Wall clock time and date at job start Tue Mar 31 2020 13:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47534 * 2 1 4 4 H 1.09005 * 109.51843 * 305.07891 * 3 2 1 5 5 C 1.53193 * 109.49516 * 65.15472 * 3 2 1 6 6 N 1.46926 * 108.77170 * 174.58937 * 5 3 2 7 7 C 1.34776 * 120.63240 * 126.37658 * 6 5 3 8 8 O 1.21621 * 119.99605 * 352.82051 * 7 6 5 9 9 C 1.47364 * 120.00365 * 172.82532 * 7 6 5 10 10 C 1.35915 * 126.41369 * 172.73427 * 9 7 6 11 11 O 1.34494 * 107.08947 * 179.97438 * 10 9 7 12 12 C 1.34207 * 108.24315 * 0.02562 * 11 10 9 13 13 O 1.35352 * 125.44292 * 179.97438 * 12 11 10 14 14 C 1.42905 * 116.99831 * 359.97438 * 13 12 11 15 15 N 1.30551 * 109.10724 * 359.72257 * 12 11 10 16 16 C 1.46924 * 118.74164 * 306.39476 * 6 5 3 17 17 C 1.53194 * 108.77785 * 53.60907 * 16 6 5 18 18 C 1.53034 * 109.50166 * 184.99861 * 3 2 1 19 19 H 1.09003 * 109.45786 * 298.69095 * 18 3 2 20 20 N 1.46504 * 109.46016 * 58.66087 * 18 3 2 21 21 C 1.36937 * 120.00052 * 205.00069 * 20 18 3 22 22 H 1.07996 * 120.00116 * 0.02562 * 21 20 18 23 23 C 1.38809 * 119.99890 * 179.97438 * 21 20 18 24 24 N 1.31619 * 119.99877 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00192 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47088 * 270.00167 * 25 23 21 27 27 H 1.48500 * 109.47182 * 30.00094 * 25 23 21 28 28 H 1.48504 * 109.47247 * 149.99730 * 25 23 21 29 29 H 1.08994 * 109.47293 * 299.99996 * 1 2 3 30 30 H 1.09001 * 109.47003 * 60.00486 * 1 2 3 31 31 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47094 * 239.99465 * 2 1 3 33 33 H 1.09004 * 109.46929 * 120.00281 * 2 1 3 34 34 H 1.09001 * 109.59175 * 294.37894 * 5 3 2 35 35 H 1.08996 * 109.58265 * 54.66711 * 5 3 2 36 36 H 1.08000 * 126.45509 * 0.03919 * 10 9 7 37 37 H 1.09003 * 109.46898 * 179.97438 * 14 13 12 38 38 H 1.08997 * 109.46821 * 299.99566 * 14 13 12 39 39 H 1.09003 * 109.47100 * 60.00033 * 14 13 12 40 40 H 1.09006 * 109.58918 * 173.39554 * 16 6 5 41 41 H 1.08998 * 109.58809 * 293.67838 * 16 6 5 42 42 H 1.09000 * 109.49922 * 185.41479 * 17 16 6 43 43 H 1.08998 * 109.49595 * 65.31396 * 17 16 6 44 44 H 0.97002 * 120.00142 * 24.99700 * 20 18 3 45 45 H 0.97003 * 120.00063 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6048 1.9827 -0.8408 5 6 1.6385 2.1267 1.3104 6 7 2.2451 3.4643 1.3506 7 6 1.4857 4.5565 1.5672 8 8 0.2740 4.4576 1.6014 9 6 2.1235 5.8706 1.7623 10 6 1.4899 7.0697 1.8512 11 8 2.4391 8.0062 2.0271 12 6 3.6338 7.3952 2.0456 13 8 4.8284 8.0118 2.2027 14 6 4.8096 9.4319 2.3613 15 7 3.4592 6.1104 1.8930 16 6 3.6952 3.5887 1.1498 17 6 4.0738 2.8881 -0.1589 18 6 3.5653 1.4450 -0.1257 19 1 4.0008 0.9262 0.7283 20 7 3.9542 0.7619 -1.3620 21 6 5.1924 0.1862 -1.4657 22 1 5.8819 0.2352 -0.6360 23 6 5.5607 -0.4615 -2.6369 24 7 6.7505 -1.0153 -2.7364 25 14 4.3677 -0.5470 -4.0718 26 1 3.5346 -1.7703 -3.9507 27 1 3.4914 0.6518 -4.0592 28 1 5.1286 -0.5905 -5.3463 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.5532 2.2161 1.3585 35 1 1.9943 1.5364 2.1548 36 1 0.4248 7.2386 1.7928 37 1 5.8296 9.7980 2.4779 38 1 4.3572 9.8897 1.4816 39 1 4.2276 9.6910 3.2458 40 1 3.9670 4.6428 1.0918 41 1 4.2209 3.1212 1.9823 42 1 5.1579 2.8893 -0.2719 43 1 3.6194 3.4147 -0.9981 44 1 3.3347 0.7174 -2.1071 45 1 7.0078 -1.4682 -3.5547 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037888497.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:11 Heat of formation + Delta-G solvation = -16.925215 kcal Electronic energy + Delta-G solvation = -28186.426671 eV Core-core repulsion = 24207.465145 eV Total energy + Delta-G solvation = -3978.961526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.75809 -40.07465 -39.14505 -37.83421 -35.46015 -34.57484 -33.77643 -31.71644 -30.47389 -29.79412 -28.90224 -27.84881 -25.77267 -23.99644 -23.69986 -22.65693 -22.19682 -20.76468 -20.47592 -19.65599 -18.37010 -17.85183 -17.59123 -17.16460 -16.74913 -15.94906 -15.62415 -15.58062 -15.08523 -14.78857 -14.31296 -13.99523 -13.89572 -13.54480 -13.39867 -13.23862 -12.84671 -12.73383 -12.62807 -12.46276 -12.31439 -12.10677 -11.73876 -11.38522 -11.30163 -11.11610 -10.95557 -10.72590 -10.48474 -10.40081 -10.27262 -10.18561 -9.81946 -9.63348 -9.52740 -9.02379 -8.83447 -8.43950 -7.21004 -5.73691 -3.08330 0.86457 1.59205 1.78394 2.42284 2.99652 3.19841 3.39824 3.43291 3.47695 4.15216 4.43897 4.54185 4.61081 4.62147 4.76014 4.94793 5.05642 5.10205 5.18834 5.25985 5.36404 5.43691 5.55352 5.59562 5.62752 5.69089 5.81788 5.86299 6.05161 6.08315 6.16871 6.19763 6.31858 6.36194 6.42202 6.46903 6.59111 6.71145 6.77189 6.91263 7.05933 7.20105 7.50976 8.03218 8.10611 8.45711 9.24406 9.97236 10.17674 11.44829 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013860 B = 0.003555 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.679705 B = 7874.927559 C = 9349.296786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.069 0.931 5 C 0.119 3.881 6 N -0.585 5.585 7 C 0.599 3.401 8 O -0.545 6.545 9 C -0.039 4.039 10 C -0.001 4.001 11 O -0.226 6.226 12 C 0.380 3.620 13 O -0.243 6.243 14 C 0.024 3.976 15 N -0.447 5.447 16 C 0.082 3.918 17 C -0.149 4.149 18 C 0.187 3.813 19 H 0.057 0.943 20 N -0.746 5.746 21 C -0.238 4.238 22 H 0.090 0.910 23 C 0.004 3.996 24 N -0.935 5.935 25 Si 0.881 3.119 26 H -0.284 1.284 27 H -0.278 1.278 28 H -0.292 1.292 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.236 0.764 37 H 0.119 0.881 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.129 0.871 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.054 0.946 44 H 0.360 0.640 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.158 19.869 11.995 25.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.088 0.912 5 C -0.004 4.004 6 N -0.315 5.315 7 C 0.386 3.614 8 O -0.424 6.424 9 C -0.157 4.157 10 C -0.073 4.073 11 O -0.118 6.118 12 C 0.135 3.865 13 O -0.150 6.150 14 C -0.071 4.071 15 N -0.194 5.194 16 C -0.041 4.041 17 C -0.190 4.190 18 C 0.077 3.923 19 H 0.075 0.925 20 N -0.387 5.387 21 C -0.368 4.368 22 H 0.108 0.892 23 C -0.191 4.191 24 N -0.583 5.583 25 Si 0.712 3.288 26 H -0.211 1.211 27 H -0.204 1.204 28 H -0.219 1.219 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.252 0.748 37 H 0.138 0.862 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.146 0.854 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.193 0.807 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.790 19.281 12.065 24.762 hybrid contribution -1.083 0.650 -1.197 1.740 sum -10.872 19.931 10.868 25.171 Atomic orbital electron populations 1.21856 0.96645 1.01141 1.01465 1.21462 0.94513 0.95694 1.03435 1.21822 0.97773 0.96211 0.96974 0.91239 1.21804 0.99431 0.81215 0.97901 1.47986 1.09522 1.05992 1.67980 1.16723 0.85652 0.81835 0.77193 1.90800 1.12831 1.85254 1.53521 1.21720 0.88340 0.96094 1.09551 1.24909 0.94074 0.84985 1.03296 1.84384 1.16276 1.39950 1.71156 1.23756 0.79455 0.86086 0.97242 1.86421 1.16567 1.24344 1.87681 1.23312 1.05744 0.75474 1.02596 1.71201 1.15862 1.08756 1.23537 1.22706 0.77798 1.05487 0.98107 1.22616 1.02491 0.98255 0.95608 1.20209 0.90584 0.90972 0.90527 0.92509 1.42787 1.16530 1.66398 1.13024 1.19070 0.90648 1.26684 1.00427 0.89173 1.24642 0.96424 1.00424 0.97616 1.69699 1.19338 1.41750 1.27521 0.86600 0.81003 0.77790 0.83456 1.21106 1.20387 1.21875 0.92911 0.93076 0.93065 0.90496 0.91879 0.88987 0.91130 0.74827 0.86235 0.91375 0.91442 0.85360 0.91644 0.90149 0.92698 0.80696 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.67 37.16 0.36 -1.64 16 2 C -0.11 -1.74 5.31 -26.73 -0.14 -1.89 16 3 C -0.11 -1.74 1.92 -90.50 -0.17 -1.91 16 4 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 5 C 0.12 1.73 5.34 -3.71 -0.02 1.71 16 6 N -0.58 -8.84 2.97 -174.06 -0.52 -9.36 16 7 C 0.60 9.03 7.67 -12.55 -0.10 8.94 16 8 O -0.55 -9.04 16.32 5.26 0.09 -8.95 16 9 C -0.04 -0.50 6.66 -82.99 -0.55 -1.05 16 10 C 0.00 -0.01 11.94 29.90 0.36 0.35 16 11 O -0.23 -2.14 10.20 -17.78 -0.18 -2.32 16 12 C 0.38 4.20 8.98 52.22 0.47 4.67 16 13 O -0.24 -2.26 10.55 -40.98 -0.43 -2.70 16 14 C 0.02 0.10 10.73 101.05 1.08 1.19 16 15 N -0.45 -5.96 7.88 -11.72 -0.09 -6.05 16 16 C 0.08 1.25 6.09 -3.71 -0.02 1.22 16 17 C -0.15 -2.65 5.66 -26.61 -0.15 -2.80 16 18 C 0.19 3.55 2.19 -67.89 -0.15 3.40 16 19 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 20 N -0.75 -17.29 4.13 -53.39 -0.22 -17.51 16 21 C -0.24 -6.60 10.41 -15.06 -0.16 -6.76 16 22 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 23 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 24 N -0.94 -29.30 13.97 55.49 0.78 -28.53 16 25 Si 0.88 22.21 27.73 -169.99 -4.71 17.49 16 26 H -0.28 -7.11 7.11 56.52 0.40 -6.70 16 27 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 28 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 29 H 0.05 0.63 6.70 -51.93 -0.35 0.29 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.37 7.22 -51.93 -0.37 1.00 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.34 5.72 -51.93 -0.30 1.04 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.24 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.12 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.13 1.96 4.13 -59.25 -0.24 1.71 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.36 8.37 5.37 -40.82 -0.22 8.15 16 45 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 363.79 15.07 5.48 5.48 Total: -1.00 -33.78 363.79 -5.67 -39.45 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -6.57 Total: 7.53 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 0.71 Total: 5.46 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: -0.06 Total: -61.44 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.53 Total: -13.97 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.78 -5.67 -39.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037888497.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.525 kcal (2) G-P(sol) polarization free energy of solvation -33.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds