Wall clock time and date at job start Tue Mar 31 2020 14:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99435 * 2 1 4 4 C 1.50702 * 109.46706 * 180.02562 * 3 2 1 5 5 N 1.30012 * 127.33116 * 269.95581 * 4 3 2 6 6 O 1.20658 * 112.30220 * 180.02562 * 5 4 3 7 7 C 1.33500 * 113.15413 * 359.71305 * 6 5 4 8 8 C 1.37354 * 106.34062 * 0.45388 * 7 6 5 9 9 C 1.47396 * 128.56858 * 179.84950 * 8 7 6 10 10 O 1.21605 * 120.00678 * 228.03698 * 9 8 7 11 11 N 1.34781 * 119.99525 * 47.76383 * 9 8 7 12 12 C 1.46924 * 120.63071 * 355.97613 * 11 9 8 13 13 C 1.53196 * 108.77413 * 126.37382 * 12 11 9 14 14 C 1.53041 * 109.31365 * 54.63639 * 13 12 11 15 15 H 1.08999 * 109.45750 * 58.64069 * 14 13 12 16 16 N 1.46496 * 109.46147 * 178.61760 * 14 13 12 17 17 C 1.36936 * 119.99808 * 275.00407 * 16 14 13 18 18 H 1.07997 * 120.00140 * 359.97438 * 17 16 14 19 19 C 1.38816 * 120.00009 * 179.97438 * 17 16 14 20 20 N 1.31615 * 119.99753 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00084 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46915 * 60.00073 * 21 19 17 23 23 H 1.48494 * 109.47171 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47183 * 300.00211 * 21 19 17 25 25 C 1.53039 * 109.53606 * 298.63691 * 14 13 12 26 26 H 1.08998 * 109.50106 * 301.40970 * 25 14 13 27 27 C 1.52996 * 109.49656 * 181.31622 * 25 14 13 28 28 C 1.46928 * 120.63140 * 175.70723 * 11 9 8 29 29 H 1.09001 * 109.47183 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47568 * 299.99795 * 1 2 3 31 31 H 1.09000 * 109.47774 * 60.00343 * 1 2 3 32 32 H 1.09003 * 109.47421 * 60.00395 * 3 2 1 33 33 H 1.08996 * 109.47253 * 299.99783 * 3 2 1 34 34 H 1.07995 * 126.83059 * 180.32851 * 7 6 5 35 35 H 1.08998 * 109.59260 * 246.16272 * 12 11 9 36 36 H 1.08997 * 109.58836 * 6.44866 * 12 11 9 37 37 H 1.08991 * 109.49811 * 174.59141 * 13 12 11 38 38 H 1.09007 * 109.49384 * 294.65427 * 13 12 11 39 39 H 0.96999 * 120.00019 * 94.99628 * 16 14 13 40 40 H 0.97000 * 119.99741 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.47540 * 59.99990 * 27 25 14 42 42 H 1.09002 * 109.47224 * 180.02562 * 27 25 14 43 43 H 1.09006 * 109.47202 * 299.99603 * 27 25 14 44 44 H 1.09000 * 109.58386 * 353.41159 * 28 11 9 45 45 H 1.08994 * 109.58794 * 113.83856 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1866 -0.0006 5 7 4.2989 1.1249 1.0328 6 8 5.4604 1.0333 0.7194 7 6 5.6474 1.0119 -0.6022 8 6 4.4014 1.1160 -1.1706 9 6 4.0427 1.1438 -2.6000 10 8 3.2801 1.9932 -3.0192 11 7 4.5644 0.2311 -3.4434 12 6 5.5586 -0.7422 -2.9715 13 6 5.0766 -2.1519 -3.3284 14 6 4.7901 -2.2239 -4.8300 15 1 5.6949 -1.9748 -5.3845 16 7 4.3604 -3.5798 -5.1805 17 6 5.2933 -4.5467 -5.4452 18 1 6.3458 -4.3095 -5.3959 19 6 4.8862 -5.8317 -5.7767 20 7 3.6036 -6.1206 -5.8372 21 14 6.1587 -7.1505 -6.1385 22 1 7.0232 -7.3443 -4.9467 23 1 5.4711 -8.4256 -6.4646 24 1 6.9935 -6.7296 -7.2924 25 6 3.6831 -1.2297 -5.1880 26 1 2.7855 -1.4629 -4.6153 27 6 3.3747 -1.3257 -6.6835 28 6 4.1452 0.1868 -4.8510 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 6.5910 0.9311 -1.1213 35 1 6.5163 -0.5502 -3.4552 36 1 5.6711 -0.6550 -1.8908 37 1 5.8486 -2.8766 -3.0701 38 1 4.1661 -2.3766 -2.7726 39 1 3.4152 -3.7928 -5.2249 40 1 3.3191 -7.0186 -6.0686 41 1 3.0457 -2.3370 -6.9225 42 1 2.5865 -0.6171 -6.9382 43 1 4.2724 -1.0909 -7.2555 44 1 3.3235 0.8852 -5.0096 45 1 4.9853 0.4562 -5.4910 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036253792.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:58 Heat of formation + Delta-G solvation = -21.879881 kcal Electronic energy + Delta-G solvation = -28355.074357 eV Core-core repulsion = 24375.897980 eV Total energy + Delta-G solvation = -3979.176376 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.09861 -41.29581 -39.18913 -38.90021 -36.23764 -35.23959 -34.53276 -33.24366 -32.85335 -31.04803 -29.49795 -27.96124 -26.96941 -26.76247 -25.42998 -24.06500 -23.13122 -22.36394 -21.49407 -20.62227 -19.10992 -18.96056 -18.68024 -18.10220 -17.41562 -17.33675 -16.83976 -16.75405 -16.24098 -16.19446 -15.68362 -15.47621 -15.23875 -14.88971 -14.80257 -14.24816 -13.94602 -13.66896 -13.64310 -13.45043 -13.15156 -12.97399 -12.80994 -12.76109 -12.61879 -12.56704 -12.43941 -12.18712 -12.06019 -11.83170 -11.65946 -11.38104 -11.26438 -11.14287 -10.90748 -10.86778 -10.63831 -9.74977 -8.94586 -7.88826 -5.16452 0.15426 0.50145 1.42587 1.50570 1.52570 1.58362 1.87504 2.17845 2.56842 2.60279 3.05710 3.27907 3.44490 3.52622 3.78916 3.83308 3.85716 3.98302 4.05857 4.09112 4.21774 4.28674 4.39284 4.40099 4.44411 4.49263 4.56345 4.59489 4.66715 4.75864 4.78088 4.79869 4.83084 4.97184 5.02647 5.19164 5.31352 5.41004 5.50710 5.57702 5.63393 5.94970 6.24714 6.32390 6.93082 7.07486 7.38838 8.15341 8.38019 9.34764 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014008 B = 0.003333 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.318148 B = 8398.073728 C = 8411.144963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.413 6.413 3 C 0.138 3.862 4 C 0.039 3.961 5 N -0.354 5.354 6 O 0.115 5.885 7 C 0.021 3.979 8 C -0.259 4.259 9 C 0.599 3.401 10 O -0.568 6.568 11 N -0.593 5.593 12 C 0.105 3.895 13 C -0.144 4.144 14 C 0.180 3.820 15 H 0.057 0.943 16 N -0.733 5.733 17 C -0.231 4.231 18 H 0.081 0.919 19 C -0.077 4.077 20 N -0.972 5.972 21 Si 0.967 3.033 22 H -0.278 1.278 23 H -0.303 1.303 24 H -0.277 1.277 25 C -0.101 4.101 26 H 0.046 0.954 27 C -0.129 4.129 28 C 0.130 3.870 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.280 0.720 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.033 0.967 39 H 0.369 0.631 40 H 0.248 0.752 41 H 0.038 0.962 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.085 0.915 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.242 18.331 9.979 21.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C 0.061 3.939 4 C -0.123 4.123 5 N -0.058 5.058 6 O 0.050 5.950 7 C -0.060 4.060 8 C -0.266 4.266 9 C 0.387 3.613 10 O -0.449 6.449 11 N -0.324 5.324 12 C -0.017 4.017 13 C -0.185 4.185 14 C 0.071 3.929 15 H 0.075 0.925 16 N -0.371 5.371 17 C -0.363 4.363 18 H 0.099 0.901 19 C -0.268 4.268 20 N -0.624 5.624 21 Si 0.797 3.203 22 H -0.204 1.204 23 H -0.229 1.229 24 H -0.203 1.203 25 C -0.122 4.122 26 H 0.064 0.936 27 C -0.187 4.187 28 C 0.007 3.993 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.295 0.705 35 H 0.127 0.873 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.200 0.800 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.104 0.896 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.908 18.528 11.028 21.757 hybrid contribution -0.563 -1.255 -1.095 1.759 sum 2.345 17.273 9.933 20.063 Atomic orbital electron populations 1.22984 0.78274 1.04154 1.01467 1.87905 1.22423 1.27140 1.95728 1.20626 0.84314 0.85818 1.03162 1.24548 0.97917 1.02626 0.87232 1.73640 0.90191 1.18232 1.23750 1.84564 1.20646 1.65710 1.24085 1.27248 1.00767 0.95500 0.82514 1.22174 0.94622 1.15171 0.94676 1.17041 0.79620 0.80914 0.83758 1.90756 1.37813 1.38289 1.78005 1.48053 1.42166 1.31823 1.10351 1.22194 0.91634 0.86484 1.01412 1.22481 1.00736 0.96358 0.98894 1.20446 0.95593 0.84008 0.92838 0.92516 1.42608 1.05485 1.06443 1.82601 1.19593 0.89851 0.90150 1.36664 0.90118 1.25485 0.97465 0.99893 1.04003 1.69819 1.15018 1.20093 1.57438 0.85295 0.78285 0.78466 0.78225 1.20433 1.22946 1.20348 1.21543 0.98289 0.94844 0.97482 0.93560 1.21567 1.01752 1.01254 0.94111 1.21597 1.01537 0.95988 0.80144 0.88609 0.91713 0.93119 0.89306 0.90363 0.70507 0.87313 0.88340 0.91147 0.94769 0.79967 0.94370 0.94242 0.91733 0.91836 0.89644 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.77 16 2 O -0.41 -11.46 10.69 -148.98 -1.59 -13.05 16 3 C 0.14 3.38 6.54 71.24 0.47 3.84 16 4 C 0.04 1.00 7.22 45.16 0.33 1.32 16 5 N -0.35 -8.69 12.01 -44.78 -0.54 -9.22 16 6 O 0.11 2.16 11.06 76.92 0.85 3.01 16 7 C 0.02 0.30 10.03 67.61 0.68 0.98 16 8 C -0.26 -6.00 5.53 -18.75 -0.10 -6.11 16 9 C 0.60 16.30 7.66 86.65 0.66 16.96 16 10 O -0.57 -18.94 16.30 -4.05 -0.07 -19.00 16 11 N -0.59 -14.57 2.98 -823.64 -2.45 -17.02 16 12 C 0.10 2.18 5.97 86.36 0.52 2.69 16 13 C -0.14 -4.48 5.66 30.67 0.17 -4.30 16 14 C 0.18 6.36 2.19 45.02 0.10 6.46 16 15 H 0.06 1.94 8.08 -2.39 -0.02 1.93 16 16 N -0.73 -34.87 4.41 -322.82 -1.42 -36.29 16 17 C -0.23 -12.08 9.93 84.03 0.83 -11.24 16 18 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 19 C -0.08 -4.26 5.50 84.86 0.47 -3.80 16 20 N -0.97 -58.84 13.06 21.65 0.28 -58.55 16 21 Si 0.97 44.90 29.55 68.60 2.03 46.93 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 24 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 25 C -0.10 -3.18 2.44 -10.86 -0.03 -3.20 16 26 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 27 C -0.13 -3.98 9.03 71.98 0.65 -3.33 16 28 C 0.13 3.29 5.68 86.22 0.49 3.78 16 29 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.08 1.96 7.90 -2.39 -0.02 1.94 16 34 H 0.28 0.92 7.56 -2.91 -0.02 0.89 16 35 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.10 1.66 4.48 -2.39 -0.01 1.65 16 37 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.37 19.62 7.51 -92.71 -0.70 18.93 16 40 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 41 H 0.04 1.50 7.36 -2.39 -0.02 1.48 16 42 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 44 H 0.09 2.31 7.03 -2.39 -0.02 2.29 16 45 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -73.84 371.36 3.88 -69.96 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.31 Total: 27.41 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: 6.48 Total: 5.84 kcal Atomic # 7 Polarization: -116.96 SS G_CDS: -4.13 Total: -121.09 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.81 Total: -29.05 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -73.84 3.88 -69.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036253792.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.082 kcal (2) G-P(sol) polarization free energy of solvation -73.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds