Wall clock time and date at job start Tue Mar 31 2020 13:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47096 * 2 1 4 4 H 1.09008 * 109.49609 * 305.00110 * 3 2 1 5 5 C 1.53192 * 109.49709 * 65.06566 * 3 2 1 6 6 N 1.46923 * 108.77742 * 174.58598 * 5 3 2 7 7 C 1.34770 * 120.63421 * 126.41165 * 6 5 3 8 8 O 1.21501 * 119.99869 * 352.97205 * 7 6 5 9 9 C 1.48208 * 120.00250 * 172.97387 * 7 6 5 10 10 C 1.36319 * 126.38448 * 173.07166 * 9 7 6 11 11 C 1.42340 * 104.00845 * 179.97438 * 10 9 7 12 12 O 1.21978 * 127.15001 * 180.08726 * 11 10 9 13 13 N 1.34833 * 105.70366 * 0.33176 * 11 10 9 14 14 C 1.46493 * 124.57089 * 179.76306 * 13 11 10 15 15 O 1.20919 * 110.86139 * 359.78727 * 13 11 10 16 16 C 1.46931 * 118.73871 * 306.39720 * 6 5 3 17 17 C 1.53183 * 108.77664 * 53.60173 * 16 6 5 18 18 C 1.53035 * 109.49843 * 184.93744 * 3 2 1 19 19 H 1.09003 * 109.45769 * 298.70275 * 18 3 2 20 20 N 1.46502 * 109.46259 * 58.66050 * 18 3 2 21 21 C 1.36931 * 120.00124 * 204.99997 * 20 18 3 22 22 H 1.07992 * 120.00281 * 0.02562 * 21 20 18 23 23 C 1.38819 * 119.99798 * 180.02562 * 21 20 18 24 24 N 1.31618 * 119.99762 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99934 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.46757 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47173 * 119.99480 * 25 23 21 28 28 H 1.48496 * 109.46800 * 239.99815 * 25 23 21 29 29 H 1.09002 * 109.46865 * 299.99783 * 1 2 3 30 30 H 1.09003 * 109.47481 * 59.99827 * 1 2 3 31 31 H 1.08999 * 109.47054 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46865 * 240.00217 * 2 1 3 33 33 H 1.08993 * 109.47487 * 120.00054 * 2 1 3 34 34 H 1.08999 * 109.58624 * 294.37670 * 5 3 2 35 35 H 1.08996 * 109.58697 * 54.65561 * 5 3 2 36 36 H 1.08006 * 127.99603 * 0.02562 * 10 9 7 37 37 H 1.08994 * 109.47763 * 180.02562 * 14 13 11 38 38 H 1.09002 * 109.47001 * 300.00893 * 14 13 11 39 39 H 1.09008 * 109.47114 * 60.00155 * 14 13 11 40 40 H 1.09001 * 109.58949 * 173.39470 * 16 6 5 41 41 H 1.09003 * 109.58184 * 293.67539 * 16 6 5 42 42 H 1.09005 * 109.49576 * 65.32422 * 17 16 6 43 43 H 1.09008 * 109.49845 * 185.38297 * 17 16 6 44 44 H 0.96997 * 119.99450 * 25.00437 * 20 18 3 45 45 H 0.97000 * 119.99355 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6056 1.9820 -0.8417 5 6 1.6365 2.1275 1.3095 6 7 2.2429 3.4651 1.3500 7 6 1.4833 4.5573 1.5656 8 8 0.2729 4.4580 1.6014 9 6 2.1244 5.8794 1.7589 10 6 1.4874 7.0810 1.8531 11 6 2.5440 8.0181 2.0310 12 8 2.4424 9.2264 2.1634 13 7 3.6808 7.2933 2.0171 14 6 5.0261 7.8542 2.1637 15 8 3.4403 6.1178 1.8669 16 6 3.6934 3.5894 1.1512 17 6 4.0738 2.8881 -0.1564 18 6 3.5653 1.4450 -0.1242 19 1 4.0000 0.9263 0.7303 20 7 3.9556 0.7615 -1.3598 21 6 5.1938 0.1858 -1.4620 22 1 5.8825 0.2352 -0.6317 23 6 5.5638 -0.4613 -2.6331 24 7 4.7242 -0.5220 -3.6449 25 14 7.2526 -1.2474 -2.7724 26 1 8.0003 -1.0415 -1.5059 27 1 7.1019 -2.7024 -3.0278 28 1 7.9984 -0.6224 -3.8941 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 0.5511 2.2168 1.3558 35 1 1.9909 1.5376 2.1547 36 1 0.4263 7.2765 1.8049 37 1 5.7618 7.0515 2.1159 38 1 5.2126 8.5659 1.3594 39 1 5.1049 8.3631 3.1245 40 1 3.9653 4.6434 1.0931 41 1 4.2178 3.1222 1.9849 42 1 3.6208 3.4143 -0.9966 43 1 5.1582 2.8898 -0.2681 44 1 3.3369 0.7169 -2.1055 45 1 4.9826 -0.9745 -4.4630 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037826924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:02 Heat of formation + Delta-G solvation = 29.002173 kcal Electronic energy + Delta-G solvation = -28386.879218 eV Core-core repulsion = 24409.909253 eV Total energy + Delta-G solvation = -3976.969965 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.33663 -40.39625 -38.35333 -38.09347 -35.11845 -34.48941 -33.84131 -32.47421 -31.88227 -29.71293 -29.38205 -27.96904 -25.61336 -24.14989 -23.74623 -23.53512 -22.34199 -20.97255 -20.34998 -19.57121 -18.65104 -18.23724 -17.40043 -17.17548 -16.49664 -15.57888 -15.40254 -15.22407 -14.93471 -14.37379 -14.18406 -14.04037 -13.96980 -13.79773 -13.64926 -13.46859 -13.35519 -13.20960 -13.19727 -12.84070 -12.25740 -11.92189 -11.71486 -11.41873 -11.03095 -10.93791 -10.82079 -10.71783 -10.47531 -10.30017 -10.23574 -10.22174 -10.20609 -9.82776 -9.71652 -9.00877 -8.81984 -8.72465 -7.05888 -5.85798 -3.15088 0.32663 1.32887 2.35735 2.49659 2.78645 3.10013 3.36255 3.41859 3.44534 4.09580 4.41602 4.49615 4.73187 4.78110 4.79324 4.90820 5.06606 5.06880 5.07867 5.19322 5.30654 5.39118 5.50041 5.53368 5.54500 5.55945 5.72089 5.73555 5.89886 5.98855 6.04302 6.15052 6.21948 6.25337 6.35028 6.38886 6.54308 6.69671 6.84535 6.92264 7.03306 7.36069 7.61082 7.63618 7.78687 8.32017 9.43951 10.00131 10.34853 11.36472 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.003511 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.910630 B = 7972.947231 C = 9581.123574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.106 4.106 4 H 0.073 0.927 5 C 0.118 3.882 6 N -0.588 5.588 7 C 0.597 3.403 8 O -0.505 6.505 9 C 0.038 3.962 10 C -0.240 4.240 11 C 0.482 3.518 12 O -0.525 6.525 13 N -0.457 5.457 14 C 0.108 3.892 15 O 0.000 6.000 16 C 0.098 3.902 17 C -0.151 4.151 18 C 0.183 3.817 19 H 0.050 0.950 20 N -0.719 5.719 21 C -0.241 4.241 22 H 0.071 0.929 23 C -0.010 4.010 24 N -0.930 5.930 25 Si 0.904 3.096 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.192 0.808 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.832 10.233 12.797 16.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.126 4.126 4 H 0.091 0.909 5 C -0.003 4.003 6 N -0.319 5.319 7 C 0.381 3.619 8 O -0.381 6.381 9 C -0.020 4.020 10 C -0.265 4.265 11 C 0.280 3.720 12 O -0.406 6.406 13 N -0.222 5.222 14 C -0.029 4.029 15 O -0.009 6.009 16 C -0.025 4.025 17 C -0.192 4.192 18 C 0.072 3.928 19 H 0.068 0.932 20 N -0.359 5.359 21 C -0.372 4.372 22 H 0.089 0.911 23 C -0.207 4.207 24 N -0.578 5.578 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.209 0.791 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.099 0.901 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.970 10.642 12.912 16.994 hybrid contribution 0.898 -0.399 -0.516 1.109 sum -2.073 10.242 12.397 16.214 Atomic orbital electron populations 1.21855 0.96690 1.01193 1.01359 1.21452 0.94455 0.95384 1.03670 1.21810 0.97798 0.96520 0.96455 0.90874 1.21953 0.99629 0.80099 0.98641 1.48160 1.09196 1.06595 1.67992 1.16880 0.85955 0.80683 0.78398 1.90866 1.12060 1.83363 1.51762 1.23478 0.80863 0.97268 1.00411 1.23307 1.02398 0.90892 1.09913 1.18319 0.82662 0.89340 0.81717 1.90961 1.83582 1.11781 1.54316 1.46240 1.10587 0.96936 1.68432 1.22136 0.76996 0.99456 1.04313 1.84307 1.25089 1.11884 1.79602 1.22310 0.78431 1.01736 0.99996 1.22720 1.02558 0.99316 0.94629 1.20194 0.90683 0.90419 0.91480 0.93206 1.42405 1.16536 1.64343 1.12660 1.19240 0.91764 1.27554 0.98645 0.91144 1.24734 0.98129 1.01416 0.96407 1.69665 1.35166 1.48200 1.04750 0.86165 0.83963 0.78942 0.77369 1.20584 1.21869 1.21919 0.93200 0.92887 0.93065 0.89616 0.92323 0.88600 0.90680 0.79067 0.88181 0.89172 0.89289 0.89383 0.90583 0.92000 0.90149 0.78125 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.67 37.16 0.36 -1.56 16 2 C -0.11 -1.63 5.31 -26.73 -0.14 -1.77 16 3 C -0.11 -1.55 1.92 -90.50 -0.17 -1.72 16 4 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 5 C 0.12 1.47 5.34 -3.71 -0.02 1.45 16 6 N -0.59 -7.28 2.97 -173.75 -0.52 -7.80 16 7 C 0.60 7.82 7.70 -12.17 -0.09 7.73 16 8 O -0.50 -7.74 16.33 5.36 0.09 -7.66 16 9 C 0.04 0.44 6.88 -36.18 -0.25 0.19 16 10 C -0.24 -2.89 10.94 -38.70 -0.42 -3.31 16 11 C 0.48 6.29 8.02 -14.66 -0.12 6.18 16 12 O -0.53 -8.44 17.92 4.94 0.09 -8.36 16 13 N -0.46 -4.74 3.68 -69.77 -0.26 -4.99 16 14 C 0.11 0.67 11.18 59.84 0.67 1.34 16 15 O 0.00 0.00 7.55 16.85 0.13 0.13 16 16 C 0.10 1.13 6.14 -3.71 -0.02 1.11 16 17 C -0.15 -2.26 5.66 -26.62 -0.15 -2.41 16 18 C 0.18 3.11 2.19 -67.89 -0.15 2.96 16 19 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 20 N -0.72 -16.09 4.33 -53.39 -0.23 -16.32 16 21 C -0.24 -6.11 9.93 -15.06 -0.15 -6.26 16 22 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 23 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 24 N -0.93 -26.63 13.06 55.49 0.72 -25.91 16 25 Si 0.90 21.22 29.55 -169.99 -5.02 16.20 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H 0.05 0.56 6.70 -51.93 -0.35 0.21 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 1.54 7.22 -51.93 -0.37 1.16 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.10 1.22 5.72 -51.93 -0.30 0.92 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.19 2.06 8.06 -52.48 -0.42 1.64 16 37 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 40 H 0.09 0.93 4.24 -52.79 -0.22 0.71 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 44 H 0.38 9.40 7.51 -40.82 -0.31 9.09 16 45 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 366.34 15.07 5.52 5.52 Total: -1.00 -31.70 366.34 -6.83 -38.53 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -6.59 Total: 7.11 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -0.76 Total: 3.54 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.28 Total: -55.02 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.30 Total: -15.88 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.70 -6.83 -38.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037826924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.532 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds