Wall clock time and date at job start Tue Mar 31 2020 14:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99807 * 2 1 4 4 C 1.50698 * 109.47141 * 180.02562 * 3 2 1 5 5 N 1.29933 * 125.37847 * 89.99478 * 4 3 2 6 6 C 1.36072 * 108.47924 * 179.97438 * 5 4 3 7 7 C 1.47425 * 126.45033 * 179.97438 * 6 5 4 8 8 O 1.21608 * 119.99687 * 173.10798 * 7 6 5 9 9 N 1.34773 * 119.99647 * 353.10404 * 7 6 5 10 10 C 1.46931 * 120.61100 * 352.83415 * 9 7 6 11 11 C 1.53184 * 108.77264 * 233.57797 * 10 9 7 12 12 C 1.53043 * 109.34054 * 305.40964 * 11 10 9 13 13 H 1.09000 * 109.45990 * 181.36705 * 12 11 10 14 14 N 1.46499 * 109.46012 * 301.34752 * 12 11 10 15 15 C 1.36936 * 119.99409 * 274.99539 * 14 12 11 16 16 H 1.08001 * 120.00375 * 359.97438 * 15 14 12 17 17 C 1.38815 * 119.99983 * 179.97438 * 15 14 12 18 18 N 1.31624 * 119.99609 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00520 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46848 * 59.99900 * 19 17 15 21 21 H 1.48497 * 109.47499 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47021 * 300.00348 * 19 17 15 23 23 C 1.53049 * 109.53578 * 61.35081 * 12 11 10 24 24 H 1.09005 * 109.49755 * 58.61596 * 23 12 11 25 25 C 1.52997 * 109.49574 * 178.68357 * 23 12 11 26 26 C 1.46927 * 120.62543 * 172.85551 * 9 7 6 27 27 C 1.36094 * 107.09894 * 0.23240 * 6 5 4 28 28 O 1.34055 * 125.38071 * 269.96042 * 4 3 2 29 29 H 1.09000 * 109.46967 * 299.99978 * 1 2 3 30 30 H 1.08997 * 109.47023 * 59.99308 * 1 2 3 31 31 H 1.08994 * 109.47076 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47734 * 60.00361 * 3 2 1 33 33 H 1.09005 * 109.47322 * 299.99745 * 3 2 1 34 34 H 1.08997 * 109.56263 * 113.80300 * 10 9 7 35 35 H 1.09006 * 109.61377 * 353.37750 * 10 9 7 36 36 H 1.09004 * 109.50002 * 185.44131 * 11 10 9 37 37 H 1.08999 * 109.50078 * 65.38020 * 11 10 9 38 38 H 0.96990 * 120.00300 * 94.99860 * 14 12 11 39 39 H 0.97003 * 119.99586 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.47234 * 60.00112 * 25 23 12 41 41 H 1.09006 * 109.47044 * 179.97438 * 25 23 12 42 42 H 1.08996 * 109.47457 * 299.99843 * 25 23 12 43 43 H 1.08998 * 109.58845 * 6.59894 * 26 9 7 44 44 H 1.09005 * 109.70361 * 246.25043 * 26 9 7 45 45 H 1.08003 * 126.52174 * 179.77287 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2620 1.1273 -1.0604 6 6 5.5601 1.0250 -0.6654 7 6 6.7388 0.9314 -1.5459 8 8 7.8575 0.9702 -1.0705 9 7 6.5765 0.8028 -2.8776 10 6 5.2398 0.5973 -3.4520 11 6 5.2712 -0.6510 -4.3394 12 6 6.3867 -0.5071 -5.3773 13 1 6.3950 -1.3836 -6.0252 14 7 6.1516 0.6935 -6.1831 15 6 5.3244 0.6355 -7.2729 16 1 4.8456 -0.2955 -7.5385 17 6 5.1011 1.7732 -8.0362 18 7 5.6850 2.9076 -7.7128 19 14 3.9733 1.6939 -9.5232 20 1 2.6142 1.2788 -9.0920 21 1 3.9030 3.0321 -10.1631 22 1 4.5065 0.7076 -10.4968 23 6 7.7360 -0.3867 -4.6651 24 1 7.9007 -1.2687 -4.0462 25 6 8.8536 -0.2759 -5.7041 26 6 7.7328 0.8651 -3.7820 27 6 5.5650 1.0196 0.6956 28 8 4.2868 1.1258 1.0920 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6887 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 4.9627 1.4647 -4.0511 35 1 4.5146 0.4576 -2.6503 36 1 4.3132 -0.7602 -4.8477 37 1 5.4586 -1.5306 -3.7235 38 1 6.5819 1.5295 -5.9449 39 1 5.5287 3.7027 -8.2460 40 1 8.6891 0.6068 -6.3220 41 1 9.8144 -0.1897 -5.1965 42 1 8.8537 -1.1654 -6.3340 43 1 8.6521 0.9024 -3.1977 44 1 7.6618 1.7542 -4.4086 45 1 6.4324 0.9465 1.3349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036243383.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:47 Heat of formation + Delta-G solvation = -25.835943 kcal Electronic energy + Delta-G solvation = -28345.381890 eV Core-core repulsion = 24366.033966 eV Total energy + Delta-G solvation = -3979.347924 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.62158 -39.81954 -38.27042 -37.60577 -35.21562 -34.04516 -32.69640 -31.63597 -31.28396 -29.08483 -28.11137 -26.62181 -26.04602 -25.10749 -23.55025 -23.08988 -21.94612 -21.43666 -19.94807 -18.47821 -17.46171 -17.36865 -17.24285 -16.72843 -16.25443 -16.08956 -15.90695 -15.50155 -14.96892 -14.45743 -14.32880 -13.90831 -13.87078 -13.39459 -13.20737 -13.18359 -12.90391 -12.74504 -12.45990 -12.24682 -11.94099 -11.69135 -11.36119 -11.35077 -11.15330 -10.89797 -10.77915 -10.68571 -10.41108 -10.21714 -10.18079 -10.12391 -9.76205 -9.55620 -9.44406 -9.26999 -8.82515 -8.12954 -6.90583 -5.73479 -3.01162 0.95315 1.74384 2.29689 3.13996 3.37139 3.43912 3.45217 3.50201 3.50661 3.94057 4.51829 4.59796 4.62173 4.77786 4.91055 4.96285 5.05426 5.28649 5.33504 5.34563 5.40962 5.46025 5.50309 5.60149 5.72358 5.75432 5.92625 6.01275 6.09012 6.15693 6.23573 6.34895 6.51044 6.57192 6.57606 6.63464 6.75592 6.86756 6.89014 7.04225 7.12118 7.32154 7.73271 7.77564 8.33413 8.45225 9.56551 10.14327 10.49727 11.49089 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010869 B = 0.004086 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.492892 B = 6851.321173 C = 8684.430506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.160 3.840 4 C 0.188 3.812 5 N -0.425 5.425 6 C -0.060 4.060 7 C 0.595 3.405 8 O -0.553 6.553 9 N -0.579 5.579 10 C 0.089 3.911 11 C -0.148 4.148 12 C 0.177 3.823 13 H 0.049 0.951 14 N -0.718 5.718 15 C -0.235 4.235 16 H 0.068 0.932 17 C -0.012 4.012 18 N -0.933 5.933 19 Si 0.904 3.096 20 H -0.287 1.287 21 H -0.293 1.293 22 H -0.287 1.287 23 C -0.108 4.108 24 H 0.065 0.935 25 C -0.137 4.137 26 C 0.118 3.882 27 C 0.016 3.984 28 O -0.191 6.191 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.383 0.617 39 H 0.254 0.746 40 H 0.071 0.929 41 H 0.043 0.957 42 H 0.053 0.947 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.938 -4.349 18.229 19.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.303 6.303 3 C 0.083 3.917 4 C -0.020 4.020 5 N -0.157 5.157 6 C -0.180 4.180 7 C 0.381 3.619 8 O -0.433 6.433 9 N -0.308 5.308 10 C -0.033 4.033 11 C -0.189 4.189 12 C 0.067 3.933 13 H 0.067 0.933 14 N -0.360 5.360 15 C -0.366 4.366 16 H 0.086 0.914 17 C -0.208 4.208 18 N -0.582 5.582 19 Si 0.735 3.265 20 H -0.214 1.214 21 H -0.219 1.219 22 H -0.214 1.214 23 C -0.128 4.128 24 H 0.084 0.916 25 C -0.195 4.195 26 C -0.004 4.004 27 C -0.058 4.058 28 O -0.077 6.077 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.098 0.902 35 H 0.138 0.862 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.219 0.781 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -5.626 -4.499 17.701 19.111 hybrid contribution -0.497 0.450 -0.242 0.713 sum -6.122 -4.049 17.460 18.940 Atomic orbital electron populations 1.22836 0.79307 1.03611 1.00595 1.87961 1.20822 1.25860 1.95612 1.20553 0.80809 0.86564 1.03810 1.25860 0.95453 1.01926 0.78751 1.70806 1.01142 1.15490 1.28258 1.21925 0.92117 1.10960 0.93023 1.16777 0.85912 0.77325 0.81851 1.90772 1.24024 1.53358 1.75103 1.47955 1.10131 1.68067 1.04661 1.22550 0.82450 0.99354 0.98910 1.22511 1.02067 0.96140 0.98178 1.20244 0.90319 0.91782 0.90947 0.93299 1.42448 1.55880 1.07197 1.30488 1.19183 1.19581 0.95183 1.02650 0.91359 1.24684 1.00847 0.95761 0.99512 1.69646 1.47361 0.99917 1.41279 0.86316 0.80670 0.76415 0.83050 1.21419 1.21853 1.21426 1.21696 0.97277 0.97218 0.96562 0.91636 1.21665 0.96191 1.03197 0.98402 1.21721 0.88274 0.98993 0.91417 1.25304 0.84774 1.00045 0.95673 1.84363 1.17097 1.68527 1.37694 0.93584 0.93106 0.88921 0.89956 0.88150 0.90230 0.86168 0.90908 0.93766 0.78144 0.93576 0.91036 0.93784 0.92808 0.89764 0.90400 0.75101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.91 10.69 -35.23 -0.38 -4.28 16 3 C 0.16 1.41 6.56 36.00 0.24 1.65 16 4 C 0.19 2.31 7.93 -13.08 -0.10 2.21 16 5 N -0.42 -6.36 7.83 -7.65 -0.06 -6.42 16 6 C -0.06 -0.91 6.67 -83.02 -0.55 -1.47 16 7 C 0.59 10.50 7.67 -12.52 -0.10 10.41 16 8 O -0.55 -10.53 16.32 5.27 0.09 -10.44 16 9 N -0.58 -10.49 2.97 -174.03 -0.52 -11.01 16 10 C 0.09 1.65 5.84 -3.71 -0.02 1.63 16 11 C -0.15 -2.74 5.78 -26.61 -0.15 -2.89 16 12 C 0.18 3.52 2.53 -67.88 -0.17 3.34 16 13 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 14 N -0.72 -17.16 3.64 -53.38 -0.19 -17.35 16 15 C -0.23 -6.29 9.93 -15.06 -0.15 -6.44 16 16 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 17 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 18 N -0.93 -27.57 13.06 55.49 0.72 -26.84 16 19 Si 0.90 22.11 29.55 -169.99 -5.02 17.09 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 C -0.11 -1.88 2.67 -90.50 -0.24 -2.12 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 C -0.14 -2.28 9.05 37.16 0.34 -1.95 16 26 C 0.12 2.13 5.43 -3.71 -0.02 2.11 16 27 C 0.02 0.19 11.95 29.96 0.36 0.55 16 28 O -0.19 -2.22 10.73 6.51 0.07 -2.15 16 29 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.71 7.74 -51.93 -0.40 1.31 16 35 H 0.12 2.13 4.12 -60.08 -0.25 1.88 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.38 9.80 5.93 -40.82 -0.24 9.55 16 39 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.07 1.37 7.54 -51.93 -0.39 0.98 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.08 1.48 7.00 -51.93 -0.36 1.12 16 44 H 0.08 1.53 6.64 -51.93 -0.35 1.19 16 45 H 0.23 1.95 8.06 -52.48 -0.42 1.53 16 LS Contribution 367.29 15.07 5.54 5.54 Total: -1.00 -32.68 367.29 -5.93 -38.61 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -6.61 Total: 9.36 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 0.44 Total: 7.91 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: -0.05 Total: -61.62 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.22 Total: -16.88 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.68 -5.93 -38.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036243383.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.771 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds