Wall clock time and date at job start Tue Mar 31 2020 13:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46782 * 2 1 4 4 H 1.09004 * 109.50198 * 54.93256 * 3 2 1 5 5 C 1.53192 * 109.52381 * 294.85253 * 3 2 1 6 6 N 1.46931 * 108.77460 * 185.40228 * 5 3 2 7 7 C 1.34776 * 120.62855 * 233.62764 * 6 5 3 8 8 O 1.21629 * 119.99976 * 354.83834 * 7 6 5 9 9 C 1.47368 * 120.00070 * 174.83719 * 7 6 5 10 10 C 1.35921 * 126.41217 * 173.53567 * 9 7 6 11 11 O 1.34481 * 107.08653 * 180.02562 * 10 9 7 12 12 C 1.34208 * 108.24982 * 359.97438 * 11 10 9 13 13 O 1.35354 * 125.44815 * 180.02562 * 12 11 10 14 14 C 1.42900 * 116.99813 * 359.97438 * 13 12 11 15 15 N 1.30553 * 109.10521 * 359.73077 * 12 11 10 16 16 C 1.46920 * 118.74092 * 53.60703 * 6 5 3 17 17 C 1.53187 * 108.77692 * 306.39225 * 16 6 5 18 18 C 1.53039 * 109.31529 * 54.63261 * 17 16 6 19 19 H 1.09008 * 109.44595 * 58.65120 * 18 17 16 20 20 N 1.46497 * 109.46527 * 178.61495 * 18 17 16 21 21 C 1.36936 * 120.00099 * 275.07414 * 20 18 17 22 22 H 1.08004 * 120.00352 * 359.97438 * 21 20 18 23 23 C 1.38809 * 120.00077 * 179.97438 * 21 20 18 24 24 N 1.31625 * 120.00256 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00194 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46842 * 89.99863 * 25 23 21 27 27 H 1.48497 * 109.46931 * 330.00213 * 25 23 21 28 28 H 1.48500 * 109.47180 * 209.99881 * 25 23 21 29 29 H 1.09002 * 109.47305 * 300.00052 * 1 2 3 30 30 H 1.09003 * 109.47279 * 60.00503 * 1 2 3 31 31 H 1.09000 * 109.47351 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47078 * 239.99817 * 2 1 3 33 33 H 1.09003 * 109.47279 * 119.99497 * 2 1 3 34 34 H 1.09003 * 109.58497 * 305.18202 * 5 3 2 35 35 H 1.08993 * 109.58731 * 65.60974 * 5 3 2 36 36 H 1.08005 * 126.45374 * 0.03734 * 10 9 7 37 37 H 1.09004 * 109.47150 * 299.99498 * 14 13 12 38 38 H 1.08992 * 109.47326 * 59.99998 * 14 13 12 39 39 H 1.09007 * 109.46599 * 179.97438 * 14 13 12 40 40 H 1.09003 * 109.59174 * 66.17921 * 16 6 5 41 41 H 1.08997 * 109.58674 * 186.46216 * 16 6 5 42 42 H 1.09003 * 109.49613 * 294.68189 * 17 16 6 43 43 H 1.09005 * 109.50323 * 174.58967 * 17 16 6 44 44 H 0.97001 * 120.00104 * 95.06413 * 20 18 17 45 45 H 0.97006 * 119.99335 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6046 1.9824 0.8410 5 6 1.6384 2.1275 -1.3101 6 7 2.2449 3.4651 -1.3496 7 6 1.4854 4.5574 -1.5657 8 8 0.3031 4.4346 -1.8233 9 6 2.0875 5.9003 -1.4897 10 6 1.4801 7.0756 -1.8017 11 8 2.3800 8.0529 -1.5930 12 6 3.5190 7.4902 -1.1603 13 8 4.6533 8.1574 -0.8438 14 6 4.6304 9.5792 -0.9845 15 7 3.3558 6.1969 -1.0875 16 6 3.6950 3.5896 -1.1487 17 6 4.0734 2.8883 0.1596 18 6 3.5651 1.4452 0.1258 19 1 4.0008 0.9268 -0.7285 20 7 3.9541 0.7615 1.3617 21 6 5.1922 0.1858 1.4652 22 1 5.8820 0.2354 0.6356 23 6 5.5610 -0.4615 2.6365 24 7 4.7207 -0.5216 3.6478 25 14 7.2498 -1.2474 2.7774 26 1 8.2143 -0.2547 3.3157 27 1 7.6997 -1.6976 1.4358 28 1 7.1778 -2.4144 3.6929 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.9965 1.5389 -2.1548 35 1 0.5532 2.2167 -1.3582 36 1 0.4659 7.2009 -2.1513 37 1 4.4181 9.8383 -2.0218 38 1 3.8562 9.9957 -0.3402 39 1 5.5995 9.9882 -0.6986 40 1 4.2208 3.1202 -1.9802 41 1 3.9670 4.6435 -1.0927 42 1 3.6190 3.4145 0.9991 43 1 5.1576 2.8896 0.2728 44 1 3.3346 0.7167 2.1068 45 1 3.8436 -0.1137 3.5744 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037888495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:05 Heat of formation + Delta-G solvation = -18.684822 kcal Electronic energy + Delta-G solvation = -28237.656817 eV Core-core repulsion = 24258.618989 eV Total energy + Delta-G solvation = -3979.037828 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.76456 -40.04737 -39.14266 -37.78972 -35.48018 -34.60629 -33.80943 -31.72412 -30.46110 -29.28806 -28.59704 -27.84544 -25.54767 -23.81987 -23.71843 -22.70236 -22.49695 -20.85795 -20.46964 -19.47161 -18.37291 -17.83481 -17.30883 -17.20271 -16.76166 -15.95947 -15.62910 -15.55635 -14.97073 -14.90741 -14.24335 -14.05665 -13.73171 -13.52677 -13.41420 -13.33416 -13.08770 -12.75266 -12.69278 -12.36489 -12.20670 -12.00371 -11.63389 -11.36293 -11.26097 -10.92878 -10.73704 -10.49267 -10.37477 -10.30308 -10.17892 -10.00077 -9.78030 -9.62022 -9.10172 -9.01338 -8.77607 -8.40929 -6.94468 -6.03630 -3.02624 0.86813 1.58581 1.77973 2.42283 3.02637 3.20812 3.55211 3.60053 3.73836 4.15931 4.44254 4.54569 4.61305 4.71703 4.75918 4.95028 5.08523 5.18622 5.21693 5.33084 5.37981 5.52823 5.61181 5.66044 5.66949 5.73841 5.86126 5.92425 6.09585 6.13596 6.17364 6.29047 6.37977 6.40951 6.49579 6.52397 6.66557 6.81334 6.85366 6.98047 7.13171 7.20854 7.54096 7.87984 8.12254 8.82041 9.29730 10.16142 10.32138 11.44857 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012206 B = 0.003672 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.368029 B = 7622.828561 C = 9550.032270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.068 0.932 5 C 0.119 3.881 6 N -0.583 5.583 7 C 0.598 3.402 8 O -0.546 6.546 9 C -0.038 4.038 10 C 0.000 4.000 11 O -0.226 6.226 12 C 0.382 3.618 13 O -0.242 6.242 14 C 0.023 3.977 15 N -0.447 5.447 16 C 0.064 3.936 17 C -0.142 4.142 18 C 0.187 3.813 19 H 0.047 0.953 20 N -0.732 5.732 21 C -0.325 4.325 22 H 0.064 0.936 23 C -0.046 4.046 24 N -0.946 5.946 25 Si 1.081 2.919 26 H -0.297 1.297 27 H -0.295 1.295 28 H -0.289 1.289 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.236 0.764 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.120 0.880 40 H 0.058 0.942 41 H 0.145 0.855 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.366 0.634 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.480 19.008 -13.216 23.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.086 0.914 5 C -0.003 4.003 6 N -0.313 5.313 7 C 0.385 3.615 8 O -0.425 6.425 9 C -0.156 4.156 10 C -0.072 4.072 11 O -0.117 6.117 12 C 0.137 3.863 13 O -0.150 6.150 14 C -0.071 4.071 15 N -0.192 5.192 16 C -0.059 4.059 17 C -0.183 4.183 18 C 0.076 3.924 19 H 0.065 0.935 20 N -0.374 5.374 21 C -0.457 4.457 22 H 0.082 0.918 23 C -0.243 4.243 24 N -0.592 5.592 25 Si 0.912 3.088 26 H -0.224 1.224 27 H -0.222 1.222 28 H -0.215 1.215 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.252 0.748 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.138 0.862 40 H 0.076 0.924 41 H 0.162 0.838 42 H 0.074 0.926 43 H 0.092 0.908 44 H 0.199 0.801 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.190 17.662 -12.237 21.891 hybrid contribution -1.499 1.611 -0.956 2.399 sum -5.689 19.273 -13.192 24.038 Atomic orbital electron populations 1.21849 0.96701 1.01105 1.01360 1.21435 0.94430 0.95668 1.03337 1.21798 0.97917 0.96136 0.96676 0.91360 1.21815 0.99300 0.81273 0.97951 1.47991 1.09444 1.05958 1.67860 1.16738 0.85229 0.82020 0.77524 1.90800 1.14987 1.86000 1.50712 1.21741 0.90374 0.96140 1.07334 1.24902 0.95026 0.83918 1.03403 1.84382 1.21494 1.39393 1.66443 1.23833 0.81099 0.86444 0.94948 1.86431 1.23511 1.23032 1.82011 1.23317 1.05543 0.75314 1.02974 1.70952 1.16778 1.07070 1.24449 1.23034 0.77780 1.06962 0.98076 1.22527 1.01995 0.98194 0.95560 1.20185 0.90492 0.90970 0.90704 0.93462 1.42418 1.16418 1.65772 1.12789 1.20054 0.92440 1.31591 1.01568 0.91822 1.25697 1.05777 1.00418 0.92438 1.70847 1.08347 1.47878 1.32135 0.83219 0.74350 0.76347 0.74870 1.22443 1.22226 1.21526 0.93032 0.93065 0.93096 0.92313 0.90224 0.91371 0.89081 0.74772 0.91407 0.91377 0.86220 0.92387 0.83836 0.92620 0.90776 0.80068 0.93392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.67 37.16 0.36 -1.80 16 2 C -0.11 -1.85 5.31 -26.73 -0.14 -1.99 16 3 C -0.11 -1.83 1.92 -90.50 -0.17 -2.00 16 4 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 5 C 0.12 1.85 5.31 -3.71 -0.02 1.83 16 6 N -0.58 -9.27 2.97 -174.06 -0.52 -9.78 16 7 C 0.60 9.37 7.68 -12.55 -0.10 9.28 16 8 O -0.55 -9.33 16.33 5.25 0.09 -9.24 16 9 C -0.04 -0.51 6.72 -82.98 -0.56 -1.06 16 10 C 0.00 0.00 11.94 29.90 0.36 0.35 16 11 O -0.23 -2.18 10.20 -17.75 -0.18 -2.36 16 12 C 0.38 4.37 8.98 52.22 0.47 4.84 16 13 O -0.24 -2.36 10.55 -40.98 -0.43 -2.79 16 14 C 0.02 0.11 10.73 101.05 1.08 1.19 16 15 N -0.45 -6.21 7.77 -11.71 -0.09 -6.30 16 16 C 0.06 1.03 6.33 -3.72 -0.02 1.00 16 17 C -0.14 -2.69 5.66 -26.61 -0.15 -2.84 16 18 C 0.19 3.78 2.19 -67.89 -0.15 3.63 16 19 H 0.05 1.00 8.08 -51.92 -0.42 0.58 16 20 N -0.73 -18.20 4.33 -53.38 -0.23 -18.43 16 21 C -0.33 -9.09 9.93 -15.06 -0.15 -9.24 16 22 H 0.06 1.76 7.83 -52.48 -0.41 1.35 16 23 C -0.05 -1.33 5.50 -17.43 -0.10 -1.43 16 24 N -0.95 -29.40 13.70 55.49 0.76 -28.64 16 25 Si 1.08 26.22 29.92 -169.99 -5.09 21.13 16 26 H -0.30 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.30 -6.77 7.11 56.52 0.40 -6.36 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.66 6.70 -51.93 -0.35 0.32 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.57 7.21 -51.93 -0.37 1.20 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 1.41 5.76 -51.93 -0.30 1.11 16 36 H 0.24 1.55 8.06 -52.48 -0.42 1.13 16 37 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.12 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.15 2.28 3.64 -77.95 -0.28 1.99 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 44 H 0.37 9.52 6.34 -40.82 -0.26 9.26 16 45 H 0.25 7.82 6.77 -40.82 -0.28 7.54 16 LS Contribution 364.93 15.07 5.50 5.50 Total: -1.00 -34.07 364.93 -6.02 -40.09 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.54 Total: 9.06 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 0.71 Total: 1.76 kcal Atomic # 7 Polarization: -63.07 SS G_CDS: -0.08 Total: -63.15 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.53 Total: -14.40 kcal Atomic # 14 Polarization: 26.22 SS G_CDS: -5.09 Total: 21.13 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.07 -6.02 -40.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037888495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.410 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds