Wall clock time and date at job start Tue Mar 31 2020 14:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00080 * 2 1 4 4 C 1.50695 * 109.47550 * 180.02562 * 3 2 1 5 5 N 1.30017 * 127.33415 * 269.68540 * 4 3 2 6 6 O 1.20661 * 112.29891 * 180.25979 * 5 4 3 7 7 C 1.33486 * 113.16105 * 359.97438 * 6 5 4 8 8 C 1.37370 * 106.33943 * 0.02562 * 7 6 5 9 9 C 1.47393 * 128.56354 * 179.97438 * 8 7 6 10 10 O 1.21608 * 120.00181 * 215.35444 * 9 8 7 11 11 N 1.34778 * 120.00318 * 35.35378 * 9 8 7 12 12 C 1.46927 * 120.62820 * 5.84307 * 11 9 8 13 13 C 1.53189 * 108.77712 * 126.36786 * 12 11 9 14 14 C 1.53049 * 109.31130 * 54.63513 * 13 12 11 15 15 H 1.09004 * 109.45616 * 178.61572 * 14 13 12 16 16 N 1.46499 * 109.46088 * 58.65670 * 14 13 12 17 17 C 1.36930 * 120.00138 * 84.99861 * 16 14 13 18 18 H 1.08000 * 119.99986 * 0.02562 * 17 16 14 19 19 C 1.38815 * 120.00315 * 179.97438 * 17 16 14 20 20 N 1.31617 * 119.99404 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00360 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47156 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47316 * 119.99684 * 21 19 17 24 24 H 1.48500 * 109.47261 * 240.00119 * 21 19 17 25 25 C 1.53043 * 109.53653 * 298.63279 * 14 13 12 26 26 H 1.08995 * 109.49998 * 301.41745 * 25 14 13 27 27 C 1.52996 * 109.49415 * 181.31658 * 25 14 13 28 28 C 1.46924 * 120.63348 * 185.56191 * 11 9 8 29 29 H 1.08999 * 109.47132 * 60.00050 * 1 2 3 30 30 H 1.08999 * 109.46837 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47296 * 299.99747 * 1 2 3 32 32 H 1.08998 * 109.46795 * 59.99753 * 3 2 1 33 33 H 1.09002 * 109.46970 * 300.00077 * 3 2 1 34 34 H 1.07994 * 126.83290 * 180.02562 * 7 6 5 35 35 H 1.09008 * 109.58550 * 246.15547 * 12 11 9 36 36 H 1.08997 * 109.59091 * 6.57786 * 12 11 9 37 37 H 1.08998 * 109.49603 * 174.58353 * 13 12 11 38 38 H 1.08999 * 109.49601 * 294.68592 * 13 12 11 39 39 H 0.97002 * 119.99785 * 265.00569 * 16 14 13 40 40 H 0.97002 * 119.99852 * 180.02562 * 20 19 17 41 41 H 1.08999 * 109.47271 * 60.00778 * 27 25 14 42 42 H 1.09006 * 109.47028 * 180.02562 * 27 25 14 43 43 H 1.09000 * 109.47442 * 300.00156 * 27 25 14 44 44 H 1.09005 * 109.58590 * 353.41888 * 28 11 9 45 45 H 1.09003 * 109.58826 * 113.84385 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2994 1.1298 1.0328 6 8 5.4612 1.0413 0.7193 7 6 5.6485 1.0232 -0.6023 8 6 4.4013 1.1161 -1.1706 9 6 4.0424 1.1396 -2.6000 10 8 3.1098 1.8203 -2.9816 11 7 4.7479 0.4066 -3.4841 12 6 5.7935 -0.5177 -3.0247 13 6 5.5142 -1.9068 -3.6070 14 6 5.3921 -1.8024 -5.1290 15 1 5.2178 -2.7934 -5.5482 16 7 6.6315 -1.2502 -5.6814 17 6 7.6878 -2.0776 -5.9544 18 1 7.6071 -3.1374 -5.7628 19 6 8.8620 -1.5545 -6.4783 20 7 8.9601 -0.2630 -6.7122 21 14 10.3028 -2.6833 -6.8513 22 1 9.9407 -4.0803 -6.5008 23 1 10.6318 -2.6047 -8.2972 24 1 11.4813 -2.2625 -6.0517 25 6 4.2209 -0.8844 -5.4867 26 1 3.3023 -1.2816 -5.0550 27 6 4.0792 -0.8067 -7.0081 28 6 4.4817 0.5122 -4.9252 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 6.5926 0.9500 -1.1214 35 1 6.7673 -0.1670 -3.3668 36 1 5.7832 -0.5691 -1.9360 37 1 6.3337 -2.5791 -3.3531 38 1 4.5834 -2.2944 -3.1931 39 1 6.7039 -0.2983 -5.8537 40 1 9.7805 0.1026 -7.0786 41 1 3.8937 -1.8039 -7.4071 42 1 3.2452 -0.1524 -7.2624 43 1 4.9977 -0.4080 -7.4387 44 1 3.6061 1.1402 -5.0900 45 1 5.3463 0.9486 -5.4255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036253789.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:56 Heat of formation + Delta-G solvation = 2.833971 kcal Electronic energy + Delta-G solvation = -28619.232305 eV Core-core repulsion = 24641.127602 eV Total energy + Delta-G solvation = -3978.104703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.08993 -40.05558 -38.18385 -37.66987 -34.52387 -34.10441 -33.07326 -31.93018 -31.44605 -29.24931 -28.57610 -26.73243 -25.92168 -25.48853 -23.83330 -23.37561 -21.85303 -21.31692 -20.19072 -18.61085 -17.95938 -17.55312 -17.35176 -16.86888 -16.49850 -16.13132 -15.85134 -15.21825 -15.11744 -14.64102 -14.36132 -14.08714 -13.95845 -13.53762 -13.34621 -12.96432 -12.76348 -12.60577 -12.55336 -12.23412 -11.79991 -11.75323 -11.58896 -11.38429 -11.23364 -10.96433 -10.84234 -10.57255 -10.53710 -10.33537 -10.19966 -10.09970 -9.89515 -9.89035 -9.63283 -9.59795 -8.98436 -8.34454 -7.03267 -5.84510 -3.12973 1.04242 1.50284 2.70040 2.96018 3.26064 3.37879 3.44823 3.46360 3.49255 4.02837 4.22857 4.53128 4.62614 4.80470 4.95418 5.04801 5.11224 5.15092 5.20165 5.25377 5.31386 5.43604 5.44273 5.46729 5.51971 5.59221 5.67734 5.76568 5.88023 5.98598 6.01009 6.16248 6.27060 6.33734 6.45575 6.55904 6.63231 6.71308 6.80293 6.86753 6.94124 7.54597 7.64990 7.99498 8.20772 8.34052 9.46031 10.01906 10.37276 11.37864 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016787 B = 0.003569 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.515754 B = 7843.030647 C = 8673.424336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.140 3.860 4 C 0.059 3.941 5 N -0.341 5.341 6 O 0.105 5.895 7 C -0.009 4.009 8 C -0.229 4.229 9 C 0.594 3.406 10 O -0.542 6.542 11 N -0.590 5.590 12 C 0.103 3.897 13 C -0.149 4.149 14 C 0.178 3.822 15 H 0.052 0.948 16 N -0.719 5.719 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.011 4.011 20 N -0.932 5.932 21 Si 0.904 3.096 22 H -0.281 1.281 23 H -0.293 1.293 24 H -0.292 1.292 25 C -0.109 4.109 26 H 0.066 0.934 27 C -0.137 4.137 28 C 0.121 3.879 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.233 0.767 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.054 0.946 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.355 2.314 11.428 16.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.303 6.303 3 C 0.063 3.937 4 C -0.103 4.103 5 N -0.046 5.046 6 O 0.041 5.959 7 C -0.090 4.090 8 C -0.236 4.236 9 C 0.381 3.619 10 O -0.421 6.421 11 N -0.321 5.321 12 C -0.019 4.019 13 C -0.190 4.190 14 C 0.068 3.932 15 H 0.070 0.930 16 N -0.361 5.361 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.207 4.207 20 N -0.580 5.580 21 Si 0.735 3.265 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.220 1.220 25 C -0.129 4.129 26 H 0.085 0.915 27 C -0.195 4.195 28 C -0.001 4.001 29 H 0.065 0.935 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.249 0.751 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.219 0.781 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.810 2.374 12.485 18.045 hybrid contribution 0.865 -0.197 -1.101 1.414 sum -11.945 2.177 11.384 16.644 Atomic orbital electron populations 1.22777 0.80080 1.03149 1.00296 1.87924 1.20308 1.26476 1.95549 1.20589 0.84385 0.85973 1.02752 1.24269 0.97212 1.02011 0.86849 1.73639 0.89603 1.17751 1.23578 1.84581 1.21459 1.66471 1.23416 1.26671 1.00711 0.98289 0.83331 1.22296 0.92855 1.12667 0.95790 1.16820 0.82039 0.79987 0.83024 1.90746 1.28957 1.43067 1.79293 1.47953 1.36521 1.40637 1.07022 1.22040 0.91319 0.90258 0.98322 1.22513 1.00921 0.95496 1.00093 1.20222 0.86650 0.95705 0.90630 0.92998 1.42482 1.10213 1.07927 1.75498 1.19265 0.91711 0.90977 1.34879 0.91180 1.24697 0.98161 0.95832 1.02041 1.69653 1.27230 1.10506 1.50660 0.86173 0.82912 0.79776 0.77634 1.20631 1.21984 1.21963 1.21632 0.99026 0.95623 0.96608 0.91529 1.21662 1.01983 1.01472 0.94353 1.21626 1.02420 0.97878 0.78130 0.93479 0.89242 0.93883 0.91202 0.89312 0.75054 0.89218 0.91047 0.90537 0.93156 0.78125 0.93561 0.92737 0.93725 0.91001 0.89566 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.08 10.69 -35.23 -0.38 -5.46 16 3 C 0.14 1.75 6.54 36.00 0.24 1.99 16 4 C 0.06 0.83 7.22 -79.77 -0.58 0.25 16 5 N -0.34 -4.69 12.01 34.78 0.42 -4.28 16 6 O 0.10 1.27 11.06 18.67 0.21 1.47 16 7 C -0.01 -0.10 9.98 30.42 0.30 0.21 16 8 C -0.23 -3.20 5.67 -102.89 -0.58 -3.79 16 9 C 0.59 9.54 7.66 -12.53 -0.10 9.45 16 10 O -0.54 -9.93 15.73 5.27 0.08 -9.84 16 11 N -0.59 -9.17 2.98 -174.31 -0.52 -9.69 16 12 C 0.10 1.52 5.24 -3.71 -0.02 1.50 16 13 C -0.15 -2.38 5.78 -26.61 -0.15 -2.53 16 14 C 0.18 3.19 2.53 -67.88 -0.17 3.02 16 15 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 16 N -0.72 -15.73 3.64 -53.38 -0.19 -15.92 16 17 C -0.24 -5.95 9.93 -15.06 -0.15 -6.10 16 18 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -26.13 13.06 55.49 0.72 -25.41 16 21 Si 0.90 21.20 29.55 -169.99 -5.02 16.17 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 C -0.11 -1.72 2.66 -90.72 -0.24 -1.96 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 C -0.14 -2.11 9.05 37.16 0.34 -1.78 16 28 C 0.12 1.95 5.40 -3.93 -0.02 1.93 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.13 7.33 -51.93 -0.38 0.75 16 34 H 0.23 1.90 7.09 -52.49 -0.37 1.53 16 35 H 0.09 1.48 7.74 -51.92 -0.40 1.08 16 36 H 0.07 0.90 4.57 -51.93 -0.24 0.66 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.38 8.97 5.94 -40.82 -0.24 8.72 16 40 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 1.28 7.54 -51.93 -0.39 0.89 16 44 H 0.09 1.39 7.00 -51.93 -0.36 1.03 16 45 H 0.08 1.38 6.64 -51.93 -0.34 1.04 16 LS Contribution 365.55 15.07 5.51 5.51 Total: -1.00 -30.62 365.55 -5.80 -36.42 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -6.50 Total: 7.83 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -0.12 Total: 3.19 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.43 Total: -55.29 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.09 Total: -13.83 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.62 -5.80 -36.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036253789.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.251 kcal (2) G-P(sol) polarization free energy of solvation -30.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds