Wall clock time and date at job start Tue Mar 31 2020 14:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00119 * 2 1 4 4 C 1.50704 * 109.47079 * 179.97438 * 3 2 1 5 5 N 1.30017 * 127.33382 * 270.14623 * 4 3 2 6 6 O 1.20660 * 112.29706 * 180.30105 * 5 4 3 7 7 C 1.33490 * 113.15706 * 359.71371 * 6 5 4 8 8 C 1.37360 * 106.34479 * 359.97438 * 7 6 5 9 9 C 1.47396 * 128.56666 * 179.97438 * 8 7 6 10 10 O 1.21602 * 119.99762 * 142.14022 * 9 8 7 11 11 N 1.34777 * 119.99955 * 322.14594 * 9 8 7 12 12 C 1.46925 * 120.63291 * 354.21881 * 11 9 8 13 13 C 1.52761 * 109.00836 * 233.58861 * 12 11 9 14 14 C 1.53036 * 109.38586 * 305.58656 * 13 12 11 15 15 H 1.09000 * 109.45909 * 181.26199 * 14 13 12 16 16 N 1.46499 * 109.46014 * 301.22391 * 14 13 12 17 17 C 1.36944 * 119.99777 * 275.06565 * 16 14 13 18 18 H 1.07995 * 120.00068 * 359.97438 * 17 16 14 19 19 C 1.38806 * 119.99790 * 180.02562 * 17 16 14 20 20 N 1.31623 * 120.00337 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99916 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46921 * 60.00222 * 21 19 17 23 23 H 1.48503 * 109.47274 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.47377 * 300.00267 * 21 19 17 25 25 C 1.53045 * 109.53555 * 61.24078 * 14 13 12 26 26 H 1.09002 * 109.49541 * 58.58577 * 25 14 13 27 27 C 1.52998 * 109.49611 * 178.68259 * 25 14 13 28 28 C 1.46930 * 120.62822 * 174.50595 * 11 9 8 29 29 H 1.09001 * 109.47168 * 300.00141 * 1 2 3 30 30 H 1.08998 * 109.46806 * 59.99940 * 1 2 3 31 31 H 1.08993 * 109.47701 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47346 * 59.99964 * 3 2 1 33 33 H 1.08997 * 109.47312 * 299.99946 * 3 2 1 34 34 H 1.08006 * 126.82553 * 179.97438 * 7 6 5 35 35 H 1.09005 * 109.58644 * 353.42428 * 12 11 9 36 36 H 1.08998 * 109.58871 * 113.84769 * 12 11 9 37 37 H 1.09000 * 109.56057 * 185.55291 * 13 12 11 38 38 H 1.08997 * 109.38856 * 65.51984 * 13 12 11 39 39 H 0.96999 * 120.00093 * 95.06751 * 16 14 13 40 40 H 0.96997 * 119.99864 * 179.97438 * 20 19 17 41 41 H 1.08996 * 109.47033 * 179.83724 * 27 25 14 42 42 H 1.08999 * 109.47563 * 299.84027 * 27 25 14 43 43 H 1.09000 * 109.46905 * 59.83824 * 27 25 14 44 44 H 1.09000 * 109.58200 * 246.14927 * 28 11 9 45 45 H 1.08995 * 109.59003 * 6.43431 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2980 1.1217 1.0348 6 8 5.4603 1.0362 0.7222 7 6 5.6490 1.0233 -0.5992 8 6 4.4023 1.1151 -1.1686 9 6 4.0449 1.1428 -2.5983 10 8 3.0460 0.5682 -2.9865 11 7 4.8253 1.8049 -3.4753 12 6 5.9631 2.6079 -3.0071 13 6 5.8403 4.0218 -3.5722 14 6 5.7054 3.9503 -5.0949 15 1 5.6402 4.9596 -5.5015 16 7 6.8760 3.2725 -5.6573 17 6 8.0169 3.9824 -5.9218 18 1 8.0534 5.0420 -5.7161 19 6 9.1259 3.3403 -6.4552 20 7 9.0812 2.0490 -6.7063 21 14 10.6818 4.3087 -6.8165 22 1 11.1891 4.9171 -5.5604 23 1 11.7127 3.3983 -7.3766 24 1 10.3808 5.3805 -7.7992 25 6 4.4402 3.1706 -5.4605 26 1 3.5712 3.6607 -5.0215 27 6 4.2887 3.1278 -6.9824 28 6 4.5505 1.7425 -4.9173 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8464 -0.8900 34 1 6.5940 0.9544 -1.1175 35 1 5.9575 2.6494 -1.9179 36 1 6.8942 2.1588 -3.3528 37 1 6.7289 4.5971 -3.3123 38 1 4.9584 4.5045 -3.1510 39 1 6.8431 2.3209 -5.8425 40 1 9.8561 1.6004 -7.0794 41 1 3.3891 2.5700 -7.2424 42 1 4.2103 4.1441 -7.3685 43 1 5.1588 2.6389 -7.4205 44 1 5.3640 1.2213 -5.4220 45 1 3.6144 1.2110 -5.0883 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036253783.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:50 Heat of formation + Delta-G solvation = 3.495208 kcal Electronic energy + Delta-G solvation = -28522.733848 eV Core-core repulsion = 24544.657818 eV Total energy + Delta-G solvation = -3978.076030 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.08459 -40.05037 -38.14609 -37.65972 -34.51407 -34.09708 -33.05990 -31.93050 -31.47263 -29.26927 -28.56602 -26.72797 -25.91458 -25.48616 -23.83182 -23.37253 -21.84826 -21.32836 -20.16784 -18.61637 -17.95897 -17.55338 -17.37799 -16.84587 -16.48311 -16.12127 -15.81935 -15.19728 -15.11603 -14.65172 -14.35568 -14.08983 -13.97770 -13.52975 -13.36186 -12.97385 -12.76732 -12.59833 -12.54354 -12.25727 -11.77688 -11.72706 -11.59860 -11.40042 -11.24537 -10.94592 -10.85375 -10.57407 -10.55578 -10.34886 -10.26786 -10.02290 -9.91484 -9.90783 -9.62100 -9.60063 -8.98438 -8.34551 -7.04466 -5.84910 -3.13779 1.06289 1.50254 2.71099 2.96583 3.19432 3.37912 3.43554 3.44344 3.57897 4.00896 4.23194 4.52293 4.63084 4.81573 4.93066 5.04240 5.10875 5.15141 5.22152 5.23870 5.29642 5.43311 5.44660 5.47328 5.50820 5.56124 5.65984 5.74586 5.86474 5.97716 6.00032 6.15555 6.25147 6.31807 6.43634 6.54895 6.60932 6.69281 6.84828 6.85499 6.92907 7.54593 7.62865 7.99830 8.22824 8.33604 9.45342 10.01093 10.36326 11.37264 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018371 B = 0.003424 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.772319 B = 8176.002899 C = 9109.933821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.148 3.852 4 C 0.056 3.944 5 N -0.340 5.340 6 O 0.105 5.895 7 C -0.009 4.009 8 C -0.227 4.227 9 C 0.589 3.411 10 O -0.532 6.532 11 N -0.592 5.592 12 C 0.104 3.896 13 C -0.149 4.149 14 C 0.179 3.821 15 H 0.052 0.948 16 N -0.719 5.719 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.010 4.010 20 N -0.932 5.932 21 Si 0.904 3.096 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.287 1.287 25 C -0.108 4.108 26 H 0.066 0.934 27 C -0.137 4.137 28 C 0.121 3.879 29 H 0.041 0.959 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.233 0.767 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.048 0.952 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.044 0.956 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.447 -0.083 11.423 16.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.296 6.296 3 C 0.070 3.930 4 C -0.106 4.106 5 N -0.045 5.045 6 O 0.041 5.959 7 C -0.091 4.091 8 C -0.234 4.234 9 C 0.376 3.624 10 O -0.409 6.409 11 N -0.324 5.324 12 C -0.018 4.018 13 C -0.190 4.190 14 C 0.068 3.932 15 H 0.070 0.930 16 N -0.361 5.361 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.206 4.206 20 N -0.580 5.580 21 Si 0.736 3.264 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.214 1.214 25 C -0.128 4.128 26 H 0.084 0.916 27 C -0.195 4.195 28 C -0.001 4.001 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.249 0.751 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.067 0.933 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.924 -0.440 12.472 17.966 hybrid contribution 0.907 0.504 -1.117 1.525 sum -12.016 0.065 11.355 16.533 Atomic orbital electron populations 1.22761 0.80232 1.03136 1.00098 1.87961 1.20120 1.26055 1.95427 1.20437 0.84408 0.86195 1.01935 1.24286 0.97206 1.02219 0.86896 1.73633 0.89600 1.17681 1.23569 1.84579 1.21396 1.66510 1.23445 1.26622 1.00515 0.98623 0.83300 1.22315 0.92697 1.12636 0.95767 1.16869 0.83030 0.79417 0.83102 1.90795 1.25842 1.45489 1.78820 1.47985 1.29801 1.47508 1.07114 1.21907 0.89127 0.92606 0.98188 1.22442 1.01208 0.95155 1.00241 1.20214 0.86850 0.95607 0.90521 0.93036 1.42473 1.09649 1.08919 1.75065 1.19163 0.90322 0.92579 1.34977 0.91305 1.24699 0.98240 0.95782 1.01921 1.69632 1.30357 1.07992 1.50060 0.86318 0.83317 0.78790 0.78018 1.21337 1.21792 1.21366 1.21708 0.98827 0.95628 0.96665 0.91580 1.21665 1.01664 1.01806 0.94387 1.21712 1.02553 0.97655 0.78175 0.94046 0.93536 0.89277 0.91294 0.90446 0.75128 0.91138 0.89267 0.90514 0.93330 0.78090 0.93421 0.93708 0.92761 0.90979 0.90284 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.17 10.69 -35.23 -0.38 -5.55 16 3 C 0.15 1.83 6.54 36.01 0.24 2.07 16 4 C 0.06 0.79 7.22 -79.76 -0.58 0.21 16 5 N -0.34 -4.67 12.01 34.78 0.42 -4.26 16 6 O 0.10 1.27 11.06 18.66 0.21 1.47 16 7 C -0.01 -0.10 10.00 30.41 0.30 0.20 16 8 C -0.23 -3.17 5.60 -102.89 -0.58 -3.75 16 9 C 0.59 9.43 7.66 -12.53 -0.10 9.34 16 10 O -0.53 -9.99 16.52 5.28 0.09 -9.91 16 11 N -0.59 -9.04 2.98 -174.31 -0.52 -9.56 16 12 C 0.10 1.50 5.28 -3.93 -0.02 1.48 16 13 C -0.15 -2.30 5.76 -26.83 -0.15 -2.45 16 14 C 0.18 3.13 2.53 -67.89 -0.17 2.96 16 15 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 16 N -0.72 -15.61 3.64 -53.39 -0.19 -15.81 16 17 C -0.24 -5.97 9.93 -15.06 -0.15 -6.12 16 18 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -26.11 13.06 55.49 0.72 -25.39 16 21 Si 0.90 21.12 29.55 -169.99 -5.02 16.10 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 C -0.11 -1.68 2.67 -90.50 -0.24 -1.92 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 27 C -0.14 -2.10 9.06 37.16 0.34 -1.76 16 28 C 0.12 1.93 5.43 -3.71 -0.02 1.91 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.23 1.89 7.30 -52.48 -0.38 1.50 16 35 H 0.07 0.85 4.71 -51.93 -0.24 0.60 16 36 H 0.09 1.46 7.74 -51.93 -0.40 1.06 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.38 8.94 5.92 -40.82 -0.24 8.70 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 1.28 7.53 -51.93 -0.39 0.89 16 44 H 0.08 1.38 6.64 -51.93 -0.34 1.04 16 45 H 0.09 1.39 6.99 -51.93 -0.36 1.02 16 LS Contribution 367.48 15.07 5.54 5.54 Total: -1.00 -30.89 367.48 -5.82 -36.71 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.56 Total: 7.42 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -0.11 Total: 3.22 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.43 Total: -55.01 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.08 Total: -13.98 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.89 -5.82 -36.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036253783.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.205 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds