Wall clock time and date at job start Tue Mar 31 2020 13:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47096 * 2 1 4 4 H 1.09008 * 109.49609 * 305.00110 * 3 2 1 5 5 C 1.53192 * 109.49709 * 65.06566 * 3 2 1 6 6 N 1.46923 * 108.77742 * 174.58598 * 5 3 2 7 7 C 1.34770 * 120.63421 * 126.41165 * 6 5 3 8 8 O 1.21501 * 119.99869 * 352.97205 * 7 6 5 9 9 C 1.48208 * 120.00250 * 172.97387 * 7 6 5 10 10 C 1.36319 * 126.38448 * 173.07166 * 9 7 6 11 11 C 1.42340 * 104.00845 * 179.97438 * 10 9 7 12 12 O 1.21978 * 127.15001 * 180.08726 * 11 10 9 13 13 N 1.34833 * 105.70366 * 0.33176 * 11 10 9 14 14 C 1.46493 * 124.57089 * 179.76306 * 13 11 10 15 15 O 1.20919 * 110.86139 * 359.78727 * 13 11 10 16 16 C 1.46931 * 118.73871 * 306.39720 * 6 5 3 17 17 C 1.53183 * 108.77664 * 53.60173 * 16 6 5 18 18 C 1.53035 * 109.49843 * 184.93744 * 3 2 1 19 19 H 1.09003 * 109.45769 * 298.70275 * 18 3 2 20 20 N 1.46502 * 109.46259 * 58.66050 * 18 3 2 21 21 C 1.36931 * 120.00124 * 204.99997 * 20 18 3 22 22 H 1.07992 * 120.00281 * 0.02562 * 21 20 18 23 23 C 1.38819 * 119.99798 * 180.02562 * 21 20 18 24 24 N 1.31618 * 119.99762 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99934 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.46757 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47173 * 119.99480 * 25 23 21 28 28 H 1.48496 * 109.46800 * 239.99815 * 25 23 21 29 29 H 1.09002 * 109.46865 * 299.99783 * 1 2 3 30 30 H 1.09003 * 109.47481 * 59.99827 * 1 2 3 31 31 H 1.08999 * 109.47054 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46865 * 240.00217 * 2 1 3 33 33 H 1.08993 * 109.47487 * 120.00054 * 2 1 3 34 34 H 1.08999 * 109.58624 * 294.37670 * 5 3 2 35 35 H 1.08996 * 109.58697 * 54.65561 * 5 3 2 36 36 H 1.08006 * 127.99603 * 0.02562 * 10 9 7 37 37 H 1.08994 * 109.47763 * 180.02562 * 14 13 11 38 38 H 1.09002 * 109.47001 * 300.00893 * 14 13 11 39 39 H 1.09008 * 109.47114 * 60.00155 * 14 13 11 40 40 H 1.09001 * 109.58949 * 173.39470 * 16 6 5 41 41 H 1.09003 * 109.58184 * 293.67539 * 16 6 5 42 42 H 1.09005 * 109.49576 * 65.32422 * 17 16 6 43 43 H 1.09008 * 109.49845 * 185.38297 * 17 16 6 44 44 H 0.96997 * 119.99450 * 25.00437 * 20 18 3 45 45 H 0.97000 * 119.99355 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6056 1.9820 -0.8417 5 6 1.6365 2.1275 1.3095 6 7 2.2429 3.4651 1.3500 7 6 1.4833 4.5573 1.5656 8 8 0.2729 4.4580 1.6014 9 6 2.1244 5.8794 1.7589 10 6 1.4874 7.0810 1.8531 11 6 2.5440 8.0181 2.0310 12 8 2.4424 9.2264 2.1634 13 7 3.6808 7.2933 2.0171 14 6 5.0261 7.8542 2.1637 15 8 3.4403 6.1178 1.8669 16 6 3.6934 3.5894 1.1512 17 6 4.0738 2.8881 -0.1564 18 6 3.5653 1.4450 -0.1242 19 1 4.0000 0.9263 0.7303 20 7 3.9556 0.7615 -1.3598 21 6 5.1938 0.1858 -1.4620 22 1 5.8825 0.2352 -0.6317 23 6 5.5638 -0.4613 -2.6331 24 7 4.7242 -0.5220 -3.6449 25 14 7.2526 -1.2474 -2.7724 26 1 8.0003 -1.0415 -1.5059 27 1 7.1019 -2.7024 -3.0278 28 1 7.9984 -0.6224 -3.8941 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 0.5511 2.2168 1.3558 35 1 1.9909 1.5376 2.1547 36 1 0.4263 7.2765 1.8049 37 1 5.7618 7.0515 2.1159 38 1 5.2126 8.5659 1.3594 39 1 5.1049 8.3631 3.1245 40 1 3.9653 4.6434 1.0931 41 1 4.2178 3.1222 1.9849 42 1 3.6208 3.4143 -0.9966 43 1 5.1582 2.8898 -0.2681 44 1 3.3369 0.7169 -2.1055 45 1 4.9826 -0.9745 -4.4630 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037826924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:01 Heat of formation + Delta-G solvation = 8.664596 kcal Electronic energy + Delta-G solvation = -28387.761121 eV Core-core repulsion = 24409.909253 eV Total energy + Delta-G solvation = -3977.851869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.25730 -41.48314 -39.38303 -39.30634 -36.38623 -35.56940 -35.08908 -33.51080 -33.41154 -31.15674 -30.49252 -28.87490 -26.91147 -25.39456 -24.91818 -24.66999 -23.51690 -22.21177 -21.43499 -20.77196 -19.54985 -19.22791 -18.95035 -18.35904 -17.57518 -16.81051 -16.56847 -16.34397 -16.12459 -15.63765 -15.55813 -15.29933 -15.04955 -14.98296 -14.68076 -14.59264 -14.49815 -14.25212 -14.01537 -13.67615 -13.59872 -13.11098 -13.03444 -12.85657 -12.65054 -12.52196 -12.12783 -12.03928 -11.83350 -11.76890 -11.55817 -11.48471 -11.28150 -11.11497 -11.08096 -10.82673 -9.88479 -9.66846 -8.93856 -7.88849 -5.15924 -0.63247 0.49394 1.34963 1.50189 1.51208 1.51833 1.60074 1.79291 2.14099 2.60009 3.12949 3.45174 3.55286 3.77424 3.78942 3.86170 3.95775 4.05110 4.20410 4.28285 4.33918 4.34541 4.42026 4.47483 4.63349 4.65017 4.67239 4.69938 4.78759 4.79948 4.84550 4.97295 5.02559 5.05181 5.18310 5.28122 5.37034 5.46968 5.54882 5.61014 5.65646 6.00009 6.32747 6.40123 6.62650 6.86526 7.39771 8.16272 8.38299 9.34859 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.003511 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.910630 B = 7972.947231 C = 9581.123574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.096 4.096 4 H 0.054 0.946 5 C 0.124 3.876 6 N -0.587 5.587 7 C 0.602 3.398 8 O -0.528 6.528 9 C 0.038 3.962 10 C -0.243 4.243 11 C 0.470 3.530 12 O -0.565 6.565 13 N -0.447 5.447 14 C 0.094 3.906 15 O 0.016 5.984 16 C 0.108 3.892 17 C -0.142 4.142 18 C 0.177 3.823 19 H 0.055 0.945 20 N -0.731 5.731 21 C -0.226 4.226 22 H 0.081 0.919 23 C -0.076 4.076 24 N -0.971 5.971 25 Si 0.964 3.036 26 H -0.262 1.262 27 H -0.300 1.300 28 H -0.300 1.300 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.199 0.801 37 H 0.129 0.871 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.043 0.957 43 H 0.073 0.927 44 H 0.370 0.630 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.861 10.592 15.159 18.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.116 4.116 4 H 0.072 0.928 5 C 0.003 3.997 6 N -0.317 5.317 7 C 0.387 3.613 8 O -0.406 6.406 9 C -0.020 4.020 10 C -0.268 4.268 11 C 0.269 3.731 12 O -0.450 6.450 13 N -0.209 5.209 14 C -0.040 4.040 15 O 0.005 5.995 16 C -0.014 4.014 17 C -0.183 4.183 18 C 0.069 3.931 19 H 0.073 0.927 20 N -0.370 5.370 21 C -0.358 4.358 22 H 0.099 0.901 23 C -0.268 4.268 24 N -0.622 5.622 25 Si 0.794 3.206 26 H -0.186 1.186 27 H -0.228 1.228 28 H -0.228 1.228 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.216 0.784 37 H 0.147 0.853 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.062 0.938 43 H 0.091 0.909 44 H 0.202 0.798 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.949 11.016 15.337 18.984 hybrid contribution 0.609 -0.497 -1.200 1.434 sum -1.339 10.519 14.138 17.673 Atomic orbital electron populations 1.21799 0.94910 1.01903 1.01872 1.21351 0.96006 0.94968 1.02157 1.21662 0.95875 0.96689 0.97337 0.92764 1.21914 0.99922 0.80143 0.97737 1.48179 1.09480 1.06454 1.67622 1.16886 0.85628 0.80934 0.77902 1.90859 1.13115 1.83769 1.52836 1.23163 0.81285 0.96600 1.00975 1.23435 1.02856 0.90844 1.09689 1.18437 0.83592 0.89031 0.82054 1.90937 1.84263 1.13176 1.56577 1.46530 1.11431 0.96492 1.66443 1.22597 0.75409 1.00690 1.05346 1.84286 1.24403 1.11943 1.78821 1.22282 0.78035 1.02427 0.98683 1.22496 1.01787 0.97813 0.96191 1.20458 0.92393 0.91062 0.89224 0.92659 1.42601 1.15477 1.64871 1.14009 1.19639 0.92551 1.25391 0.98230 0.90127 1.25448 1.01329 1.03343 0.96683 1.69822 1.36975 1.50214 1.05203 0.85203 0.80512 0.77289 0.77564 1.18641 1.22780 1.22788 0.91283 0.93722 0.92318 0.93591 0.91257 0.88386 0.88264 0.78431 0.85296 0.88492 0.88028 0.87971 0.87946 0.93766 0.90861 0.79800 0.94408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.67 71.98 0.70 -2.81 16 2 C -0.11 -3.04 5.31 30.59 0.16 -2.88 16 3 C -0.10 -2.70 1.92 -10.72 -0.02 -2.72 16 4 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 5 C 0.12 2.76 5.34 86.36 0.46 3.22 16 6 N -0.59 -12.88 2.97 -821.94 -2.44 -15.32 16 7 C 0.60 14.39 7.70 86.89 0.67 15.05 16 8 O -0.53 -15.29 16.33 -3.72 -0.06 -15.35 16 9 C 0.04 0.82 6.88 24.47 0.17 0.99 16 10 C -0.24 -5.54 10.94 22.84 0.25 -5.29 16 11 C 0.47 11.71 8.02 85.25 0.68 12.39 16 12 O -0.56 -17.94 17.92 -5.25 -0.09 -18.04 16 13 N -0.45 -8.15 3.68 -492.74 -1.82 -9.97 16 14 C 0.09 0.89 11.18 127.77 1.43 2.32 16 15 O 0.02 0.28 7.55 70.48 0.53 0.81 16 16 C 0.11 2.13 6.14 86.36 0.53 2.66 16 17 C -0.14 -4.00 5.66 30.67 0.17 -3.83 16 18 C 0.18 5.81 2.19 45.02 0.10 5.91 16 19 H 0.06 1.78 8.08 -2.39 -0.02 1.76 16 20 N -0.73 -32.91 4.33 -322.82 -1.40 -34.31 16 21 C -0.23 -11.38 9.93 84.04 0.83 -10.55 16 22 H 0.08 3.83 7.83 -2.91 -0.02 3.81 16 23 C -0.08 -4.11 5.50 84.86 0.47 -3.65 16 24 N -0.97 -57.20 13.06 21.65 0.28 -56.91 16 25 Si 0.96 43.86 29.55 68.60 2.03 45.88 16 26 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 27 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 28 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 29 H 0.07 1.38 6.70 -2.39 -0.02 1.37 16 30 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.69 7.22 -2.39 -0.02 1.67 16 33 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.10 2.22 5.72 -2.39 -0.01 2.21 16 35 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.20 4.11 8.06 -2.91 -0.02 4.08 16 37 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 40 H 0.10 1.77 4.24 -16.03 -0.07 1.70 16 41 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 43 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 44 H 0.37 18.70 7.51 -92.71 -0.70 18.01 16 45 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -69.99 366.34 3.89 -66.10 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.26 Total: 26.29 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 6.60 Total: 10.81 kcal Atomic # 7 Polarization: -111.13 SS G_CDS: -5.37 Total: -116.51 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: 0.38 Total: -32.57 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -69.99 3.89 -66.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037826924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.762 kcal (2) G-P(sol) polarization free energy of solvation -69.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds