Wall clock time and date at job start Tue Mar 31 2020 14:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00344 * 2 1 4 4 C 1.50704 * 109.47099 * 180.02562 * 3 2 1 5 5 C 1.35316 * 126.66608 * 90.28435 * 4 3 2 6 6 C 1.42274 * 103.91956 * 180.14883 * 5 4 3 7 7 C 1.48326 * 126.93571 * 179.88595 * 6 5 4 8 8 O 1.21503 * 120.00246 * 6.26171 * 7 6 5 9 9 N 1.34779 * 120.00205 * 186.25554 * 7 6 5 10 10 C 1.46925 * 120.62357 * 355.10340 * 9 7 6 11 11 C 1.53196 * 108.77353 * 126.41195 * 10 9 7 12 12 C 1.53042 * 109.31294 * 54.63321 * 11 10 9 13 13 H 1.09001 * 109.45765 * 178.62800 * 12 11 10 14 14 N 1.46496 * 109.46167 * 58.65236 * 12 11 10 15 15 C 1.36943 * 119.99826 * 85.00343 * 14 12 11 16 16 H 1.07997 * 119.99876 * 0.02562 * 15 14 12 17 17 C 1.38810 * 120.00025 * 179.97438 * 15 14 12 18 18 N 1.31615 * 119.99998 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99928 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47081 * 269.99866 * 19 17 15 21 21 H 1.48498 * 109.47332 * 30.00087 * 19 17 15 22 22 H 1.48507 * 109.47065 * 150.00111 * 19 17 15 23 23 C 1.53046 * 109.53356 * 298.63248 * 12 11 10 24 24 H 1.08994 * 109.49633 * 301.41379 * 23 12 11 25 25 C 1.53008 * 109.49407 * 181.31833 * 23 12 11 26 26 C 1.46921 * 120.63077 * 175.11981 * 9 7 6 27 27 N 1.30979 * 106.12373 * 359.62950 * 6 5 4 28 28 O 1.20905 * 111.44095 * 0.23771 * 27 6 5 29 29 H 1.08992 * 109.47452 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46584 * 299.99928 * 1 2 3 31 31 H 1.09002 * 109.47020 * 59.99668 * 1 2 3 32 32 H 1.08998 * 109.46998 * 59.99890 * 3 2 1 33 33 H 1.09001 * 109.46803 * 300.00186 * 3 2 1 34 34 H 1.08000 * 128.03783 * 0.02563 * 5 4 3 35 35 H 1.08993 * 109.59431 * 6.62592 * 10 9 7 36 36 H 1.09007 * 109.69983 * 246.26263 * 10 9 7 37 37 H 1.09002 * 109.49919 * 294.67722 * 11 10 9 38 38 H 1.09000 * 109.49848 * 174.58325 * 11 10 9 39 39 H 0.96999 * 120.00484 * 264.99854 * 14 12 11 40 40 H 0.96997 * 120.00012 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.46942 * 59.99947 * 25 23 12 42 42 H 1.09002 * 109.46913 * 180.02562 * 25 23 12 43 43 H 1.08996 * 109.46760 * 300.00013 * 25 23 12 44 44 H 1.08993 * 109.58846 * 353.37864 * 26 9 7 45 45 H 1.09008 * 109.58523 * 113.80500 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.3181 1.1281 -1.0864 6 6 5.6258 1.0180 -0.5368 7 6 6.9019 0.9168 -1.2861 8 8 6.9077 1.0373 -2.4952 9 7 8.0550 0.6912 -0.6259 10 6 8.0810 0.6499 0.8425 11 6 8.7285 -0.6652 1.2874 12 6 10.1042 -0.7997 0.6304 13 1 10.5774 -1.7231 0.9644 14 7 10.9400 0.3420 1.0098 15 6 11.6437 0.3151 2.1842 16 1 11.5828 -0.5480 2.8305 17 6 12.4361 1.3967 2.5435 18 7 12.5115 2.4479 1.7551 19 14 13.3954 1.3602 4.1459 20 1 12.5609 1.9274 5.2355 21 1 13.7544 -0.0423 4.4762 22 1 14.6338 2.1668 3.9999 23 6 9.9437 -0.8308 -0.8913 24 1 9.3017 -1.6655 -1.1724 25 6 11.3163 -0.9983 -1.5462 26 6 9.3099 0.4824 -1.3609 27 7 5.4758 1.0297 0.7643 28 8 4.3108 1.1225 1.0740 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 4.0341 1.1563 -2.1280 35 1 7.0628 0.7044 1.2278 36 1 8.6614 1.4902 1.2236 37 1 8.0979 -1.5016 0.9857 38 1 8.8415 -0.6667 2.3715 39 1 10.9950 1.1171 0.4291 40 1 13.0655 3.2036 2.0060 41 1 11.7681 -1.9314 -1.2096 42 1 11.2016 -1.0199 -2.6300 43 1 11.9571 -0.1624 -1.2657 44 1 9.1026 0.4266 -2.4295 45 1 9.9920 1.3091 -1.1616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036218187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:31 Heat of formation + Delta-G solvation = -6.329062 kcal Electronic energy + Delta-G solvation = -28030.387895 eV Core-core repulsion = 24051.885853 eV Total energy + Delta-G solvation = -3978.502042 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.28666 -41.42678 -39.24190 -38.89650 -36.09100 -35.29974 -34.51324 -33.64016 -33.02573 -30.99929 -28.77085 -28.17085 -26.99327 -26.45515 -25.48577 -24.89208 -23.59166 -23.12100 -20.97000 -19.84613 -19.34639 -19.06572 -18.62198 -18.15803 -17.20822 -17.16714 -16.73308 -16.68270 -16.22247 -16.20037 -15.84223 -15.57319 -15.09127 -14.94000 -14.80096 -14.46261 -14.26710 -13.91249 -13.71106 -13.37359 -13.04202 -12.98183 -12.88926 -12.74737 -12.60193 -12.40997 -12.35899 -12.12916 -12.00964 -11.72993 -11.65027 -11.62224 -11.36189 -11.19854 -10.84169 -10.76049 -10.68131 -9.78704 -8.95737 -7.90807 -5.17519 -0.10482 0.46323 1.47922 1.48353 1.56428 1.57365 1.84144 1.91631 2.57917 2.69990 2.97696 3.35616 3.42796 3.65906 3.77580 3.82640 3.90948 4.02445 4.04221 4.07274 4.30846 4.35048 4.40705 4.49457 4.51464 4.57520 4.60011 4.67695 4.70563 4.78692 4.82077 4.96555 4.97480 5.02157 5.07981 5.16835 5.19141 5.26881 5.42358 5.54479 5.58629 6.11905 6.15022 6.30851 6.70255 6.97965 7.38125 8.13238 8.37510 9.32585 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017548 B = 0.003033 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.239355 B = 9230.615259 C =10114.312060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.144 3.856 4 C -0.023 4.023 5 C -0.159 4.159 6 C -0.042 4.042 7 C 0.590 3.410 8 O -0.558 6.558 9 N -0.585 5.585 10 C 0.093 3.907 11 C -0.138 4.138 12 C 0.172 3.828 13 H 0.052 0.948 14 N -0.724 5.724 15 C -0.228 4.228 16 H 0.075 0.925 17 C -0.074 4.074 18 N -0.970 5.970 19 Si 0.966 3.034 20 H -0.291 1.291 21 H -0.270 1.270 22 H -0.300 1.300 23 C -0.098 4.098 24 H 0.087 0.913 25 C -0.130 4.130 26 C 0.123 3.877 27 N -0.334 5.334 28 O 0.128 5.872 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.201 0.799 35 H 0.126 0.874 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.373 0.627 40 H 0.248 0.752 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.040 0.960 44 H 0.093 0.907 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.103 -4.768 -5.499 26.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.335 6.335 3 C 0.067 3.933 4 C -0.087 4.087 5 C -0.182 4.182 6 C -0.199 4.199 7 C 0.377 3.623 8 O -0.436 6.436 9 N -0.316 5.316 10 C -0.029 4.029 11 C -0.179 4.179 12 C 0.063 3.937 13 H 0.070 0.930 14 N -0.365 5.365 15 C -0.360 4.360 16 H 0.093 0.907 17 C -0.267 4.267 18 N -0.621 5.621 19 Si 0.796 3.204 20 H -0.219 1.219 21 H -0.195 1.195 22 H -0.227 1.227 23 C -0.118 4.118 24 H 0.105 0.895 25 C -0.188 4.188 26 C 0.001 3.999 27 N -0.036 5.036 28 O 0.053 5.947 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.137 0.863 34 H 0.218 0.782 35 H 0.143 0.857 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.207 0.793 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.060 0.940 44 H 0.111 0.889 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.984 -5.023 -4.988 25.007 hybrid contribution 0.704 0.860 0.170 1.124 sum -23.280 -4.163 -4.818 24.135 Atomic orbital electron populations 1.23008 0.77872 1.04200 1.01861 1.87928 1.22545 1.27166 1.95896 1.20981 0.80295 0.86167 1.05818 1.24576 0.96422 1.03169 0.84496 1.22700 0.88403 1.04285 1.02777 1.23463 0.96978 1.09037 0.90406 1.17248 0.82057 0.76983 0.86024 1.90730 1.86406 1.52708 1.13758 1.48053 1.07408 1.67782 1.08331 1.22402 1.04147 0.98822 0.77527 1.22374 0.98223 0.96241 1.01063 1.20453 0.89944 0.90978 0.92308 0.93030 1.42570 1.53232 1.17700 1.22967 1.19575 1.18435 1.00480 0.97503 0.90699 1.25422 1.02716 0.96807 1.01708 1.69806 1.45269 1.07600 1.39410 0.85243 0.77690 0.77385 0.80064 1.21886 1.19540 1.22720 1.21645 0.97778 0.96739 0.95640 0.89466 1.21594 0.95117 1.01950 1.00106 1.21677 0.83422 0.97939 0.96899 1.73934 0.97675 1.16486 1.15485 1.84797 1.11353 1.64217 1.34371 0.88811 0.92198 0.91950 0.88075 0.86329 0.78220 0.85710 0.93203 0.91314 0.91622 0.79346 0.94335 0.91942 0.91268 0.94044 0.88867 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 113.37 1.25 1.41 16 2 O -0.42 -5.77 10.69 -148.98 -1.59 -7.36 16 3 C 0.14 1.43 6.50 71.24 0.46 1.90 16 4 C -0.02 -0.43 7.10 25.01 0.18 -0.25 16 5 C -0.16 -3.54 10.93 22.60 0.25 -3.29 16 6 C -0.04 -1.26 6.95 42.96 0.30 -0.97 16 7 C 0.59 20.88 7.72 86.93 0.67 21.55 16 8 O -0.56 -21.47 16.39 -3.73 -0.06 -21.53 16 9 N -0.59 -21.16 2.97 -821.77 -2.44 -23.60 16 10 C 0.09 3.46 6.07 86.36 0.52 3.99 16 11 C -0.14 -4.96 5.78 30.67 0.18 -4.78 16 12 C 0.17 6.66 2.53 45.02 0.11 6.77 16 13 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16 14 N -0.72 -35.00 3.64 -322.81 -1.18 -36.17 16 15 C -0.23 -12.28 9.93 84.03 0.83 -11.45 16 16 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 17 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 18 N -0.97 -59.08 13.06 21.65 0.28 -58.80 16 19 Si 0.97 46.25 29.55 68.60 2.03 48.28 16 20 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 22 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 23 C -0.10 -3.28 2.67 -10.71 -0.03 -3.31 16 24 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 25 C -0.13 -4.16 9.05 71.98 0.65 -3.50 16 26 C 0.12 4.39 5.41 86.36 0.47 4.86 16 27 N -0.33 -9.82 8.51 -49.52 -0.42 -10.25 16 28 O 0.13 3.07 11.18 71.90 0.80 3.87 16 29 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.22 8.14 -2.38 -0.02 0.20 16 31 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.20 3.53 8.06 -2.91 -0.02 3.51 16 35 H 0.13 4.35 3.76 -46.24 -0.17 4.18 16 36 H 0.05 2.20 7.74 -2.38 -0.02 2.18 16 37 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.37 19.67 5.93 -92.71 -0.55 19.12 16 40 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 41 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.04 1.58 7.54 -2.39 -0.02 1.56 16 44 H 0.09 3.20 7.03 -2.39 -0.02 3.18 16 45 H 0.06 2.27 6.64 -2.38 -0.02 2.26 16 Total: -1.00 -70.34 366.78 4.03 -66.31 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.30 Total: 30.08 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 6.31 Total: 9.18 kcal Atomic # 7 Polarization: -125.07 SS G_CDS: -3.76 Total: -128.83 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.85 Total: -25.02 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -70.34 4.03 -66.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036218187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.985 kcal (2) G-P(sol) polarization free energy of solvation -70.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds