827 3.75803 3.87529 3.91166 3.98698 4.05206 4.22970 4.28077 4.37163 4.43470 4.50162 4.53776 4.58382 4.65481 4.67633 4.75192 4.78171 4.91889 4.96189 5.00395 5.05207 5.11694 5.14989 5.22992 5.37253 5.51631 5.80350 6.08874 6.11163 6.22686 6.67032 6.95749 7.08509 7.84976 8.03298 9.20218 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017146 B = 0.003219 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.624040 B = 8696.314971 C = 9367.117069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.143 3.857 4 C -0.023 4.023 5 C -0.159 4.159 6 C -0.043 4.043 7 C 0.593 3.407 8 O -0.554 6.554 9 N -0.588 5.588 10 C 0.089 3.911 11 C -0.138 4.138 12 C 0.176 3.824 13 H 0.056 0.944 14 N -0.742 5.742 15 C -0.213 4.213 16 H 0.063 0.937 17 C -0.059 4.059 18 N -0.983 5.983 19 Si 0.940 3.060 20 H -0.277 1.277 21 H -0.299 1.299 22 H -0.264 1.264 23 C -0.100 4.100 24 H 0.094 0.906 25 C -0.135 4.135 26 C 0.117 3.883 27 N -0.335 5.335 28 O 0.127 5.873 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.201 0.799 35 H 0.128 0.872 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.361 0.639 40 H 0.255 0.745 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.042 0.958 44 H 0.056 0.944 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.384 7.316 -11.759 29.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.337 6.337 3 C 0.067 3.933 4 C -0.086 4.086 5 C -0.181 4.181 6 C -0.199 4.199 7 C 0.380 3.620 8 O -0.433 6.433 9 N -0.319 5.319 10 C -0.033 4.033 11 C -0.179 4.179 12 C 0.068 3.932 13 H 0.074 0.926 14 N -0.386 5.386 15 C -0.344 4.344 16 H 0.081 0.919 17 C -0.251 4.251 18 N -0.634 5.634 19 Si 0.769 3.231 20 H -0.203 1.203 21 H -0.226 1.226 22 H -0.189 1.189 23 C -0.120 4.120 24 H 0.112 0.888 25 C -0.192 4.192 26 C -0.005 4.005 27 N -0.036 5.036 28 O 0.052 5.948 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.138 0.862 34 H 0.218 0.782 35 H 0.145 0.855 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.195 0.805 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -25.267 7.075 -11.224 28.539 hybrid contribution 0.219 -1.187 -0.599 1.348 sum -25.048 5.888 -11.824 28.318 Atomic orbital electron populations 1.23003 0.77860 1.04143 1.01912 1.87932 1.22570 1.27311 1.95905 1.20995 0.80351 0.86110 1.05891 1.24577 0.96416 1.03125 0.84511 1.22701 0.88393 1.04281 1.02755 1.23478 0.97010 1.09049 0.90400 1.17201 0.82048 0.76787 0.85987 1.90737 1.86897 1.51982 1.13637 1.48072 1.05459 1.70120 1.08250 1.22374 1.03971 0.99372 0.77603 1.22264 0.97209 0.97332 1.01049 1.20450 0.91815 0.88343 0.92618 0.92611 1.42800 1.62904 1.10279 1.22583 1.19009 1.22264 0.96773 0.96394 0.91913 1.25296 1.00904 1.00318 0.98534 1.69849 1.41464 1.26789 1.25311 0.85648 0.78391 0.80245 0.78853 1.20340 1.22623 1.18911 1.21684 0.96925 0.98340 0.95016 0.88796 1.21652 0.94834 1.02279 1.00485 1.21766 0.82458 0.98803 0.97449 1.73933 0.97691 1.16505 1.15498 1.84805 1.11385 1.64247 1.34382 0.91862 0.88973 0.92142 0.88029 0.86203 0.78196 0.85515 0.93091 0.91809 0.90733 0.80476 0.93552 0.90797 0.91798 0.93839 0.92564 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 113.37 1.25 1.41 16 2 O -0.42 -5.73 10.69 -148.98 -1.59 -7.32 16 3 C 0.14 1.30 6.50 71.23 0.46 1.76 16 4 C -0.02 -0.40 7.10 25.01 0.18 -0.22 16 5 C -0.16 -3.28 10.93 22.60 0.25 -3.03 16 6 C -0.04 -1.19 6.95 42.96 0.30 -0.89 16 7 C 0.59 19.35 7.72 86.93 0.67 20.02 16 8 O -0.55 -19.78 16.39 -3.70 -0.06 -19.84 16 9 N -0.59 -19.41 2.98 -822.58 -2.45 -21.86 16 10 C 0.09 3.07 6.05 86.22 0.52 3.59 16 11 C -0.14 -4.68 5.76 30.53 0.18 -4.50 16 12 C 0.18 6.40 2.53 45.02 0.11 6.51 16 13 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 14 N -0.74 -33.33 3.45 -322.81 -1.11 -34.45 16 15 C -0.21 -11.79 10.41 84.03 0.87 -10.91 16 16 H 0.06 3.78 8.06 -2.91 -0.02 3.76 16 17 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 18 N -0.98 -62.93 13.97 21.65 0.30 -62.63 16 19 Si 0.94 46.41 27.73 68.60 1.90 48.31 16 20 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 22 H -0.26 -12.16 6.52 99.48 0.65 -11.51 16 23 C -0.10 -2.97 2.67 -10.71 -0.03 -3.00 16 24 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 25 C -0.13 -3.78 9.05 71.98 0.65 -3.13 16 26 C 0.12 3.71 5.41 86.37 0.47 4.18 16 27 N -0.33 -9.30 8.50 -49.50 -0.42 -9.72 16 28 O 0.13 2.89 11.18 71.85 0.80 3.70 16 29 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.20 3.22 8.06 -2.91 -0.02 3.20 16 35 H 0.13 4.14 3.76 -46.37 -0.17 3.97 16 36 H 0.05 2.04 7.74 -2.39 -0.02 2.03 16 37 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.36 16.18 3.79 -92.71 -0.35 15.83 16 40 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 41 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 42 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.04 1.41 7.53 -2.39 -0.02 1.39 16 44 H 0.06 1.95 6.64 -2.39 -0.02 1.93 16 45 H 0.10 2.98 7.03 -2.39 -0.02 2.96 16 Total: -1.00 -73.59 363.62 4.16 -69.43 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: 0.44 Total: 25.59 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 6.35 Total: 8.78 kcal Atomic # 7 Polarization: -124.96 SS G_CDS: -3.68 Total: -128.64 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.85 Total: -23.46 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.90 Total: 48.31 kcal Total: -73.59 4.16 -69.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036218185.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.764 kcal (2) G-P(sol) polarization free energy of solvation -73.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds