Wall clock time and date at job start Tue Mar 31 2020 14:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99807 * 2 1 4 4 C 1.50698 * 109.47141 * 180.02562 * 3 2 1 5 5 N 1.29933 * 125.37847 * 89.99478 * 4 3 2 6 6 C 1.36072 * 108.47924 * 179.97438 * 5 4 3 7 7 C 1.47425 * 126.45033 * 179.97438 * 6 5 4 8 8 O 1.21608 * 119.99687 * 173.10798 * 7 6 5 9 9 N 1.34773 * 119.99647 * 353.10404 * 7 6 5 10 10 C 1.46931 * 120.61100 * 352.83415 * 9 7 6 11 11 C 1.53184 * 108.77264 * 233.57797 * 10 9 7 12 12 C 1.53043 * 109.34054 * 305.40964 * 11 10 9 13 13 H 1.09000 * 109.45990 * 181.36705 * 12 11 10 14 14 N 1.46499 * 109.46012 * 301.34752 * 12 11 10 15 15 C 1.36936 * 119.99409 * 274.99539 * 14 12 11 16 16 H 1.08001 * 120.00375 * 359.97438 * 15 14 12 17 17 C 1.38815 * 119.99983 * 179.97438 * 15 14 12 18 18 N 1.31624 * 119.99609 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00520 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46848 * 59.99900 * 19 17 15 21 21 H 1.48497 * 109.47499 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47021 * 300.00348 * 19 17 15 23 23 C 1.53049 * 109.53578 * 61.35081 * 12 11 10 24 24 H 1.09005 * 109.49755 * 58.61596 * 23 12 11 25 25 C 1.52997 * 109.49574 * 178.68357 * 23 12 11 26 26 C 1.46927 * 120.62543 * 172.85551 * 9 7 6 27 27 C 1.36094 * 107.09894 * 0.23240 * 6 5 4 28 28 O 1.34055 * 125.38071 * 269.96042 * 4 3 2 29 29 H 1.09000 * 109.46967 * 299.99978 * 1 2 3 30 30 H 1.08997 * 109.47023 * 59.99308 * 1 2 3 31 31 H 1.08994 * 109.47076 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47734 * 60.00361 * 3 2 1 33 33 H 1.09005 * 109.47322 * 299.99745 * 3 2 1 34 34 H 1.08997 * 109.56263 * 113.80300 * 10 9 7 35 35 H 1.09006 * 109.61377 * 353.37750 * 10 9 7 36 36 H 1.09004 * 109.50002 * 185.44131 * 11 10 9 37 37 H 1.08999 * 109.50078 * 65.38020 * 11 10 9 38 38 H 0.96990 * 120.00300 * 94.99860 * 14 12 11 39 39 H 0.97003 * 119.99586 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.47234 * 60.00112 * 25 23 12 41 41 H 1.09006 * 109.47044 * 179.97438 * 25 23 12 42 42 H 1.08996 * 109.47457 * 299.99843 * 25 23 12 43 43 H 1.08998 * 109.58845 * 6.59894 * 26 9 7 44 44 H 1.09005 * 109.70361 * 246.25043 * 26 9 7 45 45 H 1.08003 * 126.52174 * 179.77287 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2620 1.1273 -1.0604 6 6 5.5601 1.0250 -0.6654 7 6 6.7388 0.9314 -1.5459 8 8 7.8575 0.9702 -1.0705 9 7 6.5765 0.8028 -2.8776 10 6 5.2398 0.5973 -3.4520 11 6 5.2712 -0.6510 -4.3394 12 6 6.3867 -0.5071 -5.3773 13 1 6.3950 -1.3836 -6.0252 14 7 6.1516 0.6935 -6.1831 15 6 5.3244 0.6355 -7.2729 16 1 4.8456 -0.2955 -7.5385 17 6 5.1011 1.7732 -8.0362 18 7 5.6850 2.9076 -7.7128 19 14 3.9733 1.6939 -9.5232 20 1 2.6142 1.2788 -9.0920 21 1 3.9030 3.0321 -10.1631 22 1 4.5065 0.7076 -10.4968 23 6 7.7360 -0.3867 -4.6651 24 1 7.9007 -1.2687 -4.0462 25 6 8.8536 -0.2759 -5.7041 26 6 7.7328 0.8651 -3.7820 27 6 5.5650 1.0196 0.6956 28 8 4.2868 1.1258 1.0920 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6887 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 4.9627 1.4647 -4.0511 35 1 4.5146 0.4576 -2.6503 36 1 4.3132 -0.7602 -4.8477 37 1 5.4586 -1.5306 -3.7235 38 1 6.5819 1.5295 -5.9449 39 1 5.5287 3.7027 -8.2460 40 1 8.6891 0.6068 -6.3220 41 1 9.8144 -0.1897 -5.1965 42 1 8.8537 -1.1654 -6.3340 43 1 8.6521 0.9024 -3.1977 44 1 7.6618 1.7542 -4.4086 45 1 6.4324 0.9465 1.3349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036243383.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:46 Heat of formation + Delta-G solvation = -49.352152 kcal Electronic energy + Delta-G solvation = -28346.401629 eV Core-core repulsion = 24366.033966 eV Total energy + Delta-G solvation = -3980.367663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.60707 -41.25087 -39.13804 -38.88995 -36.35507 -35.68080 -34.34819 -33.01000 -32.50790 -30.92876 -28.89367 -27.94721 -26.84108 -26.53182 -25.37652 -24.38828 -23.17273 -22.70218 -21.16639 -19.94730 -19.26553 -18.59370 -18.28285 -17.88499 -17.13405 -17.02153 -16.65198 -16.64369 -16.50708 -16.09593 -15.94127 -15.56817 -15.05608 -14.88195 -14.67052 -14.40737 -14.22595 -13.86426 -13.66772 -13.30640 -13.14785 -12.99808 -12.83291 -12.68650 -12.61024 -12.45094 -12.31375 -12.21337 -12.15397 -11.94409 -11.59375 -11.52008 -11.19103 -11.04384 -10.79295 -10.63124 -10.29054 -9.61575 -8.91227 -7.87327 -5.13805 -0.02910 0.68344 1.40546 1.49620 1.51507 1.57343 1.87695 2.10616 2.53487 2.60774 3.16528 3.43939 3.46821 3.69707 3.84090 3.87789 4.08807 4.10628 4.12826 4.22823 4.34709 4.40206 4.43893 4.50412 4.54511 4.58813 4.63140 4.64065 4.71125 4.79279 4.88817 4.92801 5.03507 5.11824 5.15247 5.24003 5.29127 5.42837 5.48411 5.59599 5.66319 6.01788 6.24477 6.33962 6.42685 6.96035 7.41277 8.17052 8.41804 9.35885 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010869 B = 0.004086 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.492892 B = 6851.321173 C = 8684.430506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.413 6.413 3 C 0.158 3.842 4 C 0.195 3.805 5 N -0.459 5.459 6 C -0.101 4.101 7 C 0.595 3.405 8 O -0.570 6.570 9 N -0.585 5.585 10 C 0.103 3.897 11 C -0.140 4.140 12 C 0.173 3.827 13 H 0.048 0.952 14 N -0.723 5.723 15 C -0.230 4.230 16 H 0.074 0.926 17 C -0.072 4.072 18 N -0.969 5.969 19 Si 0.966 3.034 20 H -0.280 1.280 21 H -0.300 1.300 22 H -0.281 1.281 23 C -0.098 4.098 24 H 0.085 0.915 25 C -0.130 4.130 26 C 0.123 3.877 27 C 0.049 3.951 28 O -0.184 6.184 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.041 0.959 35 H 0.134 0.866 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.373 0.627 39 H 0.247 0.753 40 H 0.040 0.960 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.053 0.947 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.805 -5.608 20.084 21.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C 0.081 3.919 4 C -0.014 4.014 5 N -0.191 5.191 6 C -0.220 4.220 7 C 0.384 3.616 8 O -0.451 6.451 9 N -0.315 5.315 10 C -0.019 4.019 11 C -0.181 4.181 12 C 0.064 3.936 13 H 0.066 0.934 14 N -0.364 5.364 15 C -0.362 4.362 16 H 0.091 0.909 17 C -0.264 4.264 18 N -0.620 5.620 19 Si 0.796 3.204 20 H -0.206 1.206 21 H -0.227 1.227 22 H -0.207 1.207 23 C -0.118 4.118 24 H 0.103 0.897 25 C -0.188 4.188 26 C 0.000 4.000 27 C -0.026 4.026 28 O -0.069 6.069 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.135 0.865 33 H 0.124 0.876 34 H 0.060 0.940 35 H 0.151 0.849 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.206 0.794 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.109 0.891 44 H 0.071 0.929 45 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -6.504 -5.808 19.571 21.425 hybrid contribution -0.253 0.802 -0.687 1.086 sum -6.757 -5.005 18.884 20.672 Atomic orbital electron populations 1.23032 0.77452 1.04446 1.01896 1.87903 1.22861 1.26565 1.95900 1.20839 0.78651 0.86601 1.05812 1.26509 0.96624 1.00090 0.78182 1.70615 1.01465 1.17143 1.29885 1.21712 0.91651 1.14670 0.94008 1.17068 0.86594 0.76312 0.81673 1.90745 1.24944 1.54141 1.75310 1.47964 1.09687 1.68667 1.05148 1.22349 0.83198 0.97607 0.98776 1.22395 1.00838 0.96976 0.97879 1.20442 0.92207 0.89974 0.91006 0.93431 1.42546 1.55341 1.08091 1.30431 1.19543 1.18775 0.95094 1.02783 0.90851 1.25400 1.02927 0.95645 1.02452 1.69812 1.49352 1.00377 1.42505 0.85322 0.79175 0.75897 0.80018 1.20646 1.22668 1.20734 1.21623 0.96015 0.97587 0.96537 0.89689 1.21592 0.97140 1.01995 0.98027 1.21608 0.88743 0.98291 0.91329 1.25889 0.85552 0.96377 0.94746 1.84419 1.16950 1.68158 1.37338 0.91428 0.92645 0.88412 0.86504 0.87562 0.94019 0.84907 0.91993 0.91651 0.79355 0.94377 0.94092 0.91340 0.92105 0.89072 0.92903 0.71804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -7.62 10.69 -148.98 -1.59 -9.22 16 3 C 0.16 2.44 6.56 71.24 0.47 2.91 16 4 C 0.19 4.44 7.93 88.39 0.70 5.14 16 5 N -0.46 -13.42 7.83 -293.02 -2.29 -15.72 16 6 C -0.10 -2.99 6.67 40.41 0.27 -2.72 16 7 C 0.59 20.74 7.67 86.66 0.66 21.41 16 8 O -0.57 -21.23 16.32 -4.06 -0.07 -21.30 16 9 N -0.59 -21.35 2.97 -822.78 -2.45 -23.79 16 10 C 0.10 3.87 5.84 86.36 0.50 4.38 16 11 C -0.14 -5.15 5.78 30.67 0.18 -4.97 16 12 C 0.17 6.83 2.53 45.02 0.11 6.94 16 13 H 0.05 1.90 8.08 -2.39 -0.02 1.89 16 14 N -0.72 -35.41 3.64 -322.79 -1.18 -36.59 16 15 C -0.23 -12.48 9.93 84.03 0.83 -11.65 16 16 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 17 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 18 N -0.97 -59.03 13.06 21.65 0.28 -58.75 16 19 Si 0.97 46.08 29.55 68.60 2.03 48.11 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 21 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 C -0.10 -3.35 2.67 -10.71 -0.03 -3.38 16 24 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 25 C -0.13 -4.25 9.05 71.98 0.65 -3.60 16 26 C 0.12 4.47 5.43 86.36 0.47 4.93 16 27 C 0.05 1.04 11.95 67.32 0.80 1.84 16 28 O -0.18 -3.78 10.73 0.38 0.00 -3.78 16 29 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.04 1.87 7.74 -2.39 -0.02 1.85 16 35 H 0.13 4.74 4.12 -18.48 -0.08 4.67 16 36 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 37 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.37 19.89 5.93 -92.72 -0.55 19.34 16 39 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 40 H 0.04 1.59 7.54 -2.39 -0.02 1.57 16 41 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.09 3.18 7.00 -2.39 -0.02 3.16 16 44 H 0.05 2.18 6.64 -2.38 -0.02 2.17 16 45 H 0.27 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -71.65 367.29 2.48 -69.17 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 0.40 Total: 32.71 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: 7.34 Total: 19.15 kcal Atomic # 7 Polarization: -129.21 SS G_CDS: -5.63 Total: -134.85 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -1.65 Total: -34.29 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -71.65 2.48 -69.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036243383.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.816 kcal (2) G-P(sol) polarization free energy of solvation -71.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds