Wall clock time and date at job start Tue Mar 31 2020 14:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42893 * 114.00037 * 2 1 4 4 C 1.50702 * 109.47200 * 179.97438 * 3 2 1 5 5 C 1.35321 * 126.66558 * 89.99959 * 4 3 2 6 6 C 1.42274 * 103.92040 * 180.02562 * 5 4 3 7 7 C 1.48331 * 126.93787 * 179.97438 * 6 5 4 8 8 O 1.21494 * 119.99656 * 353.03597 * 7 6 5 9 9 N 1.34773 * 119.99803 * 173.02898 * 7 6 5 10 10 C 1.46923 * 120.63460 * 353.22896 * 9 7 6 11 11 C 1.53193 * 108.77435 * 233.58305 * 10 9 7 12 12 C 1.53046 * 109.30933 * 305.36023 * 11 10 9 13 13 H 1.08998 * 109.46321 * 301.34590 * 12 11 10 14 14 N 1.46504 * 109.45355 * 181.38601 * 12 11 10 15 15 C 1.36936 * 120.00064 * 85.00455 * 14 12 11 16 16 H 1.08003 * 119.99903 * 0.02562 * 15 14 12 17 17 C 1.38814 * 120.00191 * 179.97438 * 15 14 12 18 18 N 1.31621 * 119.99604 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00113 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47368 * 89.99859 * 19 17 15 21 21 H 1.48493 * 109.47263 * 210.00385 * 19 17 15 22 22 H 1.48508 * 109.47070 * 330.00234 * 19 17 15 23 23 C 1.53042 * 109.53331 * 61.37149 * 12 11 10 24 24 H 1.08998 * 109.50106 * 58.58778 * 23 12 11 25 25 C 1.53001 * 109.49121 * 178.64530 * 23 12 11 26 26 C 1.46927 * 120.62562 * 173.19759 * 9 7 6 27 27 N 1.30985 * 106.12034 * 0.25821 * 6 5 4 28 28 O 1.20901 * 111.44322 * 359.53717 * 27 6 5 29 29 H 1.09006 * 109.46271 * 60.00369 * 1 2 3 30 30 H 1.08996 * 109.47071 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47358 * 300.00692 * 1 2 3 32 32 H 1.09004 * 109.47767 * 59.99451 * 3 2 1 33 33 H 1.09005 * 109.47261 * 299.99393 * 3 2 1 34 34 H 1.07994 * 128.03848 * 359.97438 * 5 4 3 35 35 H 1.09007 * 109.58557 * 113.79568 * 10 9 7 36 36 H 1.09001 * 109.58562 * 353.36682 * 10 9 7 37 37 H 1.09005 * 109.49672 * 185.41513 * 11 10 9 38 38 H 1.08999 * 109.49956 * 65.31630 * 11 10 9 39 39 H 0.96999 * 120.00104 * 264.99714 * 14 12 11 40 40 H 0.97000 * 119.99156 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.47461 * 59.99911 * 25 23 12 42 42 H 1.08999 * 109.46866 * 179.97438 * 25 23 12 43 43 H 1.09003 * 109.47739 * 299.99653 * 25 23 12 44 44 H 1.08995 * 109.58928 * 6.63455 * 26 9 7 45 45 H 1.09000 * 109.70884 * 246.27560 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.3185 1.1224 -1.0845 6 6 5.6263 1.0183 -0.5338 7 6 6.9030 0.9163 -1.2821 8 8 6.8904 0.7889 -2.4902 9 7 8.0768 0.9650 -0.6216 10 6 8.1150 1.2661 0.8159 11 6 9.0745 2.4375 1.0489 12 6 10.4383 2.1033 0.4402 13 1 10.8261 1.1923 0.8960 14 7 11.3680 3.2077 0.6901 15 6 12.0570 3.2686 1.8719 16 1 11.9153 2.5022 2.6196 17 6 12.9382 4.3147 2.1085 18 7 13.1119 5.2478 1.1966 19 14 13.8786 4.3973 3.7204 20 1 15.1669 3.6723 3.5796 21 1 14.1446 5.8168 4.0661 22 1 13.0718 3.7685 4.7970 23 6 10.2881 1.8948 -1.0685 24 1 9.8772 2.7970 -1.5214 25 6 11.6575 1.5940 -1.6811 26 6 9.3425 0.7172 -1.3255 27 7 5.4746 1.0245 0.7672 28 8 4.3098 1.1230 1.0759 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8898 32 1 1.6886 1.8465 0.8899 33 1 1.6887 1.8463 -0.8901 34 1 4.0349 1.1443 -2.1263 35 1 8.4665 0.3914 1.3633 36 1 7.1167 1.5377 1.1590 37 1 9.1861 2.6089 2.1196 38 1 8.6749 3.3346 0.5760 39 1 11.4955 3.8957 0.0183 40 1 13.7274 5.9790 1.3621 41 1 12.0676 0.6911 -1.2288 42 1 11.5500 1.4451 -2.7555 43 1 12.3304 2.4312 -1.4956 44 1 9.1541 0.6267 -2.3952 45 1 9.7951 -0.2025 -0.9551 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036218186.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:29 Heat of formation + Delta-G solvation = 9.828920 kcal Electronic energy + Delta-G solvation = -27532.742155 eV Core-core repulsion = 23554.940776 eV Total energy + Delta-G solvation = -3977.801380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.34074 -40.08968 -38.46099 -37.71095 -34.80509 -34.25093 -33.22458 -32.48458 -31.47394 -29.34411 -28.26013 -26.93073 -26.12160 -25.30672 -24.03458 -23.10557 -22.23454 -21.65860 -19.97939 -19.15486 -18.18028 -17.67617 -17.16636 -17.03303 -16.74068 -16.35232 -15.89833 -15.36502 -15.06817 -14.93603 -14.22975 -14.05134 -13.78413 -13.70218 -13.42586 -13.28832 -13.08732 -12.77589 -12.46395 -12.32814 -12.06739 -12.03751 -11.64221 -11.24833 -11.18203 -10.92327 -10.79986 -10.69864 -10.56908 -10.39719 -10.33158 -10.19541 -10.15693 -9.89269 -9.71569 -9.61642 -8.89381 -8.55381 -6.96145 -5.77461 -3.06037 0.82976 1.33613 2.46648 2.81340 3.06447 3.42610 3.47987 3.48300 3.49492 3.74377 4.12689 4.49663 4.57653 4.60068 4.72986 4.82469 4.83978 4.88089 5.13846 5.18771 5.19138 5.23978 5.31095 5.42532 5.54362 5.55653 5.68242 5.76439 5.80038 5.98932 6.06553 6.19617 6.34029 6.36648 6.43393 6.45922 6.51270 6.62849 6.82087 6.91449 7.05690 7.34399 7.69059 7.74126 8.03952 8.40797 9.52216 10.09470 10.44688 11.45045 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020031 B = 0.002632 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.489226 B =10634.768291 C =11657.074767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.145 3.855 4 C -0.040 4.040 5 C -0.154 4.154 6 C -0.019 4.019 7 C 0.595 3.405 8 O -0.532 6.532 9 N -0.588 5.588 10 C 0.088 3.912 11 C -0.149 4.149 12 C 0.183 3.817 13 H 0.049 0.951 14 N -0.720 5.720 15 C -0.237 4.237 16 H 0.070 0.930 17 C -0.014 4.014 18 N -0.932 5.932 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.110 4.110 24 H 0.070 0.930 25 C -0.135 4.135 26 C 0.120 3.880 27 N -0.315 5.315 28 O 0.125 5.875 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.183 0.817 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.051 0.949 42 H 0.043 0.957 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.183 -9.612 -4.127 26.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.068 3.932 4 C -0.103 4.103 5 C -0.177 4.177 6 C -0.178 4.178 7 C 0.380 3.620 8 O -0.408 6.408 9 N -0.320 5.320 10 C -0.035 4.035 11 C -0.190 4.190 12 C 0.072 3.928 13 H 0.067 0.933 14 N -0.360 5.360 15 C -0.368 4.368 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.581 5.581 19 Si 0.737 3.263 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.130 4.130 24 H 0.089 0.911 25 C -0.193 4.193 26 C -0.002 4.002 27 N -0.017 5.017 28 O 0.050 5.950 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.200 0.800 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.094 0.906 44 H 0.109 0.891 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.058 -9.945 -3.610 25.369 hybrid contribution 0.086 0.668 0.114 0.683 sum -22.972 -9.277 -3.496 25.020 Atomic orbital electron populations 1.22826 0.79673 1.03501 1.00489 1.87980 1.20567 1.26305 1.95572 1.20653 0.83109 0.86178 1.03293 1.23888 0.94987 1.05627 0.85828 1.22466 0.89733 1.03965 1.01494 1.23549 0.96866 1.07361 0.89981 1.16932 0.81529 0.77512 0.86026 1.90770 1.86453 1.50864 1.12677 1.48036 1.05573 1.67368 1.10978 1.22491 1.02969 0.99221 0.78839 1.22677 0.97226 0.96441 1.02699 1.20222 0.88966 0.92489 0.91085 0.93328 1.42404 1.47818 1.26516 1.19312 1.19222 1.16994 1.06561 0.94052 0.91223 1.24736 1.00454 0.97607 0.98167 1.69664 1.40181 1.14134 1.34083 0.86211 0.80026 0.76739 0.83338 1.21772 1.21849 1.20802 1.21746 0.95473 0.97520 0.98246 0.91136 1.21658 0.96266 1.02828 0.98588 1.21822 0.82023 0.98269 0.98102 1.74190 0.96531 1.15387 1.15546 1.84824 1.11731 1.65003 1.33458 0.93509 0.89031 0.93440 0.90272 0.89278 0.79987 0.91330 0.87573 0.90403 0.92380 0.78214 0.93545 0.92999 0.93744 0.90641 0.89106 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.39 -2.97 10.69 -35.23 -0.38 -3.34 16 3 C 0.14 0.87 6.49 36.01 0.23 1.11 16 4 C -0.04 -0.38 7.10 -35.35 -0.25 -0.63 16 5 C -0.15 -1.70 10.93 -39.07 -0.43 -2.13 16 6 C -0.02 -0.27 6.87 -82.53 -0.57 -0.84 16 7 C 0.59 9.58 7.71 -12.11 -0.09 9.48 16 8 O -0.53 -9.56 16.38 5.37 0.09 -9.48 16 9 N -0.59 -9.23 2.97 -173.70 -0.52 -9.75 16 10 C 0.09 1.35 6.12 -3.71 -0.02 1.32 16 11 C -0.15 -2.69 5.66 -26.61 -0.15 -2.84 16 12 C 0.18 3.57 2.19 -67.88 -0.15 3.43 16 13 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 14 N -0.72 -17.58 4.41 -53.38 -0.24 -17.82 16 15 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 16 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 18 N -0.93 -27.90 13.06 55.49 0.72 -27.17 16 19 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C -0.11 -1.87 2.46 -90.50 -0.22 -2.09 16 24 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 25 C -0.14 -2.23 9.03 37.16 0.34 -1.90 16 26 C 0.12 1.82 5.73 -3.71 -0.02 1.80 16 27 N -0.31 -4.25 8.67 33.29 0.29 -3.96 16 28 O 0.12 1.44 11.18 17.25 0.19 1.64 16 29 H 0.05 0.13 8.14 -51.93 -0.42 -0.30 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.18 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16 36 H 0.11 1.59 4.22 -56.02 -0.24 1.36 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.38 10.08 7.50 -40.82 -0.31 9.78 16 40 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 1.45 7.36 -51.93 -0.38 1.07 16 44 H 0.09 1.38 7.00 -51.93 -0.36 1.02 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 371.01 15.07 5.59 5.59 Total: -1.00 -32.65 371.01 -6.48 -39.14 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.75 Total: 7.03 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -0.47 Total: 0.88 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.26 Total: -58.70 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.10 Total: -11.18 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.65 -6.48 -39.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036218186.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.965 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds