Wall clock time and date at job start Tue Mar 31 2020 14:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00119 * 2 1 4 4 C 1.50704 * 109.47079 * 179.97438 * 3 2 1 5 5 N 1.30017 * 127.33382 * 270.14623 * 4 3 2 6 6 O 1.20660 * 112.29706 * 180.30105 * 5 4 3 7 7 C 1.33490 * 113.15706 * 359.71371 * 6 5 4 8 8 C 1.37360 * 106.34479 * 359.97438 * 7 6 5 9 9 C 1.47396 * 128.56666 * 179.97438 * 8 7 6 10 10 O 1.21602 * 119.99762 * 142.14022 * 9 8 7 11 11 N 1.34777 * 119.99955 * 322.14594 * 9 8 7 12 12 C 1.46925 * 120.63291 * 354.21881 * 11 9 8 13 13 C 1.52761 * 109.00836 * 233.58861 * 12 11 9 14 14 C 1.53036 * 109.38586 * 305.58656 * 13 12 11 15 15 H 1.09000 * 109.45909 * 181.26199 * 14 13 12 16 16 N 1.46499 * 109.46014 * 301.22391 * 14 13 12 17 17 C 1.36944 * 119.99777 * 275.06565 * 16 14 13 18 18 H 1.07995 * 120.00068 * 359.97438 * 17 16 14 19 19 C 1.38806 * 119.99790 * 180.02562 * 17 16 14 20 20 N 1.31623 * 120.00337 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99916 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46921 * 60.00222 * 21 19 17 23 23 H 1.48503 * 109.47274 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.47377 * 300.00267 * 21 19 17 25 25 C 1.53045 * 109.53555 * 61.24078 * 14 13 12 26 26 H 1.09002 * 109.49541 * 58.58577 * 25 14 13 27 27 C 1.52998 * 109.49611 * 178.68259 * 25 14 13 28 28 C 1.46930 * 120.62822 * 174.50595 * 11 9 8 29 29 H 1.09001 * 109.47168 * 300.00141 * 1 2 3 30 30 H 1.08998 * 109.46806 * 59.99940 * 1 2 3 31 31 H 1.08993 * 109.47701 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47346 * 59.99964 * 3 2 1 33 33 H 1.08997 * 109.47312 * 299.99946 * 3 2 1 34 34 H 1.08006 * 126.82553 * 179.97438 * 7 6 5 35 35 H 1.09005 * 109.58644 * 353.42428 * 12 11 9 36 36 H 1.08998 * 109.58871 * 113.84769 * 12 11 9 37 37 H 1.09000 * 109.56057 * 185.55291 * 13 12 11 38 38 H 1.08997 * 109.38856 * 65.51984 * 13 12 11 39 39 H 0.96999 * 120.00093 * 95.06751 * 16 14 13 40 40 H 0.96997 * 119.99864 * 179.97438 * 20 19 17 41 41 H 1.08996 * 109.47033 * 179.83724 * 27 25 14 42 42 H 1.08999 * 109.47563 * 299.84027 * 27 25 14 43 43 H 1.09000 * 109.46905 * 59.83824 * 27 25 14 44 44 H 1.09000 * 109.58200 * 246.14927 * 28 11 9 45 45 H 1.08995 * 109.59003 * 6.43431 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2980 1.1217 1.0348 6 8 5.4603 1.0362 0.7222 7 6 5.6490 1.0233 -0.5992 8 6 4.4023 1.1151 -1.1686 9 6 4.0449 1.1428 -2.5983 10 8 3.0460 0.5682 -2.9865 11 7 4.8253 1.8049 -3.4753 12 6 5.9631 2.6079 -3.0071 13 6 5.8403 4.0218 -3.5722 14 6 5.7054 3.9503 -5.0949 15 1 5.6402 4.9596 -5.5015 16 7 6.8760 3.2725 -5.6573 17 6 8.0169 3.9824 -5.9218 18 1 8.0534 5.0420 -5.7161 19 6 9.1259 3.3403 -6.4552 20 7 9.0812 2.0490 -6.7063 21 14 10.6818 4.3087 -6.8165 22 1 11.1891 4.9171 -5.5604 23 1 11.7127 3.3983 -7.3766 24 1 10.3808 5.3805 -7.7992 25 6 4.4402 3.1706 -5.4605 26 1 3.5712 3.6607 -5.0215 27 6 4.2887 3.1278 -6.9824 28 6 4.5505 1.7425 -4.9173 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8464 -0.8900 34 1 6.5940 0.9544 -1.1175 35 1 5.9575 2.6494 -1.9179 36 1 6.8942 2.1588 -3.3528 37 1 6.7289 4.5971 -3.3123 38 1 4.9584 4.5045 -3.1510 39 1 6.8431 2.3209 -5.8425 40 1 9.8561 1.6004 -7.0794 41 1 3.3891 2.5700 -7.2424 42 1 4.2103 4.1441 -7.3685 43 1 5.1588 2.6389 -7.4205 44 1 5.3640 1.2213 -5.4220 45 1 3.6144 1.2110 -5.0883 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036253783.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:49 Heat of formation + Delta-G solvation = -16.427236 kcal Electronic energy + Delta-G solvation = -28523.597750 eV Core-core repulsion = 24544.657818 eV Total energy + Delta-G solvation = -3978.939932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.09761 -41.33311 -39.20899 -38.86515 -35.95636 -35.20458 -34.53077 -33.16461 -32.83399 -30.92967 -29.45665 -27.92842 -26.94412 -26.70159 -25.46329 -24.66280 -23.13414 -22.34419 -21.35299 -19.93889 -19.25726 -18.95990 -18.60512 -18.01543 -17.37235 -17.27613 -16.78478 -16.60212 -16.22205 -16.12923 -15.82713 -15.57794 -15.04441 -14.88460 -14.77454 -14.33480 -14.11330 -13.63391 -13.58399 -13.40173 -13.04948 -12.95749 -12.81077 -12.70401 -12.54958 -12.51933 -12.37269 -12.14115 -11.96149 -11.90958 -11.55645 -11.37593 -11.22643 -11.13110 -10.88882 -10.79036 -10.64133 -9.65609 -8.88898 -7.85205 -5.11039 0.06513 0.47908 1.53312 1.54132 1.59546 1.60149 1.82961 2.13554 2.62938 2.64139 3.04433 3.29665 3.48467 3.54395 3.80800 3.87227 3.89732 4.01861 4.07252 4.11365 4.23941 4.32642 4.40275 4.45734 4.49705 4.51120 4.56690 4.61130 4.65030 4.72331 4.80829 4.85674 4.96611 5.03830 5.16338 5.22181 5.30388 5.31385 5.49871 5.61825 5.65000 6.03368 6.31626 6.36683 6.97008 7.04418 7.44974 8.20457 8.44553 9.37538 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018371 B = 0.003424 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.772319 B = 8176.002899 C = 9109.933821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.145 3.855 4 C 0.047 3.953 5 N -0.352 5.352 6 O 0.112 5.888 7 C 0.019 3.981 8 C -0.255 4.255 9 C 0.593 3.407 10 O -0.564 6.564 11 N -0.589 5.589 12 C 0.110 3.890 13 C -0.143 4.143 14 C 0.173 3.827 15 H 0.047 0.953 16 N -0.723 5.723 17 C -0.225 4.225 18 H 0.074 0.926 19 C -0.069 4.069 20 N -0.967 5.967 21 Si 0.960 3.040 22 H -0.279 1.279 23 H -0.304 1.304 24 H -0.285 1.285 25 C -0.099 4.099 26 H 0.084 0.916 27 C -0.132 4.132 28 C 0.126 3.874 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.263 0.737 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.375 0.625 40 H 0.247 0.753 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.041 0.959 44 H 0.059 0.941 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.036 1.089 12.859 18.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.328 6.328 3 C 0.068 3.932 4 C -0.115 4.115 5 N -0.057 5.057 6 O 0.048 5.952 7 C -0.062 4.062 8 C -0.263 4.263 9 C 0.382 3.618 10 O -0.445 6.445 11 N -0.320 5.320 12 C -0.012 4.012 13 C -0.184 4.184 14 C 0.064 3.936 15 H 0.065 0.935 16 N -0.365 5.365 17 C -0.357 4.357 18 H 0.092 0.908 19 C -0.262 4.262 20 N -0.618 5.618 21 Si 0.791 3.209 22 H -0.205 1.205 23 H -0.231 1.231 24 H -0.212 1.212 25 C -0.118 4.118 26 H 0.102 0.898 27 C -0.190 4.190 28 C 0.003 3.997 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.278 0.722 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.209 0.791 40 H 0.056 0.944 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.539 0.782 13.944 19.451 hybrid contribution 1.007 0.161 -1.539 1.846 sum -12.533 0.943 12.405 17.659 Atomic orbital electron populations 1.22968 0.78322 1.04205 1.01250 1.87905 1.22348 1.26903 1.95658 1.20550 0.83743 0.86041 1.02851 1.24602 0.98083 1.02005 0.86842 1.73633 0.90022 1.18306 1.23737 1.84579 1.20874 1.66003 1.23717 1.27110 1.00673 0.95685 0.82769 1.22178 0.93997 1.15335 0.94756 1.17053 0.82412 0.78557 0.83823 1.90774 1.27324 1.46806 1.79547 1.47971 1.29871 1.47430 1.06724 1.21877 0.87892 0.91640 0.99783 1.22319 1.02002 0.95832 0.98198 1.20418 0.86175 0.95127 0.91845 0.93527 1.42567 1.10137 1.08493 1.75267 1.19494 0.90923 0.92851 1.32472 0.90793 1.25318 1.00933 0.96521 1.03412 1.69777 1.30525 1.09343 1.52153 0.85414 0.80285 0.77342 0.77888 1.20500 1.23055 1.21194 1.21630 0.98329 0.95051 0.96823 0.89755 1.21600 1.01223 1.02039 0.94113 1.21572 1.01663 0.97731 0.78703 0.91943 0.93277 0.88354 0.89188 0.90609 0.72168 0.88263 0.91202 0.90980 0.91151 0.79135 0.94391 0.91725 0.92261 0.93961 0.92284 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.41 -10.86 10.69 -148.98 -1.59 -12.45 16 3 C 0.15 3.42 6.54 71.24 0.47 3.89 16 4 C 0.05 1.24 7.22 45.16 0.33 1.57 16 5 N -0.35 -9.03 12.01 -44.78 -0.54 -9.56 16 6 O 0.11 2.44 11.06 77.01 0.85 3.29 16 7 C 0.02 0.38 10.00 67.61 0.68 1.05 16 8 C -0.26 -6.69 5.60 -18.75 -0.10 -6.79 16 9 C 0.59 18.31 7.66 86.65 0.66 18.97 16 10 O -0.56 -20.98 16.52 -4.04 -0.07 -21.05 16 11 N -0.59 -17.21 2.98 -823.65 -2.45 -19.66 16 12 C 0.11 2.95 5.28 86.22 0.45 3.40 16 13 C -0.14 -4.07 5.76 30.53 0.18 -3.89 16 14 C 0.17 5.83 2.53 45.02 0.11 5.95 16 15 H 0.05 1.63 8.08 -2.39 -0.02 1.61 16 16 N -0.72 -31.25 3.64 -322.82 -1.18 -32.43 16 17 C -0.23 -11.13 9.93 84.03 0.83 -10.30 16 18 H 0.07 3.53 7.83 -2.91 -0.02 3.51 16 19 C -0.07 -3.67 5.50 84.86 0.47 -3.21 16 20 N -0.97 -55.11 13.06 21.65 0.28 -54.83 16 21 Si 0.96 43.51 29.55 68.60 2.03 45.53 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 24 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 25 C -0.10 -2.92 2.67 -10.72 -0.03 -2.95 16 26 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 27 C -0.13 -3.92 9.06 71.98 0.65 -3.27 16 28 C 0.13 3.94 5.43 86.36 0.47 4.41 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.26 3.39 7.30 -2.91 -0.02 3.36 16 35 H 0.10 2.09 4.71 -2.38 -0.01 2.07 16 36 H 0.07 2.20 7.74 -2.39 -0.02 2.19 16 37 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.37 17.71 5.92 -92.71 -0.55 17.16 16 40 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.04 1.51 7.53 -2.39 -0.02 1.49 16 44 H 0.06 2.10 6.64 -2.39 -0.02 2.09 16 45 H 0.09 2.71 6.99 -2.39 -0.02 2.69 16 Total: -1.00 -66.55 367.48 4.21 -62.34 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: 0.46 Total: 28.23 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 6.41 Total: 10.58 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -3.88 Total: -116.48 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.81 Total: -30.21 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -66.55 4.21 -62.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036253783.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.912 kcal (2) G-P(sol) polarization free energy of solvation -66.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds