Wall clock time and date at job start Tue Mar 31 2020 13:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53011 * 109.46802 * 2 1 4 4 H 1.08997 * 109.49744 * 304.93323 * 3 2 1 5 5 C 1.53186 * 109.49699 * 65.00174 * 3 2 1 6 6 N 1.46930 * 108.77492 * 174.58431 * 5 3 2 7 7 C 1.34773 * 120.62894 * 126.41302 * 6 5 3 8 8 O 1.21575 * 120.00207 * 353.03394 * 7 6 5 9 9 C 1.47544 * 119.99684 * 173.03972 * 7 6 5 10 10 C 1.36660 * 126.87700 * 172.77310 * 9 7 6 11 11 C 1.41858 * 103.81193 * 179.97438 * 10 9 7 12 12 O 1.35729 * 126.78973 * 180.11850 * 11 10 9 13 13 C 1.42897 * 117.00350 * 180.23450 * 12 11 10 14 14 N 1.30544 * 106.42388 * 0.33542 * 11 10 9 15 15 O 1.20872 * 111.88709 * 359.78194 * 14 11 10 16 16 C 1.46924 * 118.73614 * 306.39141 * 6 5 3 17 17 C 1.53195 * 108.77718 * 53.60938 * 16 6 5 18 18 C 1.53038 * 109.30931 * 305.36262 * 17 16 6 19 19 H 1.09006 * 109.46080 * 181.38743 * 18 17 16 20 20 N 1.46504 * 109.46171 * 301.34566 * 18 17 16 21 21 C 1.36940 * 119.99732 * 275.07183 * 20 18 17 22 22 H 1.08001 * 120.00471 * 359.97438 * 21 20 18 23 23 C 1.38818 * 120.00010 * 180.02562 * 21 20 18 24 24 N 1.31615 * 119.99879 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99604 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47473 * 90.00324 * 25 23 21 27 27 H 1.48504 * 109.47047 * 210.00091 * 25 23 21 28 28 H 1.48503 * 109.47450 * 329.99827 * 25 23 21 29 29 H 1.09003 * 109.47046 * 299.99721 * 1 2 3 30 30 H 1.09002 * 109.46845 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47112 * 59.99564 * 1 2 3 32 32 H 1.09003 * 109.47419 * 119.99605 * 2 1 3 33 33 H 1.09001 * 109.47467 * 239.99964 * 2 1 3 34 34 H 1.08999 * 109.58606 * 294.37148 * 5 3 2 35 35 H 1.09003 * 109.58808 * 54.65862 * 5 3 2 36 36 H 1.08001 * 128.09615 * 0.02562 * 10 9 7 37 37 H 1.08996 * 109.47426 * 180.02562 * 13 12 11 38 38 H 1.09000 * 109.47245 * 300.00513 * 13 12 11 39 39 H 1.09000 * 109.46700 * 59.99701 * 13 12 11 40 40 H 1.08999 * 109.58695 * 173.39725 * 16 6 5 41 41 H 1.08999 * 109.58915 * 293.81829 * 16 6 5 42 42 H 1.08997 * 109.49592 * 65.31440 * 17 16 6 43 43 H 1.09001 * 109.49344 * 185.38175 * 17 16 6 44 44 H 0.96992 * 120.00241 * 95.06793 * 20 18 17 45 45 H 0.97006 * 119.99345 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6065 1.9817 -0.8423 5 6 1.6350 2.1281 1.3087 6 7 2.2414 3.4657 1.3493 7 6 1.4815 4.5579 1.5637 8 8 0.2704 4.4584 1.5995 9 6 2.1195 5.8745 1.7549 10 6 1.4914 7.0850 1.8437 11 6 2.5553 8.0062 2.0223 12 8 2.4499 9.3518 2.1660 13 6 3.6661 10.0841 2.3288 14 7 3.6561 7.3045 2.0164 15 8 3.4376 6.1248 1.8700 16 6 3.6921 3.5899 1.1522 17 6 4.0740 2.8881 -0.1549 18 6 3.5655 1.4450 -0.1217 19 1 3.8574 0.9359 -1.0403 20 7 4.1479 0.7486 1.0281 21 6 5.3861 0.1728 0.9245 22 1 5.9331 0.2318 -0.0049 23 6 5.9378 -0.4876 2.0138 24 7 7.1276 -1.0414 1.9141 25 14 4.9915 -0.5901 3.6211 26 1 4.1487 -1.8128 3.6222 27 1 5.9477 -0.6472 4.7558 28 1 4.1257 0.6080 3.7632 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 0.5496 2.2174 1.3538 35 1 1.9886 1.5385 2.1547 36 1 0.4327 7.2918 1.7912 37 1 3.4401 11.1453 2.4331 38 1 4.1844 9.7339 3.2215 39 1 4.3016 9.9316 1.4565 40 1 3.9640 4.6439 1.0940 41 1 4.2156 3.1209 1.9853 42 1 3.6218 3.4140 -0.9957 43 1 5.1584 2.8898 -0.2652 44 1 3.6566 0.6953 1.8627 45 1 7.5132 -1.5025 2.6754 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037822989.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:53 Heat of formation + Delta-G solvation = 20.324069 kcal Electronic energy + Delta-G solvation = -28628.886184 eV Core-core repulsion = 24651.539908 eV Total energy + Delta-G solvation = -3977.346276 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.19414 -40.29403 -39.14273 -38.14178 -34.83788 -33.92394 -33.42728 -32.08695 -31.79054 -29.92400 -28.89301 -27.96803 -25.94695 -24.15389 -23.55043 -23.40760 -22.85680 -20.98925 -20.77219 -18.99992 -18.23215 -18.02019 -17.73827 -17.18247 -16.39591 -16.04493 -15.86311 -15.37241 -15.09392 -14.68749 -14.46325 -14.24898 -13.93470 -13.80065 -13.48272 -13.36799 -13.16985 -12.60234 -12.53597 -12.48154 -12.21303 -11.90941 -11.74809 -11.62533 -11.32189 -11.09732 -11.00059 -10.84503 -10.52921 -10.41893 -10.27060 -10.16428 -10.07118 -9.87242 -9.59159 -9.56978 -8.98965 -8.56171 -7.31950 -5.81303 -3.17009 0.58191 1.87756 2.36371 2.39978 2.84708 3.15991 3.31839 3.34583 3.42284 3.84823 4.36052 4.54040 4.56895 4.75922 4.82477 4.93735 4.97522 5.02538 5.14259 5.16111 5.28084 5.37910 5.45602 5.48729 5.53101 5.56048 5.61400 5.71571 5.82899 5.97379 6.03299 6.11906 6.20016 6.27182 6.36812 6.42759 6.51327 6.61276 6.63512 6.71255 6.79994 7.24646 7.74284 7.94678 7.95883 8.37573 9.15469 9.87959 10.07190 11.37045 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013376 B = 0.003988 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.797142 B = 7019.480274 C = 8255.030405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.107 4.107 4 H 0.075 0.925 5 C 0.116 3.884 6 N -0.586 5.586 7 C 0.600 3.400 8 O -0.521 6.521 9 C -0.049 4.049 10 C -0.158 4.158 11 C 0.204 3.796 12 O -0.282 6.282 13 C 0.030 3.970 14 N -0.393 5.393 15 O 0.121 5.879 16 C 0.101 3.899 17 C -0.148 4.148 18 C 0.184 3.816 19 H 0.063 0.937 20 N -0.743 5.743 21 C -0.242 4.242 22 H 0.091 0.909 23 C 0.008 3.992 24 N -0.932 5.932 25 Si 0.877 3.123 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.278 1.278 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.189 0.811 37 H 0.106 0.894 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.084 0.916 44 H 0.360 0.640 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.426 15.994 -2.048 19.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.127 4.127 4 H 0.093 0.907 5 C -0.005 4.005 6 N -0.317 5.317 7 C 0.384 3.616 8 O -0.398 6.398 9 C -0.115 4.115 10 C -0.181 4.181 11 C 0.006 3.994 12 O -0.189 6.189 13 C -0.065 4.065 14 N -0.118 5.118 15 O 0.058 5.942 16 C -0.021 4.021 17 C -0.189 4.189 18 C 0.074 3.926 19 H 0.081 0.919 20 N -0.387 5.387 21 C -0.371 4.371 22 H 0.109 0.891 23 C -0.188 4.188 24 N -0.580 5.580 25 Si 0.708 3.292 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.205 1.205 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.206 0.794 37 H 0.125 0.875 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.072 0.928 43 H 0.102 0.898 44 H 0.194 0.806 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.787 16.325 -1.975 19.667 hybrid contribution -0.872 0.094 1.291 1.561 sum -11.660 16.420 -0.684 20.150 Atomic orbital electron populations 1.21868 0.96549 1.01275 1.01526 1.21436 0.94525 0.95473 1.03476 1.21826 0.97574 0.96361 0.96946 0.90659 1.21853 0.99242 0.80682 0.98738 1.48105 1.09420 1.06259 1.67871 1.16597 0.85880 0.80917 0.78187 1.90841 1.12273 1.84127 1.52564 1.24089 0.84008 0.97038 1.06352 1.22136 1.01302 0.88249 1.06382 1.21866 0.89934 0.86684 1.00888 1.86205 1.33221 1.11302 1.88142 1.23102 0.85094 0.95997 1.02258 1.74004 1.22816 0.91048 1.23942 1.85173 1.23572 1.18220 1.67276 1.22199 0.77884 1.01466 1.00570 1.22513 1.02673 0.98641 0.95109 1.20215 0.89310 0.90701 0.92397 0.91885 1.42841 1.19746 1.65853 1.10285 1.19047 0.92106 1.26720 0.99258 0.89103 1.24633 0.96434 1.00244 0.97489 1.69689 1.16316 1.41151 1.30831 0.86680 0.79483 0.77794 0.85252 1.21030 1.21774 1.20472 0.92844 0.92979 0.93026 0.91068 0.91321 0.88782 0.90820 0.79358 0.87539 0.92072 0.92044 0.89394 0.89377 0.92774 0.89772 0.80628 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.67 37.16 0.36 -1.44 16 2 C -0.11 -1.54 5.19 -26.73 -0.14 -1.68 16 3 C -0.11 -1.53 2.14 -90.50 -0.19 -1.72 16 4 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 5 C 0.12 1.70 5.03 -3.71 -0.02 1.68 16 6 N -0.59 -8.62 2.97 -174.00 -0.52 -9.14 16 7 C 0.60 8.83 7.68 -12.47 -0.10 8.74 16 8 O -0.52 -8.57 16.34 5.30 0.09 -8.48 16 9 C -0.05 -0.66 6.90 -36.36 -0.25 -0.91 16 10 C -0.16 -1.90 10.98 -38.77 -0.43 -2.32 16 11 C 0.20 2.53 8.00 -16.72 -0.13 2.40 16 12 O -0.28 -3.08 10.57 -18.89 -0.20 -3.28 16 13 C 0.03 0.23 10.73 101.05 1.08 1.32 16 14 N -0.39 -5.31 11.50 30.47 0.35 -4.96 16 15 O 0.12 1.66 7.91 15.51 0.12 1.78 16 16 C 0.10 1.51 5.89 -3.71 -0.02 1.49 16 17 C -0.15 -2.27 5.78 -26.61 -0.15 -2.43 16 18 C 0.18 3.09 2.53 -67.89 -0.17 2.92 16 19 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 20 N -0.74 -15.50 3.52 -53.38 -0.19 -15.69 16 21 C -0.24 -6.23 10.41 -15.06 -0.16 -6.38 16 22 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 23 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 24 N -0.93 -28.13 13.97 55.49 0.78 -27.35 16 25 Si 0.88 21.12 27.73 -169.99 -4.71 16.41 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.28 -6.26 6.52 56.52 0.37 -5.90 16 29 H 0.05 0.61 6.70 -51.93 -0.35 0.26 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 1.12 7.69 -51.93 -0.40 0.72 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.09 1.33 5.72 -51.93 -0.30 1.03 16 35 H 0.07 1.16 6.65 -51.93 -0.35 0.81 16 36 H 0.19 1.88 8.06 -52.49 -0.42 1.45 16 37 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.09 1.22 4.26 -52.63 -0.22 0.99 16 41 H 0.09 1.51 7.74 -51.93 -0.40 1.10 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 44 H 0.36 7.53 3.81 -40.82 -0.16 7.37 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 360.01 15.07 5.43 5.43 Total: -1.00 -30.38 360.01 -5.68 -36.06 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.41 Total: 7.44 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -0.41 Total: 1.79 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: 0.42 Total: -57.14 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.01 Total: -9.98 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.71 Total: 16.41 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.38 -5.68 -36.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037822989.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.381 kcal (2) G-P(sol) polarization free energy of solvation -30.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds