Wall clock time and date at job start Tue Mar 31 2020 14:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 114.00242 * 2 1 4 4 C 1.50700 * 109.47331 * 180.02562 * 3 2 1 5 5 N 1.30017 * 127.33632 * 270.04186 * 4 3 2 6 6 O 1.20653 * 112.30087 * 179.97438 * 5 4 3 7 7 C 1.33489 * 113.16094 * 0.02562 * 6 5 4 8 8 C 1.37361 * 106.33873 * 359.97438 * 7 6 5 9 9 C 1.47396 * 128.56460 * 180.25484 * 8 7 6 10 10 O 1.21609 * 119.99824 * 132.45034 * 9 8 7 11 11 N 1.34780 * 120.00264 * 312.46083 * 9 8 7 12 12 C 1.46925 * 120.62732 * 3.97617 * 11 9 8 13 13 C 1.52764 * 109.00446 * 233.58638 * 12 11 9 14 14 C 1.53046 * 109.38395 * 305.58653 * 13 12 11 15 15 H 1.08996 * 109.46194 * 301.22581 * 14 13 12 16 16 N 1.46501 * 109.45965 * 181.26116 * 14 13 12 17 17 C 1.36936 * 119.99896 * 84.93322 * 16 14 13 18 18 H 1.08002 * 119.99669 * 0.02562 * 17 16 14 19 19 C 1.38812 * 119.99917 * 179.97438 * 17 16 14 20 20 N 1.31618 * 120.00230 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99917 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46922 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46732 * 119.99937 * 21 19 17 24 24 H 1.48490 * 109.47219 * 240.00126 * 21 19 17 25 25 C 1.53039 * 109.53164 * 61.24507 * 14 13 12 26 26 H 1.08997 * 109.50282 * 58.58906 * 25 14 13 27 27 C 1.53008 * 109.49269 * 178.68036 * 25 14 13 28 28 C 1.46928 * 120.62850 * 184.26015 * 11 9 8 29 29 H 1.09001 * 109.47182 * 59.99819 * 1 2 3 30 30 H 1.09000 * 109.46861 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47167 * 299.99692 * 1 2 3 32 32 H 1.08999 * 109.46833 * 60.00299 * 3 2 1 33 33 H 1.09005 * 109.47344 * 300.00355 * 3 2 1 34 34 H 1.07996 * 126.83169 * 180.02562 * 7 6 5 35 35 H 1.08998 * 109.58722 * 353.41934 * 12 11 9 36 36 H 1.09001 * 109.58333 * 113.85274 * 12 11 9 37 37 H 1.09007 * 109.56327 * 185.55670 * 13 12 11 38 38 H 1.08996 * 109.38810 * 65.51786 * 13 12 11 39 39 H 0.97003 * 119.99928 * 264.94141 * 16 14 13 40 40 H 0.96998 * 119.99931 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.46892 * 179.83823 * 27 25 14 42 42 H 1.09002 * 109.47075 * 299.83828 * 27 25 14 43 43 H 1.08999 * 109.46925 * 59.84166 * 27 25 14 44 44 H 1.09001 * 109.58513 * 246.15046 * 28 11 9 45 45 H 1.08990 * 109.59020 * 6.57945 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2990 1.1232 1.0328 6 8 5.4604 1.0310 0.7193 7 6 5.6480 1.0174 -0.6023 8 6 4.4015 1.1168 -1.1706 9 6 4.0426 1.1415 -2.6000 10 8 3.1447 0.4333 -3.0137 11 7 4.7097 1.9487 -3.4485 12 6 5.8530 2.7446 -2.9814 13 6 5.6204 4.2101 -3.3446 14 6 5.3462 4.3240 -4.8460 15 1 6.1938 3.9226 -5.4014 16 7 5.1527 5.7320 -5.2014 17 6 6.2358 6.5252 -5.4708 18 1 7.2328 6.1127 -5.4218 19 6 6.0525 7.8592 -5.8081 20 7 4.8375 8.3618 -5.8683 21 14 7.5302 8.9415 -6.1750 22 1 8.7747 8.1428 -6.0388 23 1 7.4279 9.4655 -7.5607 24 1 7.5625 10.0763 -5.2178 25 6 4.0850 3.5315 -5.1974 26 1 3.2418 3.9163 -4.6238 27 6 3.7932 3.6729 -6.6927 28 6 4.3036 2.0540 -4.8566 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 6.5921 0.9423 -1.1214 35 1 5.9478 2.6482 -1.8999 36 1 6.7649 2.3919 -3.4633 37 1 6.5054 4.7938 -3.0912 38 1 4.7630 4.5890 -2.7884 39 1 4.2572 6.1024 -5.2456 40 1 4.7094 9.2940 -6.1036 41 1 2.8965 3.1060 -6.9430 42 1 3.6377 4.7243 -6.9347 43 1 4.6374 3.2891 -7.2655 44 1 5.0866 1.6439 -5.4944 45 1 3.3766 1.5022 -5.0118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036253786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:52 Heat of formation + Delta-G solvation = -21.131063 kcal Electronic energy + Delta-G solvation = -28158.488263 eV Core-core repulsion = 24179.344358 eV Total energy + Delta-G solvation = -3979.143905 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.09614 -41.28524 -39.16256 -38.87068 -36.23354 -35.23574 -34.51945 -33.24015 -32.84968 -31.05377 -29.49008 -27.95067 -26.96226 -26.75080 -25.42345 -24.04593 -23.12462 -22.36123 -21.48121 -20.61238 -19.09733 -18.95947 -18.69305 -18.06699 -17.40810 -17.30653 -16.81454 -16.75104 -16.22675 -16.18308 -15.67522 -15.47279 -15.22971 -14.88531 -14.78745 -14.24684 -13.95450 -13.66122 -13.64020 -13.43413 -13.14078 -12.97396 -12.87744 -12.77482 -12.59192 -12.55321 -12.43279 -12.06768 -12.05638 -11.83363 -11.66141 -11.37934 -11.23725 -11.13588 -10.92479 -10.84182 -10.63058 -9.74023 -8.94393 -7.89473 -5.16697 0.15625 0.49723 1.47185 1.49966 1.50772 1.59820 1.85894 2.16312 2.59316 2.62375 3.04007 3.29261 3.44399 3.53297 3.78925 3.83909 3.85503 3.98442 4.05007 4.09839 4.21452 4.29725 4.40022 4.43085 4.47303 4.49688 4.55464 4.59557 4.67766 4.77554 4.79228 4.80614 4.84033 4.97963 5.03452 5.19623 5.31770 5.41948 5.51178 5.58393 5.64099 5.97930 6.25926 6.32352 6.96195 7.08053 7.38807 8.15372 8.37591 9.34409 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.003109 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.250792 B = 9004.952767 C = 9508.855952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.143 3.857 4 C 0.038 3.962 5 N -0.354 5.354 6 O 0.115 5.885 7 C 0.020 3.980 8 C -0.257 4.257 9 C 0.595 3.405 10 O -0.564 6.564 11 N -0.594 5.594 12 C 0.104 3.896 13 C -0.144 4.144 14 C 0.179 3.821 15 H 0.055 0.945 16 N -0.733 5.733 17 C -0.225 4.225 18 H 0.081 0.919 19 C -0.079 4.079 20 N -0.972 5.972 21 Si 0.965 3.035 22 H -0.262 1.262 23 H -0.300 1.300 24 H -0.300 1.300 25 C -0.101 4.101 26 H 0.049 0.951 27 C -0.130 4.130 28 C 0.129 3.871 29 H 0.047 0.953 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.279 0.721 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.369 0.631 40 H 0.247 0.753 41 H 0.063 0.937 42 H 0.039 0.961 43 H 0.061 0.939 44 H 0.093 0.907 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.162 -17.677 10.211 20.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.325 6.325 3 C 0.065 3.935 4 C -0.124 4.124 5 N -0.058 5.058 6 O 0.050 5.950 7 C -0.061 4.061 8 C -0.265 4.265 9 C 0.383 3.617 10 O -0.443 6.443 11 N -0.325 5.325 12 C -0.018 4.018 13 C -0.185 4.185 14 C 0.070 3.930 15 H 0.073 0.927 16 N -0.371 5.371 17 C -0.357 4.357 18 H 0.099 0.901 19 C -0.270 4.270 20 N -0.624 5.624 21 Si 0.796 3.204 22 H -0.186 1.186 23 H -0.227 1.227 24 H -0.227 1.227 25 C -0.121 4.121 26 H 0.068 0.932 27 C -0.188 4.188 28 C 0.007 3.993 29 H 0.065 0.935 30 H 0.120 0.880 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.295 0.705 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.090 0.910 38 H 0.057 0.943 39 H 0.201 0.799 40 H 0.056 0.944 41 H 0.082 0.918 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.112 0.888 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.220 -18.160 11.269 21.373 hybrid contribution -0.311 1.661 -1.188 2.066 sum -0.531 -16.499 10.081 19.342 Atomic orbital electron populations 1.22982 0.78380 1.04330 1.01148 1.87898 1.22266 1.26678 1.95632 1.20515 0.84370 0.86047 1.02528 1.24544 0.97874 1.02724 0.87283 1.73638 0.90197 1.18208 1.23742 1.84560 1.20654 1.65689 1.24098 1.27248 1.00574 0.95757 0.82513 1.22188 0.94368 1.15302 0.94658 1.17064 0.81170 0.79670 0.83800 1.90799 1.32335 1.43051 1.78157 1.48069 1.32069 1.42234 1.10119 1.22121 0.88321 0.89778 1.01563 1.22411 1.01579 0.95746 0.98740 1.20456 0.95556 0.83931 0.93021 0.92695 1.42624 1.05598 1.06505 1.82399 1.19647 0.88585 0.91417 1.36061 0.90099 1.25477 0.98524 0.98853 1.04184 1.69824 1.21316 1.13675 1.57555 0.85177 0.79887 0.78916 0.76447 1.18573 1.22743 1.22743 1.21624 0.98088 0.94969 0.97416 0.93196 1.21575 1.01582 1.01350 0.94282 1.21676 1.02164 0.95303 0.80166 0.93466 0.87993 0.92120 0.89578 0.91206 0.70533 0.88055 0.87606 0.90985 0.94314 0.79920 0.94401 0.91801 0.94198 0.91970 0.88848 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.41 -10.76 10.69 -148.98 -1.59 -12.35 16 3 C 0.14 3.49 6.54 71.24 0.47 3.96 16 4 C 0.04 0.97 7.22 45.15 0.33 1.29 16 5 N -0.35 -8.64 12.01 -44.78 -0.54 -9.18 16 6 O 0.11 2.15 11.06 77.03 0.85 3.00 16 7 C 0.02 0.29 10.03 67.61 0.68 0.97 16 8 C -0.26 -5.94 5.53 -18.75 -0.10 -6.04 16 9 C 0.60 16.10 7.66 86.65 0.66 16.77 16 10 O -0.56 -19.43 16.54 -4.06 -0.07 -19.50 16 11 N -0.59 -14.04 2.98 -823.65 -2.45 -16.49 16 12 C 0.10 2.02 5.92 86.22 0.51 2.53 16 13 C -0.14 -4.19 5.64 30.53 0.17 -4.02 16 14 C 0.18 6.10 2.20 45.02 0.10 6.20 16 15 H 0.06 1.84 8.08 -2.39 -0.02 1.82 16 16 N -0.73 -33.89 4.41 -322.81 -1.42 -35.31 16 17 C -0.23 -11.55 9.93 84.03 0.83 -10.71 16 18 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 19 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 20 N -0.97 -58.06 13.06 21.65 0.28 -57.77 16 21 Si 0.97 44.44 29.55 68.60 2.03 46.47 16 22 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 24 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 25 C -0.10 -3.04 2.46 -10.71 -0.03 -3.07 16 26 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 27 C -0.13 -3.93 9.02 71.98 0.65 -3.28 16 28 C 0.13 3.21 5.71 86.36 0.49 3.70 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.28 0.90 7.54 -2.91 -0.02 0.88 16 35 H 0.10 1.51 4.48 -2.39 -0.01 1.50 16 36 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 38 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.37 19.12 7.50 -92.71 -0.70 18.42 16 40 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 41 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.04 1.48 7.36 -2.39 -0.02 1.47 16 43 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.08 2.26 7.03 -2.39 -0.02 2.24 16 Total: -1.00 -73.51 371.82 3.88 -69.64 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.31 Total: 25.33 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 6.48 Total: 6.19 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -4.13 Total: -118.76 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.81 Total: -28.85 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -73.51 3.88 -69.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036253786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.506 kcal (2) G-P(sol) polarization free energy of solvation -73.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds