Wall clock time and date at job start Tue Mar 31 2020 14:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 114.00242 * 2 1 4 4 C 1.50700 * 109.47331 * 180.02562 * 3 2 1 5 5 N 1.30017 * 127.33632 * 270.04186 * 4 3 2 6 6 O 1.20653 * 112.30087 * 179.97438 * 5 4 3 7 7 C 1.33489 * 113.16094 * 0.02562 * 6 5 4 8 8 C 1.37361 * 106.33873 * 359.97438 * 7 6 5 9 9 C 1.47396 * 128.56460 * 180.25484 * 8 7 6 10 10 O 1.21609 * 119.99824 * 132.45034 * 9 8 7 11 11 N 1.34780 * 120.00264 * 312.46083 * 9 8 7 12 12 C 1.46925 * 120.62732 * 3.97617 * 11 9 8 13 13 C 1.52764 * 109.00446 * 233.58638 * 12 11 9 14 14 C 1.53046 * 109.38395 * 305.58653 * 13 12 11 15 15 H 1.08996 * 109.46194 * 301.22581 * 14 13 12 16 16 N 1.46501 * 109.45965 * 181.26116 * 14 13 12 17 17 C 1.36936 * 119.99896 * 84.93322 * 16 14 13 18 18 H 1.08002 * 119.99669 * 0.02562 * 17 16 14 19 19 C 1.38812 * 119.99917 * 179.97438 * 17 16 14 20 20 N 1.31618 * 120.00230 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99917 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46922 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46732 * 119.99937 * 21 19 17 24 24 H 1.48490 * 109.47219 * 240.00126 * 21 19 17 25 25 C 1.53039 * 109.53164 * 61.24507 * 14 13 12 26 26 H 1.08997 * 109.50282 * 58.58906 * 25 14 13 27 27 C 1.53008 * 109.49269 * 178.68036 * 25 14 13 28 28 C 1.46928 * 120.62850 * 184.26015 * 11 9 8 29 29 H 1.09001 * 109.47182 * 59.99819 * 1 2 3 30 30 H 1.09000 * 109.46861 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47167 * 299.99692 * 1 2 3 32 32 H 1.08999 * 109.46833 * 60.00299 * 3 2 1 33 33 H 1.09005 * 109.47344 * 300.00355 * 3 2 1 34 34 H 1.07996 * 126.83169 * 180.02562 * 7 6 5 35 35 H 1.08998 * 109.58722 * 353.41934 * 12 11 9 36 36 H 1.09001 * 109.58333 * 113.85274 * 12 11 9 37 37 H 1.09007 * 109.56327 * 185.55670 * 13 12 11 38 38 H 1.08996 * 109.38810 * 65.51786 * 13 12 11 39 39 H 0.97003 * 119.99928 * 264.94141 * 16 14 13 40 40 H 0.96998 * 119.99931 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.46892 * 179.83823 * 27 25 14 42 42 H 1.09002 * 109.47075 * 299.83828 * 27 25 14 43 43 H 1.08999 * 109.46925 * 59.84166 * 27 25 14 44 44 H 1.09001 * 109.58513 * 246.15046 * 28 11 9 45 45 H 1.08990 * 109.59020 * 6.57945 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2990 1.1232 1.0328 6 8 5.4604 1.0310 0.7193 7 6 5.6480 1.0174 -0.6023 8 6 4.4015 1.1168 -1.1706 9 6 4.0426 1.1415 -2.6000 10 8 3.1447 0.4333 -3.0137 11 7 4.7097 1.9487 -3.4485 12 6 5.8530 2.7446 -2.9814 13 6 5.6204 4.2101 -3.3446 14 6 5.3462 4.3240 -4.8460 15 1 6.1938 3.9226 -5.4014 16 7 5.1527 5.7320 -5.2014 17 6 6.2358 6.5252 -5.4708 18 1 7.2328 6.1127 -5.4218 19 6 6.0525 7.8592 -5.8081 20 7 4.8375 8.3618 -5.8683 21 14 7.5302 8.9415 -6.1750 22 1 8.7747 8.1428 -6.0388 23 1 7.4279 9.4655 -7.5607 24 1 7.5625 10.0763 -5.2178 25 6 4.0850 3.5315 -5.1974 26 1 3.2418 3.9163 -4.6238 27 6 3.7932 3.6729 -6.6927 28 6 4.3036 2.0540 -4.8566 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 6.5921 0.9423 -1.1214 35 1 5.9478 2.6482 -1.8999 36 1 6.7649 2.3919 -3.4633 37 1 6.5054 4.7938 -3.0912 38 1 4.7630 4.5890 -2.7884 39 1 4.2572 6.1024 -5.2456 40 1 4.7094 9.2940 -6.1036 41 1 2.8965 3.1060 -6.9430 42 1 3.6377 4.7243 -6.9347 43 1 4.6374 3.2891 -7.2655 44 1 5.0866 1.6439 -5.4944 45 1 3.3766 1.5022 -5.0118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036253786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:52 Heat of formation + Delta-G solvation = 1.373337 kcal Electronic energy + Delta-G solvation = -28157.512399 eV Core-core repulsion = 24179.344358 eV Total energy + Delta-G solvation = -3978.168041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.18915 -40.15091 -38.17649 -37.67042 -34.79607 -34.24154 -33.13074 -32.03876 -31.54721 -29.42836 -28.62018 -26.84460 -25.96155 -25.46200 -24.06032 -22.74133 -21.79892 -21.46288 -20.31231 -19.39606 -18.07318 -17.79626 -17.15054 -17.05220 -16.52560 -16.25249 -15.90161 -15.31053 -15.12440 -14.97929 -14.32429 -14.12123 -13.83308 -13.71779 -13.39125 -13.01388 -12.80368 -12.63286 -12.51050 -12.37128 -11.88384 -11.79857 -11.69548 -11.61635 -11.24740 -11.00323 -10.87868 -10.72721 -10.48969 -10.42821 -10.21962 -10.17202 -9.97461 -9.85901 -9.71941 -9.69414 -8.96637 -8.61467 -7.02739 -5.83300 -3.12283 0.97405 1.43847 2.48922 2.78272 3.04320 3.38104 3.43771 3.46241 3.47903 3.92532 4.14580 4.47299 4.52365 4.71115 4.88441 4.91551 5.01562 5.11971 5.16461 5.17186 5.18953 5.26195 5.32990 5.43863 5.45106 5.46752 5.50946 5.61649 5.70484 5.86474 5.99968 6.06240 6.22573 6.29048 6.36364 6.43421 6.53712 6.72886 6.80375 6.85014 6.97210 7.32201 7.63448 7.91086 8.04534 8.34736 9.46450 10.03294 10.37949 11.39153 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.003109 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.250792 B = 9004.952767 C = 9508.855952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.379 6.379 3 C 0.145 3.855 4 C 0.058 3.942 5 N -0.336 5.336 6 O 0.107 5.893 7 C -0.017 4.017 8 C -0.224 4.224 9 C 0.591 3.409 10 O -0.525 6.525 11 N -0.597 5.597 12 C 0.097 3.903 13 C -0.152 4.152 14 C 0.184 3.816 15 H 0.049 0.951 16 N -0.720 5.720 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.904 3.096 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.111 4.111 26 H 0.069 0.931 27 C -0.136 4.136 28 C 0.122 3.878 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.230 0.770 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.043 0.957 42 H 0.074 0.926 43 H 0.051 0.949 44 H 0.070 0.930 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.139 -15.926 9.548 18.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.297 6.297 3 C 0.067 3.933 4 C -0.105 4.105 5 N -0.041 5.041 6 O 0.042 5.958 7 C -0.098 4.098 8 C -0.231 4.231 9 C 0.377 3.623 10 O -0.402 6.402 11 N -0.329 5.329 12 C -0.026 4.026 13 C -0.193 4.193 14 C 0.074 3.926 15 H 0.067 0.933 16 N -0.360 5.360 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.579 5.579 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.131 4.131 26 H 0.088 0.912 27 C -0.194 4.194 28 C 0.000 4.000 29 H 0.065 0.935 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.246 0.754 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.093 0.907 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.555 -16.364 10.577 19.651 hybrid contribution 0.414 1.196 -0.999 1.613 sum -2.141 -15.168 9.577 18.066 Atomic orbital electron populations 1.22777 0.80092 1.03165 1.00256 1.87947 1.20240 1.26010 1.95466 1.20465 0.84357 0.86205 1.02224 1.24275 0.97244 1.02237 0.86716 1.73639 0.89541 1.17432 1.23462 1.84577 1.21529 1.66396 1.23267 1.26430 1.00122 0.99705 0.83531 1.22284 0.92933 1.12214 0.95710 1.16899 0.81950 0.80248 0.83171 1.90821 1.30700 1.41316 1.77390 1.48046 1.31870 1.42546 1.10427 1.22032 0.87911 0.92976 0.99685 1.22618 1.02808 0.92773 1.01141 1.20193 0.94400 0.86517 0.91533 0.93293 1.42413 1.06942 1.04496 1.82197 1.19248 0.87533 0.91285 1.38915 0.91159 1.24733 0.96348 0.97176 1.02566 1.69664 1.19298 1.13931 1.55043 0.86160 0.81936 0.80740 0.77586 1.20567 1.21899 1.21924 1.21760 0.99895 0.93738 0.97669 0.91239 1.21658 1.00172 1.03348 0.94194 1.21775 1.01423 0.97396 0.79384 0.93486 0.89230 0.93912 0.91010 0.90461 0.75362 0.90441 0.90910 0.90351 0.92223 0.78210 0.93537 0.93761 0.90682 0.92960 0.91153 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.38 -5.02 10.69 -35.23 -0.38 -5.39 16 3 C 0.14 1.77 6.54 36.01 0.24 2.01 16 4 C 0.06 0.77 7.22 -79.77 -0.58 0.19 16 5 N -0.34 -4.38 12.01 34.78 0.42 -3.96 16 6 O 0.11 1.16 11.06 18.66 0.21 1.37 16 7 C -0.02 -0.15 10.03 30.41 0.30 0.15 16 8 C -0.22 -2.82 5.53 -102.90 -0.57 -3.39 16 9 C 0.59 8.50 7.66 -12.53 -0.10 8.41 16 10 O -0.53 -9.20 16.54 5.27 0.09 -9.11 16 11 N -0.60 -7.83 2.98 -174.31 -0.52 -8.35 16 12 C 0.10 1.13 5.92 -3.93 -0.02 1.10 16 13 C -0.15 -2.36 5.64 -26.83 -0.15 -2.51 16 14 C 0.18 3.25 2.20 -67.89 -0.15 3.11 16 15 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 16 N -0.72 -16.57 4.41 -53.38 -0.24 -16.80 16 17 C -0.24 -6.18 9.93 -15.06 -0.15 -6.33 16 18 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -27.06 13.06 55.49 0.72 -26.33 16 21 Si 0.90 21.54 29.55 -169.99 -5.02 16.51 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 C -0.11 -1.71 2.46 -90.50 -0.22 -1.93 16 26 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 27 C -0.14 -2.09 9.02 37.16 0.34 -1.75 16 28 C 0.12 1.65 5.71 -3.71 -0.02 1.63 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.23 1.10 7.54 -52.49 -0.40 0.71 16 35 H 0.08 0.76 4.48 -51.93 -0.23 0.52 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.38 9.61 7.50 -40.82 -0.31 9.31 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 1.37 7.36 -51.93 -0.38 0.99 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.09 1.27 7.03 -51.93 -0.36 0.90 16 LS Contribution 371.82 15.07 5.60 5.60 Total: -1.00 -32.69 371.82 -5.90 -38.59 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.72 Total: 6.19 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -0.07 Total: 1.68 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.39 Total: -55.44 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.08 Total: -13.13 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.69 -5.90 -38.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036253786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.968 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds