Wall clock time and date at job start Tue Mar 31 2020 14:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00036 * 2 1 4 4 C 1.50700 * 109.46998 * 180.02562 * 3 2 1 5 5 N 1.29930 * 125.38487 * 90.34340 * 4 3 2 6 6 C 1.36067 * 108.48494 * 180.16578 * 5 4 3 7 7 C 1.47412 * 126.45259 * 179.82755 * 6 5 4 8 8 O 1.21612 * 119.99928 * 173.13562 * 7 6 5 9 9 N 1.34774 * 120.00148 * 353.12903 * 7 6 5 10 10 C 1.46924 * 120.63025 * 354.52036 * 9 7 6 11 11 C 1.53188 * 108.77928 * 126.36576 * 10 9 7 12 12 C 1.53036 * 109.34008 * 54.61996 * 11 10 9 13 13 H 1.08992 * 109.46655 * 58.66911 * 12 11 10 14 14 N 1.46507 * 109.46127 * 178.63551 * 12 11 10 15 15 C 1.36939 * 119.99228 * 274.99462 * 14 12 11 16 16 H 1.07999 * 120.00280 * 0.02562 * 15 14 12 17 17 C 1.38816 * 119.99243 * 180.02562 * 15 14 12 18 18 N 1.31621 * 120.00350 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99489 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47206 * 59.99659 * 19 17 15 21 21 H 1.48502 * 109.47023 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47137 * 299.99410 * 19 17 15 23 23 C 1.53043 * 109.53786 * 298.68232 * 12 11 10 24 24 H 1.09007 * 109.49556 * 301.35006 * 23 12 11 25 25 C 1.52996 * 109.49987 * 181.28474 * 23 12 11 26 26 C 1.46924 * 120.63417 * 174.48954 * 9 7 6 27 27 C 1.36097 * 107.09590 * 359.56085 * 6 5 4 28 28 O 1.34056 * 125.37780 * 270.02059 * 4 3 2 29 29 H 1.09006 * 109.47307 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47248 * 300.00432 * 1 2 3 31 31 H 1.08997 * 109.47279 * 60.00207 * 1 2 3 32 32 H 1.08991 * 109.47487 * 60.00048 * 3 2 1 33 33 H 1.09001 * 109.47096 * 299.99158 * 3 2 1 34 34 H 1.08994 * 109.58773 * 6.57296 * 10 9 7 35 35 H 1.09007 * 109.58687 * 246.15469 * 10 9 7 36 36 H 1.09000 * 109.49951 * 174.58614 * 11 10 9 37 37 H 1.09000 * 109.49574 * 294.64672 * 11 10 9 38 38 H 0.96997 * 120.00165 * 94.99824 * 14 12 11 39 39 H 0.96998 * 119.99460 * 179.97438 * 18 17 15 40 40 H 1.08999 * 109.47362 * 300.13364 * 25 23 12 41 41 H 1.09004 * 109.47161 * 60.12956 * 25 23 12 42 42 H 1.08997 * 109.47145 * 180.12730 * 25 23 12 43 43 H 1.09004 * 109.58259 * 353.42179 * 26 9 7 44 44 H 1.08996 * 109.59046 * 113.70327 * 26 9 7 45 45 H 1.07999 * 126.52101 * 180.24401 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2626 1.1335 -1.0602 6 6 5.5601 1.0245 -0.6653 7 6 6.7388 0.9316 -1.5457 8 8 7.8574 0.9633 -1.0695 9 7 6.5768 0.8115 -2.8782 10 6 5.2363 0.6513 -3.4579 11 6 5.0322 1.7240 -4.5323 12 6 6.1712 1.6438 -5.5513 13 1 6.1887 0.6503 -5.9992 14 7 5.9613 2.6472 -6.5980 15 6 5.1581 2.3608 -7.6696 16 1 4.6792 1.3956 -7.7428 17 6 4.9597 3.3113 -8.6616 18 7 5.5429 4.4878 -8.5720 19 14 3.8635 2.9211 -10.1230 20 1 2.4926 2.6102 -9.6444 21 1 3.8156 4.0937 -11.0329 22 1 4.4105 1.7494 -10.8531 23 6 7.5052 1.9095 -4.8498 24 1 7.4802 2.8934 -4.3812 25 6 8.6399 1.8608 -5.8749 26 6 7.7372 0.8389 -3.7789 27 6 5.5653 1.0234 0.6957 28 8 4.2866 1.1245 1.0921 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8901 34 1 4.4844 0.7681 -2.6776 35 1 5.1484 -0.3377 -3.9077 36 1 4.0805 1.5573 -5.0368 37 1 5.0294 2.7095 -4.0666 38 1 6.3912 3.5142 -6.5320 39 1 5.4045 5.1518 -9.2655 40 1 8.6638 0.8772 -6.3441 41 1 8.4744 2.6227 -6.6367 42 1 9.5900 2.0478 -5.3745 43 1 8.6355 1.0795 -3.2103 44 1 7.8550 -0.1355 -4.2530 45 1 6.4329 0.9540 1.3351 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036243376.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:37 Heat of formation + Delta-G solvation = -51.505393 kcal Electronic energy + Delta-G solvation = -27919.295574 eV Core-core repulsion = 23938.834539 eV Total energy + Delta-G solvation = -3980.461035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.62626 -41.20408 -39.06225 -38.88294 -36.47145 -35.92766 -34.33238 -33.06680 -32.51911 -31.03194 -28.88806 -27.98036 -26.88358 -26.58065 -25.12942 -23.90043 -23.17700 -22.77745 -21.32393 -20.59820 -19.08673 -18.68442 -18.26187 -17.94627 -17.15240 -17.00390 -16.79104 -16.60548 -16.52860 -16.17054 -15.73240 -15.49007 -15.23424 -14.90798 -14.68827 -14.41291 -14.02067 -13.88211 -13.65634 -13.37147 -13.29192 -13.00266 -12.83707 -12.76766 -12.64830 -12.48289 -12.31527 -12.22082 -12.18896 -11.86030 -11.73994 -11.52248 -11.16889 -11.09071 -10.79109 -10.59986 -10.29958 -9.68974 -8.94927 -7.90295 -5.18061 -0.03279 0.65904 1.39421 1.48576 1.51126 1.57045 1.85417 2.09691 2.51099 2.58782 3.15459 3.41865 3.44471 3.69140 3.78436 3.81499 4.05725 4.08344 4.17351 4.23051 4.32808 4.36918 4.40742 4.47277 4.55130 4.57794 4.62919 4.64185 4.71940 4.76476 4.83045 4.93552 4.93903 5.02774 5.15031 5.25683 5.35691 5.46151 5.51566 5.55368 5.70565 6.01578 6.19445 6.31031 6.40369 6.94485 7.37336 8.12744 8.37446 9.33142 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011532 B = 0.003549 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.469141 B = 7888.170590 C = 9890.092642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.412 6.412 3 C 0.156 3.844 4 C 0.198 3.802 5 N -0.457 5.457 6 C -0.100 4.100 7 C 0.597 3.403 8 O -0.568 6.568 9 N -0.590 5.590 10 C 0.074 3.926 11 C -0.129 4.129 12 C 0.178 3.822 13 H 0.045 0.955 14 N -0.730 5.730 15 C -0.234 4.234 16 H 0.075 0.925 17 C -0.074 4.074 18 N -0.971 5.971 19 Si 0.969 3.031 20 H -0.278 1.278 21 H -0.298 1.298 22 H -0.279 1.279 23 C -0.099 4.099 24 H 0.053 0.947 25 C -0.128 4.128 26 C 0.125 3.875 27 C 0.048 3.952 28 O -0.184 6.184 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.152 0.848 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.039 0.961 38 H 0.371 0.629 39 H 0.249 0.751 40 H 0.058 0.942 41 H 0.041 0.959 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.641 -9.254 22.498 25.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.331 6.331 3 C 0.079 3.921 4 C -0.010 4.010 5 N -0.188 5.188 6 C -0.219 4.219 7 C 0.386 3.614 8 O -0.449 6.449 9 N -0.319 5.319 10 C -0.048 4.048 11 C -0.170 4.170 12 C 0.070 3.930 13 H 0.063 0.937 14 N -0.369 5.369 15 C -0.366 4.366 16 H 0.093 0.907 17 C -0.266 4.266 18 N -0.622 5.622 19 Si 0.799 3.201 20 H -0.205 1.205 21 H -0.225 1.225 22 H -0.205 1.205 23 C -0.119 4.119 24 H 0.071 0.929 25 C -0.186 4.186 26 C 0.003 3.997 27 C -0.026 4.026 28 O -0.069 6.069 29 H 0.116 0.884 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.168 0.832 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.202 0.798 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.087 0.913 43 H 0.110 0.890 44 H 0.102 0.898 45 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -6.338 -9.491 22.007 24.790 hybrid contribution -0.193 0.726 -0.719 1.039 sum -6.531 -8.766 21.288 23.931 Atomic orbital electron populations 1.23031 0.77462 1.04451 1.01897 1.87896 1.22822 1.26503 1.95906 1.20855 0.78695 0.86635 1.05888 1.26504 0.96569 0.99741 0.78221 1.70271 1.01438 1.17699 1.29428 1.21710 0.91649 1.14592 0.93988 1.17038 0.86485 0.76128 0.81798 1.90765 1.24997 1.53789 1.75367 1.48010 1.09364 1.69428 1.05134 1.22934 0.84438 0.98091 0.99360 1.22329 1.00277 0.97961 0.96453 1.20443 0.92277 0.92365 0.87923 0.93741 1.42555 1.57012 1.14890 1.22475 1.19563 1.19968 0.98582 0.98471 0.90719 1.25483 1.02957 0.96288 1.01919 1.69818 1.49678 1.06521 1.36188 0.85274 0.79013 0.76436 0.79424 1.20456 1.22470 1.20508 1.21598 0.96117 0.98421 0.95772 0.92882 1.21568 0.96960 1.02056 0.98024 1.21714 0.88460 0.99277 0.90265 1.25898 0.85519 0.96348 0.94862 1.84431 1.16979 1.68139 1.37326 0.88384 0.91571 0.92561 0.86677 0.87364 0.83167 0.91576 0.92126 0.94242 0.79766 0.94218 0.92305 0.93962 0.91332 0.89010 0.89813 0.71896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.48 16 2 O -0.41 -6.73 10.69 -148.98 -1.59 -8.32 16 3 C 0.16 2.09 6.56 71.24 0.47 2.56 16 4 C 0.20 4.02 7.93 88.39 0.70 4.72 16 5 N -0.46 -11.78 7.73 -293.04 -2.27 -14.05 16 6 C -0.10 -2.64 6.72 40.41 0.27 -2.37 16 7 C 0.60 18.58 7.68 86.66 0.67 19.24 16 8 O -0.57 -19.39 16.33 -4.07 -0.07 -19.46 16 9 N -0.59 -18.46 2.97 -822.81 -2.45 -20.91 16 10 C 0.07 2.31 6.33 86.36 0.55 2.86 16 11 C -0.13 -4.82 5.66 30.67 0.17 -4.64 16 12 C 0.18 7.19 2.19 45.02 0.10 7.29 16 13 H 0.04 1.82 8.08 -2.39 -0.02 1.80 16 14 N -0.73 -36.94 4.41 -322.80 -1.42 -38.36 16 15 C -0.23 -12.93 9.93 84.03 0.83 -12.09 16 16 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 17 C -0.07 -4.27 5.50 84.86 0.47 -3.81 16 18 N -0.97 -59.77 13.06 21.65 0.28 -59.48 16 19 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 21 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 23 C -0.10 -3.46 2.46 -10.72 -0.03 -3.48 16 24 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 25 C -0.13 -4.30 9.02 71.98 0.65 -3.65 16 26 C 0.13 3.80 5.70 86.36 0.49 4.29 16 27 C 0.05 0.91 11.95 67.32 0.80 1.72 16 28 O -0.18 -3.40 10.73 0.37 0.00 -3.40 16 29 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.15 4.56 3.66 -52.08 -0.19 4.37 16 35 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.37 20.44 7.51 -92.71 -0.70 19.75 16 39 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 40 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.04 1.69 7.37 -2.38 -0.02 1.67 16 42 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.09 2.76 7.04 -2.38 -0.02 2.74 16 44 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.27 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -72.80 371.00 2.04 -70.76 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.13 Total: 30.88 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 7.39 Total: 14.12 kcal Atomic # 7 Polarization: -126.95 SS G_CDS: -5.85 Total: -132.80 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -1.65 Total: -31.18 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -72.80 2.04 -70.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036243376.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.251 kcal (2) G-P(sol) polarization free energy of solvation -72.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds