Wall clock time and date at job start Tue Mar 31 2020 14:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00198 * 2 1 4 4 C 1.50705 * 109.47374 * 179.97438 * 3 2 1 5 5 N 1.29936 * 125.37395 * 89.99897 * 4 3 2 6 6 C 1.36064 * 108.47521 * 180.02562 * 5 4 3 7 7 C 1.47418 * 126.44931 * 179.97438 * 6 5 4 8 8 O 1.21610 * 119.99990 * 173.55267 * 7 6 5 9 9 N 1.34777 * 120.00179 * 353.55136 * 7 6 5 10 10 C 1.46924 * 120.63188 * 173.85268 * 9 7 6 11 11 C 1.53184 * 108.77616 * 233.58699 * 10 9 7 12 12 C 1.53038 * 109.31691 * 305.36818 * 11 10 9 13 13 H 1.09007 * 109.45855 * 301.34832 * 12 11 10 14 14 N 1.46495 * 109.46267 * 181.38830 * 12 11 10 15 15 C 1.36931 * 120.00527 * 84.93206 * 14 12 11 16 16 H 1.08000 * 120.00072 * 359.97438 * 15 14 12 17 17 C 1.38817 * 120.00521 * 180.02562 * 15 14 12 18 18 N 1.31618 * 119.99495 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00385 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46832 * 59.99905 * 19 17 15 21 21 H 1.48497 * 109.47102 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46965 * 300.00313 * 19 17 15 23 23 C 1.53043 * 109.53878 * 61.36267 * 12 11 10 24 24 H 1.08998 * 109.49234 * 58.59049 * 23 12 11 25 25 C 1.52998 * 109.49977 * 178.68849 * 23 12 11 26 26 C 1.46930 * 120.62658 * 353.83358 * 9 7 6 27 27 C 1.36094 * 107.10531 * 0.22453 * 6 5 4 28 28 O 1.34049 * 125.37786 * 270.04487 * 4 3 2 29 29 H 1.08998 * 109.46719 * 299.99890 * 1 2 3 30 30 H 1.08994 * 109.46860 * 59.99819 * 1 2 3 31 31 H 1.09002 * 109.47107 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47396 * 60.00114 * 3 2 1 33 33 H 1.09004 * 109.47067 * 300.00120 * 3 2 1 34 34 H 1.09008 * 109.58096 * 113.80021 * 10 9 7 35 35 H 1.09004 * 109.70579 * 353.44993 * 10 9 7 36 36 H 1.09007 * 109.49744 * 185.41327 * 11 10 9 37 37 H 1.08999 * 109.49895 * 65.31980 * 11 10 9 38 38 H 0.97005 * 119.99584 * 264.93194 * 14 12 11 39 39 H 0.96999 * 120.00181 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.47119 * 59.99674 * 25 23 12 41 41 H 1.08999 * 109.47146 * 180.02562 * 25 23 12 42 42 H 1.09004 * 109.46724 * 299.99903 * 25 23 12 43 43 H 1.08999 * 109.58832 * 6.62536 * 26 9 7 44 44 H 1.09003 * 109.58369 * 246.19812 * 26 9 7 45 45 H 1.07993 * 126.53183 * 179.76892 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2629 1.1268 -1.0585 6 6 5.5605 1.0235 -0.6625 7 6 6.7398 0.9293 -1.5420 8 8 7.8581 0.9589 -1.0649 9 7 6.5788 0.8101 -2.8748 10 6 7.7388 0.8501 -3.7756 11 6 7.4960 1.9197 -4.8450 12 6 6.1647 1.6411 -5.5465 13 1 6.1915 0.6480 -5.9952 14 7 5.9451 2.6430 -6.5925 15 6 6.4892 2.4650 -7.8364 16 1 7.0806 1.5860 -8.0463 17 6 6.2815 3.4147 -8.8273 18 7 5.5612 4.4861 -8.5713 19 14 7.0243 3.1721 -10.5240 20 1 6.5029 1.9145 -11.1173 21 1 6.6573 4.3185 -11.3935 22 1 8.5026 3.0899 -10.4100 23 6 5.0250 1.7095 -4.5275 24 1 5.0131 2.6943 -4.0606 25 6 3.6913 1.4632 -5.2356 26 6 5.2397 0.6374 -3.4545 27 6 5.5644 1.0180 0.6985 28 8 4.2858 1.1245 1.0939 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6887 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 7.8644 -0.1219 -4.2528 35 1 8.6362 1.0974 -3.2084 36 1 8.3046 1.8939 -5.5755 37 1 7.4608 2.9026 -4.3751 38 1 5.4142 3.4327 -6.4038 39 1 5.4157 5.1496 -9.2638 40 1 3.7036 0.4776 -5.7010 41 1 2.8798 1.5124 -4.5095 42 1 3.5403 2.2245 -6.0009 43 1 4.4868 0.7458 -2.6738 44 1 5.1617 -0.3518 -3.9055 45 1 6.4311 0.9440 1.3385 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036243381.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:43 Heat of formation + Delta-G solvation = -51.696245 kcal Electronic energy + Delta-G solvation = -28036.917732 eV Core-core repulsion = 24056.448421 eV Total energy + Delta-G solvation = -3980.469311 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.61614 -41.19549 -39.07961 -38.86183 -36.42735 -35.92479 -34.22102 -33.21512 -32.49441 -31.16759 -28.81377 -27.59192 -26.93789 -26.54672 -25.56370 -23.84699 -23.30241 -22.35557 -21.37735 -20.58252 -19.21107 -18.67216 -18.24466 -17.93550 -17.14751 -16.97900 -16.76140 -16.60093 -16.51974 -16.17519 -15.69454 -15.48244 -15.35471 -14.75274 -14.70660 -14.37507 -13.99482 -13.88558 -13.78515 -13.27359 -13.24733 -13.06113 -12.81907 -12.76972 -12.62558 -12.55257 -12.29599 -12.20479 -12.03298 -11.81838 -11.74007 -11.59727 -11.42419 -10.89289 -10.76734 -10.57468 -10.29308 -9.69407 -8.96636 -7.91119 -5.18704 -0.02686 0.66860 1.40751 1.47755 1.50170 1.55989 1.85500 2.09899 2.51750 2.58046 3.16988 3.41167 3.45012 3.70042 3.82166 3.83495 4.09108 4.11488 4.14067 4.25385 4.32351 4.36096 4.40971 4.49836 4.57222 4.58158 4.63599 4.66346 4.70657 4.77212 4.84795 4.96162 4.97652 5.04887 5.16842 5.28859 5.30871 5.46147 5.52840 5.59024 5.69527 6.04159 6.20105 6.30402 6.41245 6.94278 7.36786 8.12452 8.37055 9.32188 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015700 B = 0.003188 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.969766 B = 8779.743053 C =10136.911237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.412 6.412 3 C 0.156 3.844 4 C 0.200 3.800 5 N -0.454 5.454 6 C -0.100 4.100 7 C 0.596 3.404 8 O -0.571 6.571 9 N -0.590 5.590 10 C 0.120 3.880 11 C -0.138 4.138 12 C 0.178 3.822 13 H 0.045 0.955 14 N -0.729 5.729 15 C -0.235 4.235 16 H 0.074 0.926 17 C -0.075 4.075 18 N -0.970 5.970 19 Si 0.969 3.031 20 H -0.278 1.278 21 H -0.298 1.298 22 H -0.281 1.281 23 C -0.092 4.092 24 H 0.051 0.949 25 C -0.124 4.124 26 C 0.081 3.919 27 C 0.048 3.952 28 O -0.184 6.184 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.371 0.629 39 H 0.249 0.751 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.039 0.961 43 H 0.158 0.842 44 H 0.068 0.932 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.990 -9.447 22.893 26.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.331 6.331 3 C 0.079 3.921 4 C -0.009 4.009 5 N -0.186 5.186 6 C -0.219 4.219 7 C 0.385 3.615 8 O -0.452 6.452 9 N -0.320 5.320 10 C -0.003 4.003 11 C -0.179 4.179 12 C 0.069 3.931 13 H 0.063 0.937 14 N -0.368 5.368 15 C -0.366 4.366 16 H 0.092 0.908 17 C -0.267 4.267 18 N -0.621 5.621 19 Si 0.798 3.202 20 H -0.204 1.204 21 H -0.224 1.224 22 H -0.207 1.207 23 C -0.112 4.112 24 H 0.070 0.930 25 C -0.182 4.182 26 C -0.042 4.042 27 C -0.027 4.027 28 O -0.069 6.069 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.203 0.797 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.058 0.942 43 H 0.174 0.826 44 H 0.086 0.914 45 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -9.482 -9.674 22.373 26.154 hybrid contribution 0.675 0.778 -0.807 1.308 sum -8.807 -8.896 21.566 24.936 Atomic orbital electron populations 1.23029 0.77469 1.04416 1.01918 1.87900 1.22796 1.26496 1.95911 1.20871 0.78598 0.86647 1.05975 1.26527 0.96595 0.99615 0.78177 1.70237 1.01200 1.17733 1.29401 1.21666 0.91655 1.14624 0.93905 1.17079 0.86532 0.76106 0.81812 1.90767 1.25231 1.53796 1.75361 1.48017 1.09499 1.69375 1.05096 1.21636 0.88374 0.99605 0.90640 1.22460 1.00594 0.97723 0.97156 1.20454 0.92324 0.92225 0.88072 0.93747 1.42551 1.61793 1.23960 1.08535 1.19557 1.24266 1.03868 0.88956 0.90800 1.25481 1.02116 0.97220 1.01870 1.69809 1.45784 1.12310 1.34153 0.85280 0.78111 0.76611 0.80180 1.20396 1.22395 1.20727 1.21508 0.95855 0.98676 0.95174 0.93026 1.21524 0.95590 1.01374 0.99750 1.23017 0.84396 0.97705 0.99057 1.25872 0.85521 0.96391 0.94895 1.84436 1.16984 1.68111 1.37364 0.91685 0.92402 0.88460 0.86813 0.87065 0.90015 0.89695 0.91797 0.94088 0.79671 0.94189 0.92795 0.91020 0.94205 0.82619 0.91407 0.72080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.41 -6.15 10.69 -148.98 -1.59 -7.75 16 3 C 0.16 1.86 6.56 71.24 0.47 2.33 16 4 C 0.20 3.79 7.93 88.39 0.70 4.49 16 5 N -0.45 -11.04 7.74 -293.03 -2.27 -13.30 16 6 C -0.10 -2.56 6.72 40.41 0.27 -2.28 16 7 C 0.60 18.63 7.68 86.66 0.67 19.29 16 8 O -0.57 -19.92 16.34 -4.06 -0.07 -19.99 16 9 N -0.59 -18.54 2.97 -822.77 -2.45 -20.98 16 10 C 0.12 3.84 6.41 86.36 0.55 4.39 16 11 C -0.14 -5.24 5.66 30.67 0.17 -5.07 16 12 C 0.18 7.18 2.19 45.02 0.10 7.28 16 13 H 0.04 1.82 8.08 -2.38 -0.02 1.80 16 14 N -0.73 -36.90 4.41 -322.81 -1.42 -38.33 16 15 C -0.23 -13.01 9.93 84.04 0.83 -12.18 16 16 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 17 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 18 N -0.97 -59.64 13.06 21.65 0.28 -59.36 16 19 Si 0.97 46.54 29.55 68.60 2.03 48.56 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 22 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 23 C -0.09 -3.16 2.46 -10.71 -0.03 -3.19 16 24 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 25 C -0.12 -4.07 9.03 71.98 0.65 -3.42 16 26 C 0.08 2.38 5.61 86.36 0.48 2.86 16 27 C 0.05 0.88 11.95 67.32 0.80 1.69 16 28 O -0.18 -3.27 10.73 0.31 0.00 -3.27 16 29 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 35 H 0.08 2.74 7.05 -2.39 -0.02 2.73 16 36 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.37 20.40 7.50 -92.70 -0.70 19.71 16 39 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 40 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.04 1.55 7.36 -2.38 -0.02 1.54 16 43 H 0.16 4.38 3.67 -51.25 -0.19 4.20 16 44 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.26 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -73.16 371.01 2.05 -71.11 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: 0.13 Total: 29.49 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 7.39 Total: 13.81 kcal Atomic # 7 Polarization: -126.12 SS G_CDS: -5.85 Total: -131.97 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -1.66 Total: -31.00 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -73.16 2.05 -71.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036243381.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.417 kcal (2) G-P(sol) polarization free energy of solvation -73.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds