Wall clock time and date at job start Tue Mar 31 2020 13:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46754 * 2 1 4 4 H 1.09003 * 109.49719 * 55.06848 * 3 2 1 5 5 C 1.53191 * 109.49890 * 295.00277 * 3 2 1 6 6 N 1.46929 * 108.77307 * 185.41802 * 5 3 2 7 7 C 1.34774 * 120.62799 * 233.62828 * 6 5 3 8 8 O 1.21496 * 119.99843 * 353.90652 * 7 6 5 9 9 C 1.48208 * 119.99937 * 173.90644 * 7 6 5 10 10 C 1.36317 * 126.38421 * 173.51253 * 9 7 6 11 11 C 1.42343 * 104.00784 * 179.97438 * 10 9 7 12 12 O 1.21974 * 127.14827 * 180.09118 * 11 10 9 13 13 N 1.34828 * 105.70135 * 0.33434 * 11 10 9 14 14 C 1.46498 * 124.56453 * 179.80493 * 13 11 10 15 15 O 1.20922 * 110.86725 * 359.78385 * 13 11 10 16 16 C 1.46926 * 118.74020 * 53.60550 * 6 5 3 17 17 C 1.53193 * 108.77752 * 306.39319 * 16 6 5 18 18 C 1.53034 * 109.31052 * 54.63501 * 17 16 6 19 19 H 1.09003 * 109.45429 * 178.61944 * 18 17 16 20 20 N 1.46494 * 109.46252 * 58.65845 * 18 17 16 21 21 C 1.36939 * 120.00066 * 84.93089 * 20 18 17 22 22 H 1.07997 * 119.99903 * 359.97438 * 21 20 18 23 23 C 1.38817 * 120.00021 * 180.02562 * 21 20 18 24 24 N 1.31616 * 119.99753 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99869 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47115 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47100 * 119.99982 * 25 23 21 28 28 H 1.48496 * 109.46818 * 239.99439 * 25 23 21 29 29 H 1.08999 * 109.46829 * 299.99530 * 1 2 3 30 30 H 1.09007 * 109.47161 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47482 * 59.99995 * 1 2 3 32 32 H 1.08997 * 109.46880 * 120.00384 * 2 1 3 33 33 H 1.08999 * 109.46829 * 240.00470 * 2 1 3 34 34 H 1.09008 * 109.58503 * 305.19476 * 5 3 2 35 35 H 1.08996 * 109.59010 * 65.48204 * 5 3 2 36 36 H 1.08003 * 127.99719 * 0.02562 * 10 9 7 37 37 H 1.09008 * 109.47040 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.47354 * 300.00198 * 14 13 11 39 39 H 1.09007 * 109.47515 * 60.00425 * 14 13 11 40 40 H 1.09002 * 109.58784 * 66.17930 * 16 6 5 41 41 H 1.09005 * 109.58535 * 186.60489 * 16 6 5 42 42 H 1.08996 * 109.49318 * 174.58772 * 17 16 6 43 43 H 1.09006 * 109.49510 * 294.68418 * 17 16 6 44 44 H 0.97002 * 120.00310 * 264.93235 * 20 18 17 45 45 H 0.97001 * 119.99943 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9816 0.8424 5 6 1.6349 2.1280 -1.3087 6 7 2.2414 3.4657 -1.3493 7 6 1.4814 4.5580 -1.5627 8 8 0.3034 4.4349 -1.8336 9 6 2.0826 5.9093 -1.4671 10 6 1.4733 7.0891 -1.7756 11 6 2.4698 8.0707 -1.5119 12 8 2.3674 9.2787 -1.6458 13 7 3.5523 7.3873 -1.0887 14 6 4.8259 8.0018 -0.7060 15 8 3.3301 6.1989 -1.0672 16 6 3.6921 3.5899 -1.1522 17 6 4.0740 2.8879 0.1548 18 6 3.5656 1.4449 0.1216 19 1 3.8574 0.9359 1.0402 20 7 4.1479 0.7485 -1.0281 21 6 5.3861 0.1727 -0.9246 22 1 5.9333 0.2323 0.0045 23 6 5.9381 -0.4868 -2.0143 24 7 5.2713 -0.5589 -3.1467 25 14 7.6273 -1.2716 -1.8732 26 1 8.1632 -1.0507 -0.5061 27 1 7.5190 -2.7297 -2.1334 28 1 8.5428 -0.6580 -2.8684 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.9907 1.5398 -2.1547 35 1 0.5494 2.2150 -1.3550 36 1 0.4670 7.2434 -2.1359 37 1 5.5283 7.2246 -0.4047 38 1 5.2340 8.5507 -1.5547 39 1 4.6633 8.6873 0.1258 40 1 4.2155 3.1208 -1.9853 41 1 3.9640 4.6439 -1.0939 42 1 5.1584 2.8892 0.2649 43 1 3.6219 3.4138 0.9958 44 1 3.6566 0.6953 -1.8628 45 1 5.6569 -1.0200 -3.9081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037826921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:59 Heat of formation + Delta-G solvation = 33.132354 kcal Electronic energy + Delta-G solvation = -28872.273018 eV Core-core repulsion = 24895.482152 eV Total energy + Delta-G solvation = -3976.790867 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.21936 -40.30122 -38.25800 -38.12001 -34.89352 -34.28826 -33.84119 -32.36833 -31.85395 -29.69135 -29.08528 -27.91000 -25.65046 -24.07363 -23.70461 -23.61646 -22.76348 -20.93321 -20.25958 -18.84379 -18.51889 -17.99161 -17.47408 -17.13375 -16.36418 -15.41653 -15.37377 -15.04946 -14.76614 -14.49270 -14.21512 -13.99813 -13.95705 -13.79662 -13.57630 -13.39060 -13.25561 -13.19924 -13.11029 -12.66314 -12.34694 -11.83430 -11.56917 -11.21869 -11.04548 -10.92373 -10.80792 -10.60082 -10.42872 -10.38323 -10.22984 -10.11653 -10.05976 -9.92000 -9.66648 -9.03109 -8.67204 -8.53111 -7.08251 -5.88298 -3.17357 0.44731 1.43182 2.47783 2.66209 2.92173 3.24230 3.34917 3.41320 3.43599 4.23164 4.49201 4.52015 4.83292 4.86731 4.90310 5.01058 5.10827 5.15529 5.18904 5.33423 5.38362 5.49048 5.57809 5.62482 5.64432 5.66897 5.76986 5.80437 5.92722 6.02628 6.11377 6.19420 6.23855 6.31024 6.39450 6.46714 6.57161 6.62777 6.78450 6.85697 7.22607 7.48170 7.60739 7.78085 7.92619 8.29829 9.41969 9.97008 10.31861 11.33939 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012650 B = 0.004103 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.849594 B = 6822.287091 C = 8355.586084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.110 4.110 3 C -0.104 4.104 4 H 0.069 0.931 5 C 0.118 3.882 6 N -0.582 5.582 7 C 0.593 3.407 8 O -0.510 6.510 9 C 0.041 3.959 10 C -0.244 4.244 11 C 0.482 3.518 12 O -0.528 6.528 13 N -0.458 5.458 14 C 0.107 3.893 15 O 0.002 5.998 16 C 0.103 3.897 17 C -0.148 4.148 18 C 0.177 3.823 19 H 0.054 0.946 20 N -0.719 5.719 21 C -0.240 4.240 22 H 0.071 0.929 23 C -0.009 4.009 24 N -0.931 5.931 25 Si 0.903 3.097 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.293 1.293 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.191 0.809 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.050 0.950 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.379 10.296 6.654 13.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.148 4.148 3 C -0.124 4.124 4 H 0.087 0.913 5 C -0.003 4.003 6 N -0.313 5.313 7 C 0.377 3.623 8 O -0.386 6.386 9 C -0.017 4.017 10 C -0.269 4.269 11 C 0.280 3.720 12 O -0.410 6.410 13 N -0.223 5.223 14 C -0.029 4.029 15 O -0.006 6.006 16 C -0.019 4.019 17 C -0.189 4.189 18 C 0.067 3.933 19 H 0.072 0.928 20 N -0.361 5.361 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.206 4.206 24 N -0.579 5.579 25 Si 0.735 3.265 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.220 1.220 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.208 0.792 37 H 0.118 0.882 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.069 0.931 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.523 10.709 6.606 13.371 hybrid contribution 0.983 -0.469 -0.283 1.126 sum -3.540 10.240 6.323 12.544 Atomic orbital electron populations 1.21869 0.96711 1.01229 1.01379 1.21417 0.94343 0.95413 1.03604 1.21784 0.97565 0.96392 0.96663 0.91287 1.21896 0.98910 0.80378 0.99146 1.48149 1.09229 1.06409 1.67476 1.16916 0.85569 0.80818 0.79004 1.90849 1.14620 1.84164 1.49010 1.23562 0.82737 0.97094 0.98313 1.23272 1.03222 0.90723 1.09691 1.18316 0.82529 0.89670 0.81495 1.90948 1.80679 1.12293 1.57049 1.46281 1.16412 0.96433 1.63176 1.22124 0.79997 0.98357 1.02445 1.84373 1.30444 1.10169 1.75621 1.22267 0.78138 1.00598 1.00853 1.22540 1.02147 0.99236 0.95022 1.20244 0.89623 0.90590 0.92876 0.92774 1.42483 1.19097 1.64038 1.10496 1.19245 0.93494 1.27214 0.97146 0.91152 1.24700 0.98526 1.01334 0.95998 1.69648 1.38020 1.47938 1.02272 0.86182 0.84223 0.78979 0.77145 1.20626 1.21921 1.21973 0.93310 0.93034 0.92742 0.91815 0.90340 0.89818 0.89053 0.79161 0.88176 0.89264 0.89359 0.88759 0.89709 0.90370 0.93099 0.78111 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.67 37.16 0.36 -1.51 16 2 C -0.11 -1.57 5.19 -26.73 -0.14 -1.71 16 3 C -0.10 -1.50 2.14 -90.50 -0.19 -1.69 16 4 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 5 C 0.12 1.75 5.01 -3.71 -0.02 1.73 16 6 N -0.58 -8.48 2.97 -173.74 -0.52 -8.99 16 7 C 0.59 8.75 7.71 -12.16 -0.09 8.66 16 8 O -0.51 -8.55 16.35 5.37 0.09 -8.47 16 9 C 0.04 0.54 6.94 -36.18 -0.25 0.29 16 10 C -0.24 -3.21 10.94 -38.70 -0.42 -3.63 16 11 C 0.48 6.79 8.02 -14.66 -0.12 6.67 16 12 O -0.53 -8.93 17.92 4.94 0.09 -8.85 16 13 N -0.46 -5.29 3.68 -69.77 -0.26 -5.55 16 14 C 0.11 0.79 11.18 59.85 0.67 1.46 16 15 O 0.00 0.03 7.44 16.85 0.13 0.15 16 16 C 0.10 1.49 6.08 -3.71 -0.02 1.46 16 17 C -0.15 -2.17 5.78 -26.61 -0.15 -2.32 16 18 C 0.18 2.95 2.53 -67.89 -0.17 2.78 16 19 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 20 N -0.72 -15.16 3.72 -53.39 -0.20 -15.36 16 21 C -0.24 -5.87 9.93 -15.06 -0.15 -6.02 16 22 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 23 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 24 N -0.93 -25.83 13.06 55.49 0.72 -25.11 16 25 Si 0.90 20.88 29.55 -169.99 -5.02 15.86 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 31 H 0.05 0.66 6.69 -51.93 -0.35 0.31 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.33 7.69 -51.93 -0.40 0.93 16 34 H 0.08 1.39 6.64 -51.92 -0.34 1.05 16 35 H 0.09 1.33 5.76 -51.93 -0.30 1.03 16 36 H 0.19 2.25 8.06 -52.48 -0.42 1.82 16 37 H 0.10 0.53 8.14 -51.92 -0.42 0.10 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 40 H 0.09 1.61 7.74 -51.93 -0.40 1.21 16 41 H 0.09 1.08 3.84 -54.58 -0.21 0.87 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.38 8.73 5.94 -40.82 -0.24 8.49 16 45 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 362.49 15.07 5.46 5.46 Total: -1.00 -30.34 362.49 -6.75 -37.08 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -6.44 Total: 7.94 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -0.80 Total: 5.83 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.25 Total: -55.01 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: 0.30 Total: -17.16 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.34 -6.75 -37.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037826921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.216 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds