Wall clock time and date at job start Tue Mar 31 2020 13:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46754 * 2 1 4 4 H 1.09003 * 109.49719 * 55.06848 * 3 2 1 5 5 C 1.53191 * 109.49890 * 295.00277 * 3 2 1 6 6 N 1.46929 * 108.77307 * 185.41802 * 5 3 2 7 7 C 1.34774 * 120.62799 * 233.62828 * 6 5 3 8 8 O 1.21496 * 119.99843 * 353.90652 * 7 6 5 9 9 C 1.48208 * 119.99937 * 173.90644 * 7 6 5 10 10 C 1.36317 * 126.38421 * 173.51253 * 9 7 6 11 11 C 1.42343 * 104.00784 * 179.97438 * 10 9 7 12 12 O 1.21974 * 127.14827 * 180.09118 * 11 10 9 13 13 N 1.34828 * 105.70135 * 0.33434 * 11 10 9 14 14 C 1.46498 * 124.56453 * 179.80493 * 13 11 10 15 15 O 1.20922 * 110.86725 * 359.78385 * 13 11 10 16 16 C 1.46926 * 118.74020 * 53.60550 * 6 5 3 17 17 C 1.53193 * 108.77752 * 306.39319 * 16 6 5 18 18 C 1.53034 * 109.31052 * 54.63501 * 17 16 6 19 19 H 1.09003 * 109.45429 * 178.61944 * 18 17 16 20 20 N 1.46494 * 109.46252 * 58.65845 * 18 17 16 21 21 C 1.36939 * 120.00066 * 84.93089 * 20 18 17 22 22 H 1.07997 * 119.99903 * 359.97438 * 21 20 18 23 23 C 1.38817 * 120.00021 * 180.02562 * 21 20 18 24 24 N 1.31616 * 119.99753 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99869 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47115 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47100 * 119.99982 * 25 23 21 28 28 H 1.48496 * 109.46818 * 239.99439 * 25 23 21 29 29 H 1.08999 * 109.46829 * 299.99530 * 1 2 3 30 30 H 1.09007 * 109.47161 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47482 * 59.99995 * 1 2 3 32 32 H 1.08997 * 109.46880 * 120.00384 * 2 1 3 33 33 H 1.08999 * 109.46829 * 240.00470 * 2 1 3 34 34 H 1.09008 * 109.58503 * 305.19476 * 5 3 2 35 35 H 1.08996 * 109.59010 * 65.48204 * 5 3 2 36 36 H 1.08003 * 127.99719 * 0.02562 * 10 9 7 37 37 H 1.09008 * 109.47040 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.47354 * 300.00198 * 14 13 11 39 39 H 1.09007 * 109.47515 * 60.00425 * 14 13 11 40 40 H 1.09002 * 109.58784 * 66.17930 * 16 6 5 41 41 H 1.09005 * 109.58535 * 186.60489 * 16 6 5 42 42 H 1.08996 * 109.49318 * 174.58772 * 17 16 6 43 43 H 1.09006 * 109.49510 * 294.68418 * 17 16 6 44 44 H 0.97002 * 120.00310 * 264.93235 * 20 18 17 45 45 H 0.97001 * 119.99943 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9816 0.8424 5 6 1.6349 2.1280 -1.3087 6 7 2.2414 3.4657 -1.3493 7 6 1.4814 4.5580 -1.5627 8 8 0.3034 4.4349 -1.8336 9 6 2.0826 5.9093 -1.4671 10 6 1.4733 7.0891 -1.7756 11 6 2.4698 8.0707 -1.5119 12 8 2.3674 9.2787 -1.6458 13 7 3.5523 7.3873 -1.0887 14 6 4.8259 8.0018 -0.7060 15 8 3.3301 6.1989 -1.0672 16 6 3.6921 3.5899 -1.1522 17 6 4.0740 2.8879 0.1548 18 6 3.5656 1.4449 0.1216 19 1 3.8574 0.9359 1.0402 20 7 4.1479 0.7485 -1.0281 21 6 5.3861 0.1727 -0.9246 22 1 5.9333 0.2323 0.0045 23 6 5.9381 -0.4868 -2.0143 24 7 5.2713 -0.5589 -3.1467 25 14 7.6273 -1.2716 -1.8732 26 1 8.1632 -1.0507 -0.5061 27 1 7.5190 -2.7297 -2.1334 28 1 8.5428 -0.6580 -2.8684 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.9907 1.5398 -2.1547 35 1 0.5494 2.2150 -1.3550 36 1 0.4670 7.2434 -2.1359 37 1 5.5283 7.2246 -0.4047 38 1 5.2340 8.5507 -1.5547 39 1 4.6633 8.6873 0.1258 40 1 4.2155 3.1208 -1.9853 41 1 3.9640 4.6439 -1.0939 42 1 5.1584 2.8892 0.2649 43 1 3.6219 3.4138 0.9958 44 1 3.6566 0.6953 -1.8628 45 1 5.6569 -1.0200 -3.9081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037826921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:58 Heat of formation + Delta-G solvation = 14.522284 kcal Electronic energy + Delta-G solvation = -28873.080012 eV Core-core repulsion = 24895.482152 eV Total energy + Delta-G solvation = -3977.597860 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.24560 -41.52739 -39.42676 -39.35069 -36.14714 -35.50690 -35.11318 -33.47017 -33.40420 -31.07605 -30.37112 -28.89262 -26.87173 -25.51156 -25.16187 -24.68577 -23.88324 -22.14384 -21.38719 -20.08876 -19.52513 -19.30032 -18.97314 -18.33584 -17.55726 -16.73414 -16.45424 -16.29124 -16.23681 -15.81852 -15.57608 -15.27246 -15.14050 -14.96339 -14.72605 -14.58947 -14.44603 -14.19578 -14.03407 -13.69108 -13.61905 -13.04226 -12.91285 -12.87159 -12.63895 -12.38120 -12.10290 -12.02327 -11.84733 -11.77014 -11.54605 -11.43300 -11.25987 -11.12115 -11.09374 -10.80644 -9.80911 -9.67432 -8.89461 -7.86325 -5.11784 -0.63034 0.48282 1.36431 1.50446 1.53154 1.54261 1.60466 1.79762 2.15313 2.62075 3.12044 3.48446 3.54880 3.79416 3.85132 3.88022 4.00009 4.07248 4.21277 4.29961 4.32980 4.33733 4.44204 4.48895 4.58409 4.63117 4.67139 4.69056 4.74164 4.85077 4.99605 5.01627 5.06100 5.18392 5.22283 5.27781 5.28729 5.43035 5.52164 5.62402 5.66825 6.04778 6.35853 6.41083 6.63176 6.88229 7.44190 8.20215 8.42928 9.36971 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012650 B = 0.004103 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.849594 B = 6822.287091 C = 8355.586084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.093 4.093 4 H 0.092 0.908 5 C 0.123 3.877 6 N -0.582 5.582 7 C 0.599 3.401 8 O -0.530 6.530 9 C 0.038 3.962 10 C -0.240 4.240 11 C 0.472 3.528 12 O -0.564 6.564 13 N -0.448 5.448 14 C 0.094 3.906 15 O 0.013 5.987 16 C 0.111 3.889 17 C -0.140 4.140 18 C 0.170 3.830 19 H 0.052 0.948 20 N -0.724 5.724 21 C -0.222 4.222 22 H 0.077 0.923 23 C -0.070 4.070 24 N -0.968 5.968 25 Si 0.958 3.042 26 H -0.266 1.266 27 H -0.303 1.303 28 H -0.301 1.301 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.200 0.800 37 H 0.125 0.875 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.064 0.936 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.374 0.626 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.210 11.338 8.655 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 C -0.113 4.113 4 H 0.110 0.890 5 C 0.001 3.999 6 N -0.311 5.311 7 C 0.384 3.616 8 O -0.408 6.408 9 C -0.021 4.021 10 C -0.265 4.265 11 C 0.271 3.729 12 O -0.448 6.448 13 N -0.210 5.210 14 C -0.041 4.041 15 O 0.003 5.997 16 C -0.011 4.011 17 C -0.180 4.180 18 C 0.062 3.938 19 H 0.070 0.930 20 N -0.365 5.365 21 C -0.354 4.354 22 H 0.095 0.905 23 C -0.262 4.262 24 N -0.619 5.619 25 Si 0.789 3.211 26 H -0.191 1.191 27 H -0.231 1.231 28 H -0.228 1.228 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.217 0.783 37 H 0.144 0.856 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.082 0.918 41 H 0.123 0.877 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.207 0.793 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.319 11.768 8.678 15.247 hybrid contribution 0.927 -0.759 -0.828 1.456 sum -3.392 11.009 7.850 13.941 Atomic orbital electron populations 1.21810 0.94716 1.01955 1.02071 1.21337 0.96072 0.94996 1.01939 1.21704 0.95872 0.96634 0.97076 0.89007 1.21785 0.99172 0.80379 0.98549 1.48133 1.09254 1.06321 1.67439 1.16940 0.85254 0.81131 0.78295 1.90841 1.15549 1.84609 1.49849 1.23172 0.83246 0.96300 0.99361 1.23438 1.03642 0.90443 1.08990 1.18403 0.83315 0.89343 0.81879 1.90930 1.81443 1.13518 1.58953 1.46583 1.17039 0.95882 1.61513 1.22592 0.78630 0.99406 1.03452 1.84311 1.29852 1.10501 1.75011 1.22150 0.77730 1.01554 0.99643 1.22407 1.01934 0.97661 0.96016 1.20485 0.91066 0.91356 0.90939 0.92994 1.42599 1.18204 1.64282 1.11459 1.19589 0.94193 1.24955 0.96676 0.90527 1.25310 1.01459 1.03284 0.96195 1.69790 1.39394 1.49879 1.02850 0.85291 0.81093 0.77321 0.77363 1.19069 1.23095 1.22844 0.91680 0.92407 0.92882 0.91833 0.93589 0.92211 0.88404 0.78272 0.85630 0.88322 0.87941 0.91759 0.87683 0.90874 0.90277 0.79252 0.94495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.67 71.98 0.70 -2.64 16 2 C -0.11 -2.92 5.19 30.59 0.16 -2.76 16 3 C -0.09 -2.53 2.14 -10.72 -0.02 -2.55 16 4 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 5 C 0.12 3.55 5.01 86.36 0.43 3.99 16 6 N -0.58 -16.12 2.97 -821.90 -2.44 -18.56 16 7 C 0.60 16.71 7.71 86.89 0.67 17.37 16 8 O -0.53 -17.10 16.35 -3.70 -0.06 -17.16 16 9 C 0.04 0.92 6.94 24.47 0.17 1.09 16 10 C -0.24 -5.96 10.94 22.84 0.25 -5.71 16 11 C 0.47 12.58 8.02 85.25 0.68 13.26 16 12 O -0.56 -18.60 17.92 -5.23 -0.09 -18.69 16 13 N -0.45 -9.25 3.68 -492.73 -1.82 -11.07 16 14 C 0.09 1.10 11.18 127.77 1.43 2.52 16 15 O 0.01 0.27 7.44 70.46 0.52 0.79 16 16 C 0.11 3.02 6.08 86.36 0.53 3.54 16 17 C -0.14 -3.73 5.78 30.67 0.18 -3.55 16 18 C 0.17 5.42 2.53 45.02 0.11 5.53 16 19 H 0.05 1.70 8.08 -2.39 -0.02 1.68 16 20 N -0.72 -30.55 3.72 -322.82 -1.20 -31.75 16 21 C -0.22 -10.79 9.93 84.03 0.83 -9.95 16 22 H 0.08 3.58 7.83 -2.91 -0.02 3.56 16 23 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 24 N -0.97 -55.16 13.06 21.65 0.28 -54.87 16 25 Si 0.96 43.27 29.55 68.60 2.03 45.29 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 27 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 28 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.05 1.21 6.69 -2.39 -0.02 1.19 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.05 1.58 7.69 -2.39 -0.02 1.56 16 34 H 0.06 2.04 6.64 -2.38 -0.02 2.03 16 35 H 0.10 2.73 5.76 -2.39 -0.01 2.72 16 36 H 0.20 4.46 8.06 -2.91 -0.02 4.44 16 37 H 0.13 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.10 0.97 8.14 -2.38 -0.02 0.96 16 40 H 0.06 2.18 7.74 -2.39 -0.02 2.16 16 41 H 0.11 2.41 3.84 -44.36 -0.17 2.24 16 42 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 44 H 0.37 17.43 5.94 -92.71 -0.55 16.88 16 45 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -65.76 362.49 4.11 -61.65 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: 0.31 Total: 27.43 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 6.58 Total: 16.93 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -5.18 Total: -116.25 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: 0.37 Total: -35.06 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -65.76 4.11 -61.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037826921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.169 kcal (2) G-P(sol) polarization free energy of solvation -65.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds