Wall clock time and date at job start Tue Mar 31 2020 14:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00080 * 2 1 4 4 C 1.50695 * 109.47550 * 180.02562 * 3 2 1 5 5 N 1.30017 * 127.33415 * 269.68540 * 4 3 2 6 6 O 1.20661 * 112.29891 * 180.25979 * 5 4 3 7 7 C 1.33486 * 113.16105 * 359.97438 * 6 5 4 8 8 C 1.37370 * 106.33943 * 0.02562 * 7 6 5 9 9 C 1.47393 * 128.56354 * 179.97438 * 8 7 6 10 10 O 1.21608 * 120.00181 * 215.35444 * 9 8 7 11 11 N 1.34778 * 120.00318 * 35.35378 * 9 8 7 12 12 C 1.46927 * 120.62820 * 5.84307 * 11 9 8 13 13 C 1.53189 * 108.77712 * 126.36786 * 12 11 9 14 14 C 1.53049 * 109.31130 * 54.63513 * 13 12 11 15 15 H 1.09004 * 109.45616 * 178.61572 * 14 13 12 16 16 N 1.46499 * 109.46088 * 58.65670 * 14 13 12 17 17 C 1.36930 * 120.00138 * 84.99861 * 16 14 13 18 18 H 1.08000 * 119.99986 * 0.02562 * 17 16 14 19 19 C 1.38815 * 120.00315 * 179.97438 * 17 16 14 20 20 N 1.31617 * 119.99404 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00360 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47156 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47316 * 119.99684 * 21 19 17 24 24 H 1.48500 * 109.47261 * 240.00119 * 21 19 17 25 25 C 1.53043 * 109.53653 * 298.63279 * 14 13 12 26 26 H 1.08995 * 109.49998 * 301.41745 * 25 14 13 27 27 C 1.52996 * 109.49415 * 181.31658 * 25 14 13 28 28 C 1.46924 * 120.63348 * 185.56191 * 11 9 8 29 29 H 1.08999 * 109.47132 * 60.00050 * 1 2 3 30 30 H 1.08999 * 109.46837 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47296 * 299.99747 * 1 2 3 32 32 H 1.08998 * 109.46795 * 59.99753 * 3 2 1 33 33 H 1.09002 * 109.46970 * 300.00077 * 3 2 1 34 34 H 1.07994 * 126.83290 * 180.02562 * 7 6 5 35 35 H 1.09008 * 109.58550 * 246.15547 * 12 11 9 36 36 H 1.08997 * 109.59091 * 6.57786 * 12 11 9 37 37 H 1.08998 * 109.49603 * 174.58353 * 13 12 11 38 38 H 1.08999 * 109.49601 * 294.68592 * 13 12 11 39 39 H 0.97002 * 119.99785 * 265.00569 * 16 14 13 40 40 H 0.97002 * 119.99852 * 180.02562 * 20 19 17 41 41 H 1.08999 * 109.47271 * 60.00778 * 27 25 14 42 42 H 1.09006 * 109.47028 * 180.02562 * 27 25 14 43 43 H 1.09000 * 109.47442 * 300.00156 * 27 25 14 44 44 H 1.09005 * 109.58590 * 353.41888 * 28 11 9 45 45 H 1.09003 * 109.58826 * 113.84385 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2994 1.1298 1.0328 6 8 5.4612 1.0413 0.7193 7 6 5.6485 1.0232 -0.6023 8 6 4.4013 1.1161 -1.1706 9 6 4.0424 1.1396 -2.6000 10 8 3.1098 1.8203 -2.9816 11 7 4.7479 0.4066 -3.4841 12 6 5.7935 -0.5177 -3.0247 13 6 5.5142 -1.9068 -3.6070 14 6 5.3921 -1.8024 -5.1290 15 1 5.2178 -2.7934 -5.5482 16 7 6.6315 -1.2502 -5.6814 17 6 7.6878 -2.0776 -5.9544 18 1 7.6071 -3.1374 -5.7628 19 6 8.8620 -1.5545 -6.4783 20 7 8.9601 -0.2630 -6.7122 21 14 10.3028 -2.6833 -6.8513 22 1 9.9407 -4.0803 -6.5008 23 1 10.6318 -2.6047 -8.2972 24 1 11.4813 -2.2625 -6.0517 25 6 4.2209 -0.8844 -5.4867 26 1 3.3023 -1.2816 -5.0550 27 6 4.0792 -0.8067 -7.0081 28 6 4.4817 0.5122 -4.9252 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 6.5926 0.9500 -1.1214 35 1 6.7673 -0.1670 -3.3668 36 1 5.7832 -0.5691 -1.9360 37 1 6.3337 -2.5791 -3.3531 38 1 4.5834 -2.2944 -3.1931 39 1 6.7039 -0.2983 -5.8537 40 1 9.7805 0.1026 -7.0786 41 1 3.8937 -1.8039 -7.4071 42 1 3.2452 -0.1524 -7.2624 43 1 4.9977 -0.4080 -7.4387 44 1 3.6061 1.1402 -5.0900 45 1 5.3463 0.9486 -5.4255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036253789.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:55 Heat of formation + Delta-G solvation = -16.717164 kcal Electronic energy + Delta-G solvation = -28620.080106 eV Core-core repulsion = 24641.127602 eV Total energy + Delta-G solvation = -3978.952504 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.10858 -41.34746 -39.23243 -38.88580 -35.97383 -35.21277 -34.55747 -33.17741 -32.83084 -30.92619 -29.46823 -27.93442 -26.96149 -26.69859 -25.47896 -24.67945 -23.15779 -22.34989 -21.38590 -19.95271 -19.26567 -18.97621 -18.57651 -18.05518 -17.36857 -17.30295 -16.80330 -16.61088 -16.23848 -16.13600 -15.84723 -15.57810 -15.05595 -14.88761 -14.79149 -14.34638 -14.12704 -13.62279 -13.60571 -13.40674 -13.04792 -12.95469 -12.86548 -12.72505 -12.58282 -12.52674 -12.39175 -12.03628 -11.96676 -11.92314 -11.56547 -11.35752 -11.27161 -11.13927 -10.91299 -10.80748 -10.66054 -9.66618 -8.89264 -7.85668 -5.11326 0.04091 0.47585 1.51511 1.54381 1.57534 1.61613 1.86037 2.14846 2.56603 2.62734 3.04808 3.28675 3.48283 3.53466 3.79111 3.86192 3.89208 4.01261 4.08356 4.10705 4.23222 4.31884 4.38930 4.46348 4.48532 4.50487 4.55629 4.62714 4.63745 4.71972 4.79993 4.84690 4.95557 5.02866 5.15749 5.21159 5.29373 5.31062 5.48903 5.60916 5.65087 5.98696 6.30297 6.36507 6.94491 7.03356 7.44876 8.19568 8.44440 9.37419 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016787 B = 0.003569 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.515754 B = 7843.030647 C = 8673.424336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.140 3.860 4 C 0.049 3.951 5 N -0.352 5.352 6 O 0.112 5.888 7 C 0.020 3.980 8 C -0.257 4.257 9 C 0.596 3.404 10 O -0.569 6.569 11 N -0.589 5.589 12 C 0.109 3.891 13 C -0.143 4.143 14 C 0.174 3.826 15 H 0.046 0.954 16 N -0.722 5.722 17 C -0.224 4.224 18 H 0.074 0.926 19 C -0.069 4.069 20 N -0.966 5.966 21 Si 0.959 3.041 22 H -0.269 1.269 23 H -0.303 1.303 24 H -0.297 1.297 25 C -0.100 4.100 26 H 0.081 0.919 27 C -0.131 4.131 28 C 0.126 3.874 29 H 0.049 0.951 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.264 0.736 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.375 0.625 40 H 0.247 0.753 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.043 0.957 44 H 0.086 0.914 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.997 1.420 12.756 18.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.329 6.329 3 C 0.063 3.937 4 C -0.113 4.113 5 N -0.058 5.058 6 O 0.049 5.951 7 C -0.061 4.061 8 C -0.265 4.265 9 C 0.385 3.615 10 O -0.450 6.450 11 N -0.320 5.320 12 C -0.013 4.013 13 C -0.184 4.184 14 C 0.065 3.935 15 H 0.064 0.936 16 N -0.364 5.364 17 C -0.356 4.356 18 H 0.092 0.908 19 C -0.261 4.261 20 N -0.617 5.617 21 Si 0.790 3.210 22 H -0.194 1.194 23 H -0.231 1.231 24 H -0.225 1.225 25 C -0.119 4.119 26 H 0.099 0.901 27 C -0.189 4.189 28 C 0.004 3.996 29 H 0.068 0.932 30 H 0.120 0.880 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.279 0.721 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.209 0.791 40 H 0.056 0.944 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.488 1.438 13.847 19.384 hybrid contribution 0.974 0.055 -1.486 1.778 sum -12.514 1.492 12.361 17.653 Atomic orbital electron populations 1.22996 0.78197 1.04340 1.01346 1.87875 1.22460 1.26848 1.95736 1.20624 0.83790 0.86009 1.03247 1.24573 0.98062 1.01855 0.86844 1.73639 0.90019 1.18374 1.23722 1.84580 1.20912 1.65948 1.23696 1.27152 1.00837 0.95341 0.82786 1.22162 0.94157 1.15352 0.94781 1.17027 0.81476 0.79252 0.83760 1.90726 1.30204 1.44112 1.79940 1.47946 1.36597 1.40705 1.06708 1.21996 0.90225 0.89278 0.99763 1.22393 1.01568 0.96158 0.98255 1.20405 0.85726 0.95586 0.91802 0.93581 1.42557 1.10901 1.07261 1.75641 1.19566 0.92132 0.91395 1.32519 0.90832 1.25304 1.00501 0.96849 1.03466 1.69787 1.27355 1.11935 1.52635 0.85275 0.80279 0.78902 0.76496 1.19366 1.23065 1.22510 1.21550 0.98555 0.94954 0.96879 0.90096 1.21595 1.01342 1.02001 0.93940 1.21493 1.01610 0.97897 0.78612 0.93206 0.88032 0.92054 0.89344 0.90112 0.72089 0.90859 0.88416 0.90979 0.91570 0.79078 0.94384 0.92306 0.91662 0.93829 0.89524 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.41 -10.32 10.69 -148.98 -1.59 -11.91 16 3 C 0.14 3.36 6.54 71.23 0.47 3.82 16 4 C 0.05 1.31 7.22 45.15 0.33 1.63 16 5 N -0.35 -9.08 12.01 -44.78 -0.54 -9.62 16 6 O 0.11 2.45 11.06 77.05 0.85 3.30 16 7 C 0.02 0.40 9.98 67.62 0.67 1.08 16 8 C -0.26 -6.78 5.67 -18.74 -0.11 -6.88 16 9 C 0.60 18.48 7.66 86.65 0.66 19.15 16 10 O -0.57 -20.57 15.73 -4.06 -0.06 -20.64 16 11 N -0.59 -17.57 2.98 -823.63 -2.45 -20.02 16 12 C 0.11 3.03 5.24 86.36 0.45 3.48 16 13 C -0.14 -4.28 5.78 30.67 0.18 -4.10 16 14 C 0.17 6.00 2.53 45.02 0.11 6.12 16 15 H 0.05 1.66 8.08 -2.38 -0.02 1.64 16 16 N -0.72 -31.41 3.64 -322.80 -1.18 -32.59 16 17 C -0.22 -11.13 9.93 84.04 0.83 -10.29 16 18 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 19 C -0.07 -3.64 5.50 84.86 0.47 -3.17 16 20 N -0.97 -54.92 13.06 21.65 0.28 -54.64 16 21 Si 0.96 43.64 29.55 68.60 2.03 45.67 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 23 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 24 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 25 C -0.10 -3.03 2.66 -10.86 -0.03 -3.05 16 26 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 27 C -0.13 -3.93 9.05 71.98 0.65 -3.28 16 28 C 0.13 3.98 5.40 86.22 0.47 4.45 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.08 2.02 7.33 -2.39 -0.02 2.01 16 34 H 0.26 3.41 7.09 -2.91 -0.02 3.39 16 35 H 0.07 2.33 7.74 -2.38 -0.02 2.31 16 36 H 0.10 2.19 4.57 -2.39 -0.01 2.17 16 37 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.38 17.74 5.94 -92.71 -0.55 17.19 16 40 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 43 H 0.04 1.56 7.54 -2.39 -0.02 1.54 16 44 H 0.09 2.74 7.00 -2.38 -0.02 2.73 16 45 H 0.06 2.17 6.64 -2.39 -0.02 2.15 16 Total: -1.00 -65.34 365.55 4.21 -61.13 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 0.46 Total: 28.69 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 6.41 Total: 10.63 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -3.88 Total: -116.87 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.80 Total: -29.25 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -65.34 4.21 -61.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036253789.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.410 kcal (2) G-P(sol) polarization free energy of solvation -65.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds