Wall clock time and date at job start Tue Mar 31 2020 13:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47328 * 2 1 4 4 H 1.08993 * 109.50184 * 54.93132 * 3 2 1 5 5 C 1.52758 * 109.56029 * 294.96278 * 3 2 1 6 6 N 1.46930 * 109.00927 * 185.55488 * 5 3 2 7 7 C 1.34775 * 120.63325 * 233.58594 * 6 5 3 8 8 O 1.21621 * 119.99797 * 6.90703 * 7 6 5 9 9 C 1.47370 * 120.00163 * 186.90739 * 7 6 5 10 10 C 1.35916 * 126.40983 * 187.22080 * 9 7 6 11 11 O 1.34488 * 107.08054 * 180.02562 * 10 9 7 12 12 C 1.34196 * 108.25395 * 0.02562 * 11 10 9 13 13 O 1.35347 * 125.44891 * 180.26335 * 12 11 10 14 14 C 1.42899 * 116.99962 * 359.68996 * 13 12 11 15 15 N 1.30551 * 109.10343 * 359.97438 * 12 11 10 16 16 C 1.46931 * 118.73899 * 53.30740 * 6 5 3 17 17 C 1.53192 * 108.77291 * 306.64872 * 16 6 5 18 18 C 1.53041 * 109.49621 * 174.99901 * 3 2 1 19 19 H 1.09000 * 109.45249 * 301.32843 * 18 3 2 20 20 N 1.46498 * 109.46195 * 61.29573 * 18 3 2 21 21 C 1.36942 * 119.99876 * 205.06991 * 20 18 3 22 22 H 1.08000 * 119.99999 * 359.97438 * 21 20 18 23 23 C 1.38809 * 119.99767 * 179.97438 * 21 20 18 24 24 N 1.31620 * 119.99874 * 179.97438 * 23 21 20 25 25 Si 1.86806 * 120.00335 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47013 * 89.99864 * 25 23 21 27 27 H 1.48495 * 109.46886 * 209.99937 * 25 23 21 28 28 H 1.48503 * 109.46710 * 330.00214 * 25 23 21 29 29 H 1.09005 * 109.47484 * 300.00645 * 1 2 3 30 30 H 1.09006 * 109.46982 * 60.00135 * 1 2 3 31 31 H 1.08997 * 109.47439 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47567 * 239.99169 * 2 1 3 33 33 H 1.09006 * 109.46982 * 119.99865 * 2 1 3 34 34 H 1.09000 * 109.51543 * 65.67148 * 5 3 2 35 35 H 1.09001 * 109.43303 * 305.38316 * 5 3 2 36 36 H 1.07992 * 126.45839 * 0.02562 * 10 9 7 37 37 H 1.09003 * 109.47044 * 179.97438 * 14 13 12 38 38 H 1.08998 * 109.47531 * 300.00061 * 14 13 12 39 39 H 1.09006 * 109.47035 * 60.00481 * 14 13 12 40 40 H 1.08998 * 109.58335 * 66.42953 * 16 6 5 41 41 H 1.08997 * 109.59035 * 186.85927 * 16 6 5 42 42 H 1.09008 * 109.49454 * 174.58737 * 17 16 6 43 43 H 1.09006 * 109.49977 * 294.64602 * 17 16 6 44 44 H 0.97002 * 120.00250 * 25.06151 * 20 18 3 45 45 H 0.96999 * 120.00021 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 0.8409 5 6 1.6377 2.1272 -1.3050 6 7 2.2452 3.4642 -1.3509 7 6 1.4858 4.5564 -1.5675 8 8 0.2741 4.4575 -1.6020 9 6 2.1237 5.8705 -1.7626 10 6 1.4899 7.0695 -1.8524 11 8 2.4392 8.0059 -2.0279 12 6 3.6339 7.3950 -2.0463 13 8 4.8288 8.0121 -2.1985 14 6 4.8099 9.4320 -2.3589 15 7 3.4597 6.1109 -1.8877 16 6 3.6954 3.5886 -1.1500 17 6 4.0737 2.8880 0.1588 18 6 3.5652 1.4449 0.1258 19 1 3.8544 0.9368 1.0457 20 7 4.1507 0.7474 -1.0217 21 6 5.3879 0.1703 -0.9138 22 1 5.9322 0.2299 0.0171 23 6 5.9424 -0.4911 -2.0010 24 7 7.1318 -1.0452 -1.8974 25 14 5.0007 -0.5947 -3.6110 26 1 5.3449 0.5728 -4.4617 27 1 5.3667 -1.8479 -4.3186 28 1 3.5421 -0.5913 -3.3323 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 0.5524 2.2172 -1.3494 35 1 1.9923 1.5357 -2.1491 36 1 0.4249 7.2384 -1.7939 37 1 5.8304 9.7987 -2.4702 38 1 4.2320 9.6898 -3.2463 39 1 4.3531 9.8906 -1.4818 40 1 4.2210 3.1187 -1.9812 41 1 3.9672 4.6426 -1.0921 42 1 5.1579 2.8893 0.2718 43 1 3.6198 3.4151 0.9980 44 1 3.6620 0.6941 -1.8580 45 1 7.5195 -1.5071 -2.6572 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037888496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:07 Heat of formation + Delta-G solvation = -38.533650 kcal Electronic energy + Delta-G solvation = -28690.749691 eV Core-core repulsion = 24710.851153 eV Total energy + Delta-G solvation = -3979.898538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.58715 -41.37500 -39.84206 -39.25468 -36.43294 -35.77871 -35.23123 -33.57371 -31.48607 -31.29603 -30.08650 -28.31635 -27.13691 -25.38611 -25.02653 -24.42064 -23.47873 -22.14983 -21.45775 -20.22535 -19.84338 -19.16710 -18.61660 -18.32991 -17.46525 -17.11724 -16.73436 -16.40870 -16.32773 -16.02587 -15.85376 -15.57589 -15.04227 -14.92776 -14.69096 -14.59958 -14.35125 -14.24155 -13.76421 -13.39503 -13.16570 -13.08095 -12.97190 -12.89736 -12.68027 -12.52214 -12.36574 -12.08811 -12.02527 -11.87064 -11.64493 -11.53301 -11.49653 -11.21965 -11.06232 -10.65694 -9.89732 -9.59262 -9.22052 -7.98237 -5.28476 0.01514 0.84856 0.87853 1.34895 1.37378 1.43324 1.68247 1.94963 2.13285 2.48950 3.17900 3.34326 3.61456 3.72537 3.75322 3.95096 4.03154 4.04510 4.20309 4.25665 4.28131 4.35509 4.38241 4.45221 4.46621 4.58035 4.61013 4.65394 4.68780 4.82153 4.96156 5.05204 5.07031 5.14504 5.24660 5.26125 5.30152 5.40419 5.50016 5.62490 5.72606 5.84084 6.25032 6.27688 6.46863 6.96343 7.12544 7.89488 8.08039 9.23858 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011887 B = 0.004389 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.853243 B = 6377.901793 C = 7857.601458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.094 4.094 4 H 0.091 0.909 5 C 0.118 3.882 6 N -0.588 5.588 7 C 0.600 3.400 8 O -0.563 6.563 9 C -0.078 4.078 10 C 0.037 3.963 11 O -0.212 6.212 12 C 0.384 3.616 13 O -0.258 6.258 14 C 0.014 3.986 15 N -0.484 5.484 16 C 0.098 3.902 17 C -0.140 4.140 18 C 0.177 3.823 19 H 0.051 0.949 20 N -0.741 5.741 21 C -0.212 4.212 22 H 0.062 0.938 23 C -0.058 4.058 24 N -0.984 5.984 25 Si 0.937 3.063 26 H -0.287 1.287 27 H -0.297 1.297 28 H -0.255 1.255 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.051 0.949 36 H 0.272 0.728 37 H 0.142 0.858 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.043 0.957 41 H 0.136 0.864 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.361 0.639 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.789 22.332 1.519 26.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.114 4.114 4 H 0.109 0.891 5 C -0.004 4.004 6 N -0.318 5.318 7 C 0.388 3.612 8 O -0.443 6.443 9 C -0.195 4.195 10 C -0.036 4.036 11 O -0.103 6.103 12 C 0.138 3.862 13 O -0.166 6.166 14 C -0.080 4.080 15 N -0.231 5.231 16 C -0.024 4.024 17 C -0.181 4.181 18 C 0.069 3.931 19 H 0.069 0.931 20 N -0.385 5.385 21 C -0.343 4.343 22 H 0.080 0.920 23 C -0.249 4.249 24 N -0.635 5.635 25 Si 0.766 3.234 26 H -0.214 1.214 27 H -0.224 1.224 28 H -0.180 1.180 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.119 0.881 35 H 0.070 0.930 36 H 0.287 0.713 37 H 0.160 0.840 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.153 0.847 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.195 0.805 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.480 21.794 1.588 25.675 hybrid contribution -0.041 -0.005 -1.259 1.260 sum -13.522 21.789 0.329 25.646 Atomic orbital electron populations 1.21794 0.94261 1.02127 1.02192 1.21397 0.96514 0.94738 1.02082 1.21619 0.95091 0.96974 0.97690 0.89059 1.21636 0.99516 0.81451 0.97788 1.47990 1.09264 1.06243 1.68306 1.16948 0.85460 0.82357 0.76387 1.90766 1.13284 1.85763 1.54507 1.21516 0.88708 0.96152 1.13156 1.25559 0.95057 0.83663 0.99272 1.84426 1.15783 1.39374 1.70725 1.23699 0.80244 0.85808 0.96449 1.86449 1.15792 1.26923 1.87486 1.23708 1.07691 0.72949 1.03636 1.71000 1.16592 1.10474 1.25006 1.22398 0.77861 1.04934 0.97193 1.22373 1.01052 0.97583 0.97082 1.20438 0.91375 0.91088 0.90232 0.93107 1.42780 1.18237 1.65699 1.11755 1.19021 0.92955 1.24691 0.97661 0.92038 1.25260 0.97462 1.01289 1.00883 1.69852 1.18384 1.43602 1.31705 0.85681 0.79662 0.76709 0.81388 1.21356 1.22353 1.17973 0.91720 0.92732 0.92036 0.93446 0.91695 0.88111 0.93027 0.71281 0.83961 0.90390 0.90175 0.93837 0.84686 0.92253 0.90924 0.80490 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.67 71.98 0.70 -2.73 16 2 C -0.11 -3.23 5.19 30.59 0.16 -3.07 16 3 C -0.09 -2.89 2.12 -10.86 -0.02 -2.92 16 4 H 0.09 2.52 8.14 -2.39 -0.02 2.51 16 5 C 0.12 3.78 5.02 86.22 0.43 4.22 16 6 N -0.59 -19.33 2.98 -823.65 -2.45 -21.78 16 7 C 0.60 18.63 7.67 86.65 0.66 19.29 16 8 O -0.56 -18.51 16.32 -4.10 -0.07 -18.57 16 9 C -0.08 -2.07 6.66 40.31 0.27 -1.80 16 10 C 0.04 0.66 11.94 67.28 0.80 1.47 16 11 O -0.21 -3.70 10.20 18.95 0.19 -3.51 16 12 C 0.38 8.64 8.98 130.43 1.17 9.81 16 13 O -0.26 -4.97 10.55 -64.15 -0.68 -5.65 16 14 C 0.01 0.11 10.73 113.37 1.22 1.32 16 15 N -0.48 -13.78 7.88 -419.41 -3.30 -17.08 16 16 C 0.10 3.46 5.84 86.36 0.50 3.97 16 17 C -0.14 -4.92 5.78 30.67 0.18 -4.74 16 18 C 0.18 6.62 2.53 45.02 0.11 6.74 16 19 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 20 N -0.74 -33.96 3.52 -322.81 -1.14 -35.10 16 21 C -0.21 -11.91 10.41 84.03 0.87 -11.03 16 22 H 0.06 3.77 8.06 -2.91 -0.02 3.74 16 23 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 24 N -0.98 -63.51 13.97 21.65 0.30 -63.21 16 25 Si 0.94 46.78 27.74 68.60 1.90 48.68 16 26 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 27 H -0.30 -14.99 7.11 99.48 0.71 -14.29 16 28 H -0.25 -11.60 6.52 99.48 0.65 -10.95 16 29 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.05 1.26 6.70 -2.38 -0.02 1.25 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.05 1.62 7.70 -2.39 -0.02 1.60 16 33 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.10 3.04 5.71 -2.39 -0.01 3.02 16 35 H 0.05 1.82 6.64 -2.39 -0.02 1.80 16 36 H 0.27 2.60 8.06 -2.91 -0.02 2.57 16 37 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 40 H 0.04 1.79 7.74 -2.39 -0.02 1.77 16 41 H 0.14 4.59 4.12 -17.71 -0.07 4.52 16 42 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 43 H 0.07 2.20 8.14 -2.38 -0.02 2.19 16 44 H 0.36 16.48 3.82 -92.71 -0.35 16.13 16 45 H 0.25 15.82 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -74.10 360.15 2.83 -71.27 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: 0.54 Total: 27.37 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 7.53 Total: 17.58 kcal Atomic # 7 Polarization: -130.58 SS G_CDS: -6.59 Total: -137.18 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.55 Total: -27.73 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.90 Total: 48.68 kcal Total: -74.10 2.83 -71.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037888496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.734 kcal (2) G-P(sol) polarization free energy of solvation -74.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds