Wall clock time and date at job start Tue Mar 31 2020 13:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47328 * 2 1 4 4 H 1.08993 * 109.50184 * 54.93132 * 3 2 1 5 5 C 1.52758 * 109.56029 * 294.96278 * 3 2 1 6 6 N 1.46930 * 109.00927 * 185.55488 * 5 3 2 7 7 C 1.34775 * 120.63325 * 233.58594 * 6 5 3 8 8 O 1.21621 * 119.99797 * 6.90703 * 7 6 5 9 9 C 1.47370 * 120.00163 * 186.90739 * 7 6 5 10 10 C 1.35916 * 126.40983 * 187.22080 * 9 7 6 11 11 O 1.34488 * 107.08054 * 180.02562 * 10 9 7 12 12 C 1.34196 * 108.25395 * 0.02562 * 11 10 9 13 13 O 1.35347 * 125.44891 * 180.26335 * 12 11 10 14 14 C 1.42899 * 116.99962 * 359.68996 * 13 12 11 15 15 N 1.30551 * 109.10343 * 359.97438 * 12 11 10 16 16 C 1.46931 * 118.73899 * 53.30740 * 6 5 3 17 17 C 1.53192 * 108.77291 * 306.64872 * 16 6 5 18 18 C 1.53041 * 109.49621 * 174.99901 * 3 2 1 19 19 H 1.09000 * 109.45249 * 301.32843 * 18 3 2 20 20 N 1.46498 * 109.46195 * 61.29573 * 18 3 2 21 21 C 1.36942 * 119.99876 * 205.06991 * 20 18 3 22 22 H 1.08000 * 119.99999 * 359.97438 * 21 20 18 23 23 C 1.38809 * 119.99767 * 179.97438 * 21 20 18 24 24 N 1.31620 * 119.99874 * 179.97438 * 23 21 20 25 25 Si 1.86806 * 120.00335 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47013 * 89.99864 * 25 23 21 27 27 H 1.48495 * 109.46886 * 209.99937 * 25 23 21 28 28 H 1.48503 * 109.46710 * 330.00214 * 25 23 21 29 29 H 1.09005 * 109.47484 * 300.00645 * 1 2 3 30 30 H 1.09006 * 109.46982 * 60.00135 * 1 2 3 31 31 H 1.08997 * 109.47439 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47567 * 239.99169 * 2 1 3 33 33 H 1.09006 * 109.46982 * 119.99865 * 2 1 3 34 34 H 1.09000 * 109.51543 * 65.67148 * 5 3 2 35 35 H 1.09001 * 109.43303 * 305.38316 * 5 3 2 36 36 H 1.07992 * 126.45839 * 0.02562 * 10 9 7 37 37 H 1.09003 * 109.47044 * 179.97438 * 14 13 12 38 38 H 1.08998 * 109.47531 * 300.00061 * 14 13 12 39 39 H 1.09006 * 109.47035 * 60.00481 * 14 13 12 40 40 H 1.08998 * 109.58335 * 66.42953 * 16 6 5 41 41 H 1.08997 * 109.59035 * 186.85927 * 16 6 5 42 42 H 1.09008 * 109.49454 * 174.58737 * 17 16 6 43 43 H 1.09006 * 109.49977 * 294.64602 * 17 16 6 44 44 H 0.97002 * 120.00250 * 25.06151 * 20 18 3 45 45 H 0.96999 * 120.00021 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 0.8409 5 6 1.6377 2.1272 -1.3050 6 7 2.2452 3.4642 -1.3509 7 6 1.4858 4.5564 -1.5675 8 8 0.2741 4.4575 -1.6020 9 6 2.1237 5.8705 -1.7626 10 6 1.4899 7.0695 -1.8524 11 8 2.4392 8.0059 -2.0279 12 6 3.6339 7.3950 -2.0463 13 8 4.8288 8.0121 -2.1985 14 6 4.8099 9.4320 -2.3589 15 7 3.4597 6.1109 -1.8877 16 6 3.6954 3.5886 -1.1500 17 6 4.0737 2.8880 0.1588 18 6 3.5652 1.4449 0.1258 19 1 3.8544 0.9368 1.0457 20 7 4.1507 0.7474 -1.0217 21 6 5.3879 0.1703 -0.9138 22 1 5.9322 0.2299 0.0171 23 6 5.9424 -0.4911 -2.0010 24 7 7.1318 -1.0452 -1.8974 25 14 5.0007 -0.5947 -3.6110 26 1 5.3449 0.5728 -4.4617 27 1 5.3667 -1.8479 -4.3186 28 1 3.5421 -0.5913 -3.3323 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 0.5524 2.2172 -1.3494 35 1 1.9923 1.5357 -2.1491 36 1 0.4249 7.2384 -1.7939 37 1 5.8304 9.7987 -2.4702 38 1 4.2320 9.6898 -3.2463 39 1 4.3531 9.8906 -1.4818 40 1 4.2210 3.1187 -1.9812 41 1 3.9672 4.6426 -1.0921 42 1 5.1579 2.8893 0.2718 43 1 3.6198 3.4151 0.9980 44 1 3.6620 0.6941 -1.8580 45 1 7.5195 -1.5071 -2.6572 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037888496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:08 Heat of formation + Delta-G solvation = -14.164619 kcal Electronic energy + Delta-G solvation = -28689.692971 eV Core-core repulsion = 24710.851153 eV Total energy + Delta-G solvation = -3978.841818 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.68763 -40.06268 -39.08870 -37.88902 -35.36723 -34.25258 -33.78273 -31.68929 -30.39132 -29.73291 -28.78767 -27.78976 -25.82151 -23.93461 -23.55707 -22.93753 -22.57069 -20.79817 -20.43028 -18.91197 -18.00873 -17.85399 -17.74218 -17.09350 -16.67926 -15.86883 -15.54297 -15.52083 -15.07243 -14.60350 -14.40429 -14.07617 -13.73345 -13.59898 -13.35928 -13.25089 -13.03313 -12.66802 -12.43026 -12.39684 -12.30300 -12.00703 -11.59835 -11.33118 -11.21764 -11.15931 -10.87999 -10.81360 -10.47067 -10.31086 -10.23510 -10.14412 -9.74589 -9.62822 -9.48286 -8.95785 -8.82643 -8.27014 -7.20362 -5.72905 -3.07226 0.93322 1.65930 1.86850 2.49350 3.10729 3.27898 3.39389 3.42800 3.48394 4.25152 4.49586 4.59126 4.62549 4.67849 4.82515 4.99848 5.09509 5.16797 5.25483 5.31726 5.42144 5.46852 5.57930 5.62402 5.71718 5.77059 5.82564 5.90173 6.01070 6.11932 6.22655 6.26677 6.32760 6.40154 6.49038 6.55804 6.68937 6.75342 6.78725 6.89315 7.02300 7.29321 7.63972 8.04166 8.20353 8.46423 9.25102 9.97951 10.18098 11.45761 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011887 B = 0.004389 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.853243 B = 6377.901793 C = 7857.601458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.072 0.928 5 C 0.116 3.884 6 N -0.582 5.582 7 C 0.597 3.403 8 O -0.549 6.549 9 C -0.037 4.037 10 C -0.003 4.003 11 O -0.227 6.227 12 C 0.378 3.622 13 O -0.242 6.242 14 C 0.024 3.976 15 N -0.445 5.445 16 C 0.087 3.913 17 C -0.148 4.148 18 C 0.183 3.817 19 H 0.059 0.941 20 N -0.743 5.743 21 C -0.237 4.237 22 H 0.090 0.910 23 C 0.007 3.993 24 N -0.935 5.935 25 Si 0.877 3.123 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.278 1.278 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.235 0.765 37 H 0.119 0.881 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.126 0.874 42 H 0.079 0.921 43 H 0.048 0.952 44 H 0.360 0.640 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.136 19.873 1.524 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.090 0.910 5 C -0.006 4.006 6 N -0.311 5.311 7 C 0.384 3.616 8 O -0.428 6.428 9 C -0.155 4.155 10 C -0.075 4.075 11 O -0.118 6.118 12 C 0.133 3.867 13 O -0.150 6.150 14 C -0.071 4.071 15 N -0.191 5.191 16 C -0.035 4.035 17 C -0.189 4.189 18 C 0.074 3.926 19 H 0.077 0.923 20 N -0.387 5.387 21 C -0.367 4.367 22 H 0.108 0.892 23 C -0.189 4.189 24 N -0.583 5.583 25 Si 0.707 3.293 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.204 1.204 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.251 0.749 37 H 0.137 0.863 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.143 0.857 42 H 0.097 0.903 43 H 0.067 0.933 44 H 0.193 0.807 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.778 19.287 1.572 22.150 hybrid contribution -0.880 0.576 -1.341 1.704 sum -11.658 19.863 0.231 23.033 Atomic orbital electron populations 1.21859 0.96648 1.01127 1.01470 1.21435 0.94444 0.95684 1.03360 1.21715 0.97625 0.96154 0.97096 0.90966 1.21679 0.99043 0.81497 0.98380 1.48002 1.09727 1.05817 1.67600 1.16730 0.85645 0.81854 0.77376 1.90787 1.12838 1.85313 1.53861 1.21742 0.88329 0.96083 1.09395 1.24882 0.94019 0.84997 1.03603 1.84371 1.16295 1.39963 1.71217 1.23784 0.79419 0.86120 0.97337 1.86430 1.16508 1.24273 1.87748 1.23302 1.05712 0.75566 1.02533 1.71267 1.15851 1.08677 1.23269 1.22594 0.77400 1.04651 0.98821 1.22496 1.02193 0.98283 0.95894 1.20219 0.89287 0.91023 0.92112 0.92329 1.42823 1.19700 1.65718 1.10425 1.19062 0.91942 1.26472 0.99192 0.89173 1.24607 0.96449 1.00400 0.97432 1.69690 1.16319 1.41487 1.30796 0.86675 0.79629 0.77366 0.85591 1.21141 1.21821 1.20419 0.93109 0.92864 0.93079 0.91081 0.91492 0.89161 0.91364 0.74866 0.86271 0.91457 0.91443 0.90634 0.85694 0.90278 0.93331 0.80655 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.67 37.15 0.36 -1.63 16 2 C -0.11 -1.72 5.19 -26.74 -0.14 -1.86 16 3 C -0.11 -1.71 2.12 -90.72 -0.19 -1.90 16 4 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 5 C 0.12 1.93 5.02 -3.93 -0.02 1.91 16 6 N -0.58 -9.85 2.98 -174.31 -0.52 -10.37 16 7 C 0.60 9.77 7.67 -12.54 -0.10 9.67 16 8 O -0.55 -9.65 16.32 5.26 0.09 -9.56 16 9 C -0.04 -0.52 6.66 -82.99 -0.55 -1.08 16 10 C 0.00 -0.03 11.94 29.90 0.36 0.33 16 11 O -0.23 -2.33 10.20 -17.74 -0.18 -2.51 16 12 C 0.38 4.60 8.98 52.22 0.47 5.07 16 13 O -0.24 -2.52 10.55 -40.96 -0.43 -2.95 16 14 C 0.02 0.12 10.73 101.05 1.08 1.21 16 15 N -0.44 -6.56 7.88 -11.72 -0.09 -6.65 16 16 C 0.09 1.53 5.84 -3.71 -0.02 1.51 16 17 C -0.15 -2.60 5.78 -26.61 -0.15 -2.75 16 18 C 0.18 3.45 2.53 -67.89 -0.17 3.27 16 19 H 0.06 1.14 8.08 -51.93 -0.42 0.73 16 20 N -0.74 -16.83 3.52 -53.38 -0.19 -17.02 16 21 C -0.24 -6.46 10.41 -15.06 -0.16 -6.62 16 22 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 23 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 24 N -0.93 -29.16 13.97 55.49 0.78 -28.39 16 25 Si 0.88 22.21 27.74 -169.99 -4.71 17.49 16 26 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 28 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.69 6.70 -51.93 -0.35 0.34 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.25 7.70 -51.93 -0.40 0.85 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 1.45 5.71 -51.93 -0.30 1.16 16 35 H 0.07 1.23 6.64 -51.93 -0.34 0.88 16 36 H 0.24 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 1.52 7.74 -51.93 -0.40 1.12 16 41 H 0.13 2.13 4.12 -59.69 -0.25 1.88 16 42 H 0.08 1.50 8.14 -51.92 -0.42 1.07 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.36 8.22 3.82 -40.82 -0.16 8.06 16 45 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 360.15 15.07 5.43 5.43 Total: -1.00 -33.33 360.15 -5.60 -38.93 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -6.43 Total: 8.37 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 0.67 Total: 7.23 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -0.02 Total: -62.43 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.53 Total: -15.02 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.33 -5.60 -38.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037888496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.770 kcal (2) G-P(sol) polarization free energy of solvation -33.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds