Wall clock time and date at job start Tue Mar 31 2020 13:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47534 * 2 1 4 4 H 1.09005 * 109.51843 * 305.07891 * 3 2 1 5 5 C 1.53193 * 109.49516 * 65.15472 * 3 2 1 6 6 N 1.46926 * 108.77170 * 174.58937 * 5 3 2 7 7 C 1.34776 * 120.63240 * 126.37658 * 6 5 3 8 8 O 1.21621 * 119.99605 * 352.82051 * 7 6 5 9 9 C 1.47364 * 120.00365 * 172.82532 * 7 6 5 10 10 C 1.35915 * 126.41369 * 172.73427 * 9 7 6 11 11 O 1.34494 * 107.08947 * 179.97438 * 10 9 7 12 12 C 1.34207 * 108.24315 * 0.02562 * 11 10 9 13 13 O 1.35352 * 125.44292 * 179.97438 * 12 11 10 14 14 C 1.42905 * 116.99831 * 359.97438 * 13 12 11 15 15 N 1.30551 * 109.10724 * 359.72257 * 12 11 10 16 16 C 1.46924 * 118.74164 * 306.39476 * 6 5 3 17 17 C 1.53194 * 108.77785 * 53.60907 * 16 6 5 18 18 C 1.53034 * 109.50166 * 184.99861 * 3 2 1 19 19 H 1.09003 * 109.45786 * 298.69095 * 18 3 2 20 20 N 1.46504 * 109.46016 * 58.66087 * 18 3 2 21 21 C 1.36937 * 120.00052 * 205.00069 * 20 18 3 22 22 H 1.07996 * 120.00116 * 0.02562 * 21 20 18 23 23 C 1.38809 * 119.99890 * 179.97438 * 21 20 18 24 24 N 1.31619 * 119.99877 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00192 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47088 * 270.00167 * 25 23 21 27 27 H 1.48500 * 109.47182 * 30.00094 * 25 23 21 28 28 H 1.48504 * 109.47247 * 149.99730 * 25 23 21 29 29 H 1.08994 * 109.47293 * 299.99996 * 1 2 3 30 30 H 1.09001 * 109.47003 * 60.00486 * 1 2 3 31 31 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47094 * 239.99465 * 2 1 3 33 33 H 1.09004 * 109.46929 * 120.00281 * 2 1 3 34 34 H 1.09001 * 109.59175 * 294.37894 * 5 3 2 35 35 H 1.08996 * 109.58265 * 54.66711 * 5 3 2 36 36 H 1.08000 * 126.45509 * 0.03919 * 10 9 7 37 37 H 1.09003 * 109.46898 * 179.97438 * 14 13 12 38 38 H 1.08997 * 109.46821 * 299.99566 * 14 13 12 39 39 H 1.09003 * 109.47100 * 60.00033 * 14 13 12 40 40 H 1.09006 * 109.58918 * 173.39554 * 16 6 5 41 41 H 1.08998 * 109.58809 * 293.67838 * 16 6 5 42 42 H 1.09000 * 109.49922 * 185.41479 * 17 16 6 43 43 H 1.08998 * 109.49595 * 65.31396 * 17 16 6 44 44 H 0.97002 * 120.00142 * 24.99700 * 20 18 3 45 45 H 0.97003 * 120.00063 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6048 1.9827 -0.8408 5 6 1.6385 2.1267 1.3104 6 7 2.2451 3.4643 1.3506 7 6 1.4857 4.5565 1.5672 8 8 0.2740 4.4576 1.6014 9 6 2.1235 5.8706 1.7623 10 6 1.4899 7.0697 1.8512 11 8 2.4391 8.0062 2.0271 12 6 3.6338 7.3952 2.0456 13 8 4.8284 8.0118 2.2027 14 6 4.8096 9.4319 2.3613 15 7 3.4592 6.1104 1.8930 16 6 3.6952 3.5887 1.1498 17 6 4.0738 2.8881 -0.1589 18 6 3.5653 1.4450 -0.1257 19 1 4.0008 0.9262 0.7283 20 7 3.9542 0.7619 -1.3620 21 6 5.1924 0.1862 -1.4657 22 1 5.8819 0.2352 -0.6360 23 6 5.5607 -0.4615 -2.6369 24 7 6.7505 -1.0153 -2.7364 25 14 4.3677 -0.5470 -4.0718 26 1 3.5346 -1.7703 -3.9507 27 1 3.4914 0.6518 -4.0592 28 1 5.1286 -0.5905 -5.3463 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.5532 2.2161 1.3585 35 1 1.9943 1.5364 2.1548 36 1 0.4248 7.2386 1.7928 37 1 5.8296 9.7980 2.4779 38 1 4.3572 9.8897 1.4816 39 1 4.2276 9.6910 3.2458 40 1 3.9670 4.6428 1.0918 41 1 4.2209 3.1212 1.9823 42 1 5.1579 2.8893 -0.2719 43 1 3.6194 3.4147 -0.9981 44 1 3.3347 0.7174 -2.1071 45 1 7.0078 -1.4682 -3.5547 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037888497.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:10 Heat of formation + Delta-G solvation = -41.833637 kcal Electronic energy + Delta-G solvation = -28187.506781 eV Core-core repulsion = 24207.465145 eV Total energy + Delta-G solvation = -3980.041636 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.57602 -41.28113 -39.81642 -39.16985 -36.52533 -36.01097 -35.17300 -33.62132 -31.56029 -31.25450 -30.11054 -28.30772 -27.14538 -25.42557 -24.89718 -23.76254 -23.45923 -22.19612 -21.52579 -20.99339 -19.61743 -19.21288 -18.60759 -18.34299 -17.46435 -17.12024 -16.79740 -16.39429 -16.30815 -15.99407 -15.91431 -15.25999 -15.23201 -14.72261 -14.67519 -14.55115 -14.44912 -14.08576 -13.92410 -13.43574 -13.18245 -13.07309 -12.96851 -12.88669 -12.75293 -12.54574 -12.25533 -12.11247 -12.07628 -11.84172 -11.65744 -11.55301 -11.51110 -11.14858 -11.12267 -10.70944 -9.90748 -9.60209 -9.24897 -7.99433 -5.31345 0.02252 0.85899 0.88774 1.37809 1.39812 1.46841 1.68396 1.94420 2.14864 2.49576 3.16992 3.32400 3.55149 3.71645 3.75884 3.92922 4.05371 4.09338 4.21467 4.26372 4.29239 4.31409 4.36746 4.44341 4.50343 4.58940 4.63404 4.66583 4.74515 4.79354 4.84786 4.99506 5.05199 5.11270 5.21267 5.28882 5.34117 5.47441 5.48919 5.62025 5.72541 5.81295 6.24429 6.25032 6.46289 6.97087 7.10483 7.86968 8.06480 9.22360 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013860 B = 0.003555 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.679705 B = 7874.927559 C = 9349.296786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.096 4.096 4 H 0.063 0.937 5 C 0.123 3.877 6 N -0.591 5.591 7 C 0.601 3.399 8 O -0.563 6.563 9 C -0.077 4.077 10 C 0.034 3.966 11 O -0.214 6.214 12 C 0.383 3.617 13 O -0.257 6.257 14 C 0.014 3.986 15 N -0.480 5.480 16 C 0.095 3.905 17 C -0.139 4.139 18 C 0.182 3.818 19 H 0.047 0.953 20 N -0.746 5.746 21 C -0.219 4.219 22 H 0.059 0.941 23 C -0.062 4.062 24 N -0.985 5.985 25 Si 0.948 3.052 26 H -0.278 1.278 27 H -0.258 1.258 28 H -0.298 1.298 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.269 0.731 37 H 0.143 0.857 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.136 0.864 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.048 0.952 44 H 0.363 0.637 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.578 21.994 12.588 28.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.116 4.116 4 H 0.081 0.919 5 C 0.001 3.999 6 N -0.320 5.320 7 C 0.389 3.611 8 O -0.443 6.443 9 C -0.194 4.194 10 C -0.039 4.039 11 O -0.105 6.105 12 C 0.138 3.862 13 O -0.165 6.165 14 C -0.080 4.080 15 N -0.227 5.227 16 C -0.028 4.028 17 C -0.180 4.180 18 C 0.074 3.926 19 H 0.065 0.935 20 N -0.388 5.388 21 C -0.350 4.350 22 H 0.077 0.923 23 C -0.253 4.253 24 N -0.636 5.636 25 Si 0.777 3.223 26 H -0.204 1.204 27 H -0.183 1.183 28 H -0.225 1.225 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.285 0.715 37 H 0.161 0.839 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.153 0.847 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.196 0.804 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.244 21.454 12.697 27.774 hybrid contribution -0.278 0.135 -1.252 1.290 sum -12.523 21.589 11.445 27.457 Atomic orbital electron populations 1.21795 0.94353 1.02142 1.02108 1.21421 0.96501 0.94702 1.02325 1.21682 0.94994 0.97042 0.97858 0.91859 1.21777 0.99836 0.81150 0.97112 1.47999 1.09229 1.06415 1.68403 1.16935 0.85445 0.82362 0.76341 1.90778 1.13422 1.85700 1.54397 1.21516 0.88779 0.96137 1.12976 1.25551 0.95082 0.83822 0.99419 1.84433 1.15852 1.39438 1.70728 1.23723 0.80226 0.85848 0.96438 1.86441 1.15820 1.26836 1.87416 1.23702 1.07710 0.72988 1.03573 1.70964 1.16371 1.10335 1.25048 1.22538 0.78281 1.05554 0.96419 1.22433 1.00926 0.97550 0.97082 1.20409 0.92936 0.90935 0.88324 0.93490 1.42770 1.14955 1.66520 1.14576 1.19007 0.91520 1.25377 0.99127 0.92320 1.25387 0.98245 1.01031 1.00674 1.69874 1.21704 1.43687 1.28300 0.85505 0.78875 0.78627 0.79340 1.20378 1.18292 1.22528 0.91581 0.93079 0.91944 0.93031 0.91578 0.88229 0.89975 0.71511 0.83902 0.90494 0.90247 0.84735 0.91362 0.92314 0.93331 0.80430 0.93509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.67 71.98 0.70 -2.79 16 2 C -0.11 -3.31 5.31 30.59 0.16 -3.15 16 3 C -0.10 -3.00 1.92 -10.72 -0.02 -3.02 16 4 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 5 C 0.12 3.41 5.34 86.36 0.46 3.87 16 6 N -0.59 -17.21 2.97 -822.84 -2.45 -19.66 16 7 C 0.60 17.19 7.67 86.65 0.66 17.85 16 8 O -0.56 -17.53 16.32 -4.10 -0.07 -17.60 16 9 C -0.08 -1.87 6.66 40.31 0.27 -1.60 16 10 C 0.03 0.56 11.94 67.28 0.80 1.37 16 11 O -0.21 -3.45 10.20 18.79 0.19 -3.26 16 12 C 0.38 7.84 8.98 130.43 1.17 9.01 16 13 O -0.26 -4.40 10.55 -64.20 -0.68 -5.07 16 14 C 0.01 0.09 10.73 113.37 1.22 1.31 16 15 N -0.48 -12.27 7.88 -419.39 -3.31 -15.58 16 16 C 0.09 2.88 6.09 86.36 0.53 3.40 16 17 C -0.14 -5.02 5.66 30.67 0.17 -4.84 16 18 C 0.18 6.96 2.19 45.02 0.10 7.06 16 19 H 0.05 1.89 8.08 -2.39 -0.02 1.88 16 20 N -0.75 -34.85 4.13 -322.81 -1.33 -36.18 16 21 C -0.22 -12.46 10.41 84.03 0.87 -11.59 16 22 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 23 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 24 N -0.98 -63.60 13.97 21.65 0.30 -63.30 16 25 Si 0.95 46.35 27.73 68.60 1.90 48.26 16 26 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 27 H -0.26 -11.61 6.52 99.48 0.65 -10.96 16 28 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 29 H 0.07 1.40 6.70 -2.39 -0.02 1.38 16 30 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.05 1.80 7.22 -2.39 -0.02 1.78 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 34 H 0.10 2.66 5.72 -2.39 -0.01 2.65 16 35 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 36 H 0.27 2.37 8.06 -2.91 -0.02 2.35 16 37 H 0.14 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.14 4.08 4.13 -16.84 -0.07 4.01 16 41 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.36 16.61 5.37 -92.71 -0.50 16.12 16 45 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -74.44 363.79 2.53 -71.91 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 0.40 Total: 26.81 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 7.56 Total: 13.65 kcal Atomic # 7 Polarization: -127.92 SS G_CDS: -6.78 Total: -134.71 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.55 Total: -25.93 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.90 Total: 48.26 kcal Total: -74.44 2.53 -71.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037888497.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.080 kcal (2) G-P(sol) polarization free energy of solvation -74.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds