Wall clock time and date at job start Tue Mar 31 2020 14:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00344 * 2 1 4 4 C 1.50704 * 109.47099 * 180.02562 * 3 2 1 5 5 C 1.35316 * 126.66608 * 90.28435 * 4 3 2 6 6 C 1.42274 * 103.91956 * 180.14883 * 5 4 3 7 7 C 1.48326 * 126.93571 * 179.88595 * 6 5 4 8 8 O 1.21503 * 120.00246 * 6.26171 * 7 6 5 9 9 N 1.34779 * 120.00205 * 186.25554 * 7 6 5 10 10 C 1.46925 * 120.62357 * 355.10340 * 9 7 6 11 11 C 1.53196 * 108.77353 * 126.41195 * 10 9 7 12 12 C 1.53042 * 109.31294 * 54.63321 * 11 10 9 13 13 H 1.09001 * 109.45765 * 178.62800 * 12 11 10 14 14 N 1.46496 * 109.46167 * 58.65236 * 12 11 10 15 15 C 1.36943 * 119.99826 * 85.00343 * 14 12 11 16 16 H 1.07997 * 119.99876 * 0.02562 * 15 14 12 17 17 C 1.38810 * 120.00025 * 179.97438 * 15 14 12 18 18 N 1.31615 * 119.99998 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99928 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47081 * 269.99866 * 19 17 15 21 21 H 1.48498 * 109.47332 * 30.00087 * 19 17 15 22 22 H 1.48507 * 109.47065 * 150.00111 * 19 17 15 23 23 C 1.53046 * 109.53356 * 298.63248 * 12 11 10 24 24 H 1.08994 * 109.49633 * 301.41379 * 23 12 11 25 25 C 1.53008 * 109.49407 * 181.31833 * 23 12 11 26 26 C 1.46921 * 120.63077 * 175.11981 * 9 7 6 27 27 N 1.30979 * 106.12373 * 359.62950 * 6 5 4 28 28 O 1.20905 * 111.44095 * 0.23771 * 27 6 5 29 29 H 1.08992 * 109.47452 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46584 * 299.99928 * 1 2 3 31 31 H 1.09002 * 109.47020 * 59.99668 * 1 2 3 32 32 H 1.08998 * 109.46998 * 59.99890 * 3 2 1 33 33 H 1.09001 * 109.46803 * 300.00186 * 3 2 1 34 34 H 1.08000 * 128.03783 * 0.02563 * 5 4 3 35 35 H 1.08993 * 109.59431 * 6.62592 * 10 9 7 36 36 H 1.09007 * 109.69983 * 246.26263 * 10 9 7 37 37 H 1.09002 * 109.49919 * 294.67722 * 11 10 9 38 38 H 1.09000 * 109.49848 * 174.58325 * 11 10 9 39 39 H 0.96999 * 120.00484 * 264.99854 * 14 12 11 40 40 H 0.96997 * 120.00012 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.46942 * 59.99947 * 25 23 12 42 42 H 1.09002 * 109.46913 * 180.02562 * 25 23 12 43 43 H 1.08996 * 109.46760 * 300.00013 * 25 23 12 44 44 H 1.08993 * 109.58846 * 353.37864 * 26 9 7 45 45 H 1.09008 * 109.58523 * 113.80500 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.3181 1.1281 -1.0864 6 6 5.6258 1.0180 -0.5368 7 6 6.9019 0.9168 -1.2861 8 8 6.9077 1.0373 -2.4952 9 7 8.0550 0.6912 -0.6259 10 6 8.0810 0.6499 0.8425 11 6 8.7285 -0.6652 1.2874 12 6 10.1042 -0.7997 0.6304 13 1 10.5774 -1.7231 0.9644 14 7 10.9400 0.3420 1.0098 15 6 11.6437 0.3151 2.1842 16 1 11.5828 -0.5480 2.8305 17 6 12.4361 1.3967 2.5435 18 7 12.5115 2.4479 1.7551 19 14 13.3954 1.3602 4.1459 20 1 12.5609 1.9274 5.2355 21 1 13.7544 -0.0423 4.4762 22 1 14.6338 2.1668 3.9999 23 6 9.9437 -0.8308 -0.8913 24 1 9.3017 -1.6655 -1.1724 25 6 11.3163 -0.9983 -1.5462 26 6 9.3099 0.4824 -1.3609 27 7 5.4758 1.0297 0.7643 28 8 4.3108 1.1225 1.0740 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 4.0341 1.1563 -2.1280 35 1 7.0628 0.7044 1.2278 36 1 8.6614 1.4902 1.2236 37 1 8.0979 -1.5016 0.9857 38 1 8.8415 -0.6667 2.3715 39 1 10.9950 1.1171 0.4291 40 1 13.0655 3.2036 2.0060 41 1 11.7681 -1.9314 -1.2096 42 1 11.2016 -1.0199 -2.6300 43 1 11.9571 -0.1624 -1.2657 44 1 9.1026 0.4266 -2.4295 45 1 9.9920 1.3091 -1.1616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036218187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:32 Heat of formation + Delta-G solvation = 14.489505 kcal Electronic energy + Delta-G solvation = -28029.485134 eV Core-core repulsion = 24051.885853 eV Total energy + Delta-G solvation = -3977.599282 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.23071 -39.98211 -38.40231 -37.72803 -34.55106 -34.06187 -33.12617 -32.44306 -31.37868 -29.16157 -28.19684 -26.81912 -26.07277 -25.31204 -23.81838 -23.44862 -22.47783 -21.63619 -19.73292 -18.43196 -18.05448 -17.59081 -17.27802 -16.91154 -16.68065 -16.29246 -15.73837 -15.26029 -15.07863 -14.49795 -14.33426 -14.01712 -13.96683 -13.54006 -13.36304 -13.24611 -12.96420 -12.71297 -12.52421 -12.33096 -11.99815 -11.81598 -11.48516 -11.27894 -11.04776 -10.87508 -10.76232 -10.56170 -10.47884 -10.30323 -10.24842 -10.17336 -9.89061 -9.83736 -9.80493 -9.53464 -8.89686 -8.28494 -6.95826 -5.77406 -3.05695 0.94507 1.44787 2.55728 2.98310 3.23074 3.42954 3.48690 3.49875 3.55705 3.87764 4.22982 4.56526 4.59003 4.68567 4.81530 4.88741 4.89146 4.94734 5.22191 5.23325 5.27052 5.34352 5.40709 5.61924 5.64240 5.65860 5.82098 5.91209 5.94659 6.05281 6.14039 6.27759 6.40786 6.46919 6.51580 6.52013 6.63216 6.73865 6.78722 6.95318 7.00936 7.56185 7.70410 7.89550 8.21255 8.41120 9.52631 10.09256 10.44475 11.45148 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017548 B = 0.003033 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.239355 B = 9230.615259 C =10114.312060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.146 3.854 4 C -0.042 4.042 5 C -0.155 4.155 6 C -0.016 4.016 7 C 0.591 3.409 8 O -0.538 6.538 9 N -0.581 5.581 10 C 0.084 3.916 11 C -0.146 4.146 12 C 0.177 3.823 13 H 0.052 0.948 14 N -0.718 5.718 15 C -0.236 4.236 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.933 5.933 19 Si 0.905 3.095 20 H -0.291 1.291 21 H -0.283 1.283 22 H -0.293 1.293 23 C -0.108 4.108 24 H 0.066 0.934 25 C -0.137 4.137 26 C 0.119 3.881 27 N -0.312 5.312 28 O 0.122 5.878 29 H 0.091 0.909 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.182 0.818 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.054 0.946 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.596 -3.594 -5.449 23.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.068 3.932 4 C -0.105 4.105 5 C -0.177 4.177 6 C -0.174 4.174 7 C 0.376 3.624 8 O -0.415 6.415 9 N -0.312 5.312 10 C -0.038 4.038 11 C -0.187 4.187 12 C 0.067 3.933 13 H 0.070 0.930 14 N -0.361 5.361 15 C -0.367 4.367 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.581 5.581 19 Si 0.736 3.264 20 H -0.218 1.218 21 H -0.209 1.209 22 H -0.219 1.219 23 C -0.128 4.128 24 H 0.084 0.916 25 C -0.194 4.194 26 C -0.003 4.003 27 N -0.014 5.014 28 O 0.048 5.952 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.199 0.801 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -21.460 -3.798 -4.939 22.346 hybrid contribution 0.106 0.532 0.184 0.573 sum -21.354 -3.266 -4.755 22.120 Atomic orbital electron populations 1.22820 0.79760 1.03472 1.00429 1.87988 1.20495 1.26340 1.95558 1.20649 0.83198 0.86142 1.03186 1.23878 0.94917 1.05739 0.85951 1.22444 0.89782 1.04098 1.01401 1.23596 0.96923 1.06985 0.89912 1.16955 0.81473 0.77914 0.86071 1.90756 1.85913 1.51895 1.12911 1.48032 1.07089 1.67465 1.08582 1.22563 1.03880 1.00182 0.77198 1.22495 0.98854 0.95549 1.01852 1.20243 0.90024 0.92657 0.90383 0.93046 1.42467 1.52861 1.16849 1.23883 1.19221 1.19606 1.00910 0.96984 0.91243 1.24704 1.00841 0.96688 0.98616 1.69647 1.43924 1.06947 1.37619 0.86226 0.79461 0.77148 0.83555 1.21831 1.20856 1.21898 1.21716 0.97021 0.96526 0.97573 0.91582 1.21664 0.96232 1.02997 0.98550 1.21763 0.83649 0.98389 0.96473 1.74081 0.96318 1.15593 1.15453 1.84844 1.11821 1.64947 1.33561 0.89057 0.93487 0.93549 0.90334 0.89359 0.80059 0.87077 0.89655 0.93554 0.90660 0.78145 0.93548 0.92696 0.93711 0.90964 0.89595 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.26 16 2 O -0.38 -3.22 10.69 -35.23 -0.38 -3.60 16 3 C 0.15 0.98 6.50 36.01 0.23 1.21 16 4 C -0.04 -0.44 7.10 -35.35 -0.25 -0.69 16 5 C -0.16 -1.86 10.93 -39.07 -0.43 -2.29 16 6 C -0.02 -0.24 6.95 -82.53 -0.57 -0.82 16 7 C 0.59 10.50 7.72 -12.11 -0.09 10.40 16 8 O -0.54 -10.44 16.39 5.36 0.09 -10.35 16 9 N -0.58 -10.43 2.97 -173.70 -0.52 -10.95 16 10 C 0.08 1.53 6.07 -3.71 -0.02 1.51 16 11 C -0.15 -2.66 5.78 -26.61 -0.15 -2.81 16 12 C 0.18 3.46 2.53 -67.89 -0.17 3.29 16 13 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 14 N -0.72 -17.00 3.64 -53.38 -0.19 -17.20 16 15 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 16 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 17 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -27.55 13.06 55.49 0.72 -26.83 16 19 Si 0.90 22.17 29.55 -169.99 -5.02 17.15 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 C -0.11 -1.85 2.67 -90.49 -0.24 -2.09 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 25 C -0.14 -2.24 9.05 37.16 0.34 -1.90 16 26 C 0.12 2.11 5.41 -3.71 -0.02 2.09 16 27 N -0.31 -4.69 8.51 33.29 0.28 -4.41 16 28 O 0.12 1.55 11.18 17.25 0.19 1.74 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.05 0.15 8.14 -51.93 -0.42 -0.28 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.18 1.81 8.06 -52.49 -0.42 1.38 16 35 H 0.11 1.93 3.76 -74.14 -0.28 1.65 16 36 H 0.09 1.80 7.74 -51.93 -0.40 1.40 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.38 9.71 5.93 -40.82 -0.24 9.46 16 40 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 1.36 7.54 -51.93 -0.39 0.97 16 44 H 0.09 1.48 7.03 -51.93 -0.37 1.12 16 45 H 0.08 1.56 6.64 -51.92 -0.34 1.21 16 LS Contribution 366.78 15.07 5.53 5.53 Total: -1.00 -32.00 366.78 -6.45 -38.45 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -6.64 Total: 8.19 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -0.52 Total: 2.27 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: 0.30 Total: -59.38 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.10 Total: -12.21 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.00 -6.45 -38.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036218187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.938 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds