Wall clock time and date at job start Tue Mar 31 2020 14:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99435 * 2 1 4 4 C 1.50702 * 109.46706 * 180.02562 * 3 2 1 5 5 N 1.30012 * 127.33116 * 269.95581 * 4 3 2 6 6 O 1.20658 * 112.30220 * 180.02562 * 5 4 3 7 7 C 1.33500 * 113.15413 * 359.71305 * 6 5 4 8 8 C 1.37354 * 106.34062 * 0.45388 * 7 6 5 9 9 C 1.47396 * 128.56858 * 179.84950 * 8 7 6 10 10 O 1.21605 * 120.00678 * 228.03698 * 9 8 7 11 11 N 1.34781 * 119.99525 * 47.76383 * 9 8 7 12 12 C 1.46924 * 120.63071 * 355.97613 * 11 9 8 13 13 C 1.53196 * 108.77413 * 126.37382 * 12 11 9 14 14 C 1.53041 * 109.31365 * 54.63639 * 13 12 11 15 15 H 1.08999 * 109.45750 * 58.64069 * 14 13 12 16 16 N 1.46496 * 109.46147 * 178.61760 * 14 13 12 17 17 C 1.36936 * 119.99808 * 275.00407 * 16 14 13 18 18 H 1.07997 * 120.00140 * 359.97438 * 17 16 14 19 19 C 1.38816 * 120.00009 * 179.97438 * 17 16 14 20 20 N 1.31615 * 119.99753 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00084 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46915 * 60.00073 * 21 19 17 23 23 H 1.48494 * 109.47171 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47183 * 300.00211 * 21 19 17 25 25 C 1.53039 * 109.53606 * 298.63691 * 14 13 12 26 26 H 1.08998 * 109.50106 * 301.40970 * 25 14 13 27 27 C 1.52996 * 109.49656 * 181.31622 * 25 14 13 28 28 C 1.46928 * 120.63140 * 175.70723 * 11 9 8 29 29 H 1.09001 * 109.47183 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47568 * 299.99795 * 1 2 3 31 31 H 1.09000 * 109.47774 * 60.00343 * 1 2 3 32 32 H 1.09003 * 109.47421 * 60.00395 * 3 2 1 33 33 H 1.08996 * 109.47253 * 299.99783 * 3 2 1 34 34 H 1.07995 * 126.83059 * 180.32851 * 7 6 5 35 35 H 1.08998 * 109.59260 * 246.16272 * 12 11 9 36 36 H 1.08997 * 109.58836 * 6.44866 * 12 11 9 37 37 H 1.08991 * 109.49811 * 174.59141 * 13 12 11 38 38 H 1.09007 * 109.49384 * 294.65427 * 13 12 11 39 39 H 0.96999 * 120.00019 * 94.99628 * 16 14 13 40 40 H 0.97000 * 119.99741 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.47540 * 59.99990 * 27 25 14 42 42 H 1.09002 * 109.47224 * 180.02562 * 27 25 14 43 43 H 1.09006 * 109.47202 * 299.99603 * 27 25 14 44 44 H 1.09000 * 109.58386 * 353.41159 * 28 11 9 45 45 H 1.08994 * 109.58794 * 113.83856 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1866 -0.0006 5 7 4.2989 1.1249 1.0328 6 8 5.4604 1.0333 0.7194 7 6 5.6474 1.0119 -0.6022 8 6 4.4014 1.1160 -1.1706 9 6 4.0427 1.1438 -2.6000 10 8 3.2801 1.9932 -3.0192 11 7 4.5644 0.2311 -3.4434 12 6 5.5586 -0.7422 -2.9715 13 6 5.0766 -2.1519 -3.3284 14 6 4.7901 -2.2239 -4.8300 15 1 5.6949 -1.9748 -5.3845 16 7 4.3604 -3.5798 -5.1805 17 6 5.2933 -4.5467 -5.4452 18 1 6.3458 -4.3095 -5.3959 19 6 4.8862 -5.8317 -5.7767 20 7 3.6036 -6.1206 -5.8372 21 14 6.1587 -7.1505 -6.1385 22 1 7.0232 -7.3443 -4.9467 23 1 5.4711 -8.4256 -6.4646 24 1 6.9935 -6.7296 -7.2924 25 6 3.6831 -1.2297 -5.1880 26 1 2.7855 -1.4629 -4.6153 27 6 3.3747 -1.3257 -6.6835 28 6 4.1452 0.1868 -4.8510 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 6.5910 0.9311 -1.1213 35 1 6.5163 -0.5502 -3.4552 36 1 5.6711 -0.6550 -1.8908 37 1 5.8486 -2.8766 -3.0701 38 1 4.1661 -2.3766 -2.7726 39 1 3.4152 -3.7928 -5.2249 40 1 3.3191 -7.0186 -6.0686 41 1 3.0457 -2.3370 -6.9225 42 1 2.5865 -0.6171 -6.9382 43 1 4.2724 -1.0909 -7.2555 44 1 3.3235 0.8852 -5.0096 45 1 4.9853 0.4562 -5.4910 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036253792.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:59 Heat of formation + Delta-G solvation = 0.718114 kcal Electronic energy + Delta-G solvation = -28354.094434 eV Core-core repulsion = 24375.897980 eV Total energy + Delta-G solvation = -3978.196454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.18748 -40.14626 -38.17522 -37.66881 -34.78117 -34.23550 -33.11847 -32.03266 -31.50698 -29.38991 -28.60288 -26.83524 -25.93675 -25.43904 -24.04899 -22.72983 -21.76707 -21.45306 -20.30705 -19.37118 -18.08422 -17.76897 -17.13456 -17.05366 -16.50950 -16.25786 -15.90224 -15.29842 -15.11325 -14.95376 -14.30428 -14.09815 -13.81929 -13.71213 -13.35037 -12.99121 -12.77635 -12.62061 -12.48321 -12.34510 -11.86407 -11.78401 -11.67124 -11.60602 -11.22685 -10.95436 -10.84365 -10.69150 -10.45352 -10.41487 -10.25486 -10.21089 -9.95657 -9.84644 -9.71148 -9.65987 -8.92559 -8.60330 -6.99406 -5.79733 -3.08693 0.97293 1.44978 2.46434 2.77413 3.09872 3.41073 3.43729 3.45888 3.47026 3.95222 4.15284 4.47797 4.55347 4.71342 4.91003 4.94589 5.03026 5.14265 5.18614 5.19452 5.21391 5.29467 5.34018 5.47141 5.48629 5.51335 5.53570 5.64479 5.72633 5.88423 6.02966 6.09443 6.26779 6.31491 6.39710 6.45753 6.58175 6.76667 6.81094 6.87892 7.01869 7.33110 7.65432 7.91094 8.02532 8.38326 9.49793 10.06964 10.41766 11.42648 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014008 B = 0.003333 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.318148 B = 8398.073728 C = 8411.144963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.383 6.383 3 C 0.139 3.861 4 C 0.059 3.941 5 N -0.337 5.337 6 O 0.107 5.893 7 C -0.016 4.016 8 C -0.225 4.225 9 C 0.596 3.404 10 O -0.536 6.536 11 N -0.594 5.594 12 C 0.097 3.903 13 C -0.152 4.152 14 C 0.185 3.815 15 H 0.049 0.951 16 N -0.720 5.720 17 C -0.240 4.240 18 H 0.069 0.931 19 C -0.011 4.011 20 N -0.932 5.932 21 Si 0.905 3.095 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.286 1.286 25 C -0.111 4.111 26 H 0.070 0.930 27 C -0.135 4.135 28 C 0.123 3.877 29 H 0.092 0.908 30 H 0.043 0.957 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.230 0.770 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.074 0.926 42 H 0.043 0.957 43 H 0.051 0.949 44 H 0.089 0.911 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.617 16.836 9.455 19.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C 0.062 3.938 4 C -0.103 4.103 5 N -0.041 5.041 6 O 0.042 5.958 7 C -0.097 4.097 8 C -0.232 4.232 9 C 0.383 3.617 10 O -0.414 6.414 11 N -0.325 5.325 12 C -0.026 4.026 13 C -0.193 4.193 14 C 0.074 3.926 15 H 0.067 0.933 16 N -0.360 5.360 17 C -0.372 4.372 18 H 0.087 0.913 19 C -0.207 4.207 20 N -0.580 5.580 21 Si 0.736 3.264 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.131 4.131 26 H 0.088 0.912 27 C -0.193 4.193 28 C 0.001 3.999 29 H 0.110 0.890 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.246 0.754 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.218 0.782 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.108 0.892 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.247 16.990 10.476 19.962 hybrid contribution 0.252 -0.855 -0.957 1.308 sum 0.499 16.135 9.519 18.740 Atomic orbital electron populations 1.22804 0.79857 1.03457 1.00222 1.87959 1.20485 1.26086 1.95524 1.20572 0.84362 0.86234 1.02681 1.24277 0.97279 1.02113 0.86666 1.73641 0.89539 1.17469 1.23468 1.84582 1.21528 1.66417 1.23246 1.26425 1.00320 0.99459 0.83545 1.22265 0.93173 1.12079 0.95729 1.16856 0.80365 0.81370 0.83121 1.90777 1.36461 1.36877 1.77317 1.48018 1.42047 1.31886 1.10567 1.22124 0.91016 0.89819 0.99645 1.22691 1.02084 0.93409 1.01119 1.20185 0.94757 0.86105 0.91539 0.93348 1.42392 1.06583 1.04655 1.82374 1.19163 0.88954 0.89751 1.39292 0.91279 1.24722 0.95892 0.97547 1.02543 1.69646 1.13053 1.20280 1.54985 0.86305 0.80499 0.81489 0.78088 1.21309 1.21744 1.21296 1.21680 0.99990 0.93793 0.97664 0.91169 1.21654 1.00600 1.02899 0.94163 1.21686 1.00646 0.98231 0.79360 0.88973 0.93847 0.93488 0.91026 0.89696 0.75355 0.90911 0.90452 0.90426 0.92020 0.78185 0.93448 0.90657 0.93789 0.92992 0.89217 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.25 10.69 -35.23 -0.38 -5.63 16 3 C 0.14 1.70 6.54 36.01 0.24 1.94 16 4 C 0.06 0.79 7.22 -79.77 -0.58 0.21 16 5 N -0.34 -4.40 12.01 34.78 0.42 -3.98 16 6 O 0.11 1.16 11.06 18.63 0.21 1.37 16 7 C -0.02 -0.15 10.03 30.41 0.30 0.16 16 8 C -0.23 -2.85 5.53 -102.90 -0.57 -3.42 16 9 C 0.60 8.64 7.66 -12.53 -0.10 8.54 16 10 O -0.54 -9.13 16.30 5.27 0.09 -9.04 16 11 N -0.59 -8.04 2.98 -174.31 -0.52 -8.56 16 12 C 0.10 1.18 5.97 -3.71 -0.02 1.16 16 13 C -0.15 -2.48 5.66 -26.61 -0.15 -2.63 16 14 C 0.18 3.36 2.19 -67.89 -0.15 3.22 16 15 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 16 N -0.72 -16.94 4.41 -53.39 -0.24 -17.17 16 17 C -0.24 -6.33 9.93 -15.06 -0.15 -6.47 16 18 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -27.39 13.06 55.49 0.72 -26.66 16 21 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 C -0.11 -1.77 2.44 -90.72 -0.22 -1.99 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 27 C -0.14 -2.12 9.03 37.16 0.34 -1.78 16 28 C 0.12 1.69 5.68 -3.93 -0.02 1.67 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.04 7.90 -51.93 -0.41 0.63 16 34 H 0.23 1.10 7.56 -52.49 -0.40 0.71 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.82 4.48 -51.93 -0.23 0.59 16 37 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 39 H 0.38 9.83 7.51 -40.82 -0.31 9.52 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.07 1.40 7.36 -51.93 -0.38 1.02 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.09 1.28 7.03 -51.93 -0.37 0.91 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 371.36 15.07 5.60 5.60 Total: -1.00 -32.76 371.36 -5.90 -38.65 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -6.71 Total: 7.06 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -0.06 Total: 1.64 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.39 Total: -56.37 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.08 Total: -13.30 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.76 -5.90 -38.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036253792.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.370 kcal (2) G-P(sol) polarization free energy of solvation -32.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds