Wall clock time and date at job start Tue Mar 31 2020 13:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47244 * 2 1 4 4 H 1.08994 * 109.49305 * 304.93346 * 3 2 1 5 5 C 1.53194 * 109.49685 * 64.99633 * 3 2 1 6 6 N 1.46924 * 108.77337 * 174.58949 * 5 3 2 7 7 C 1.34776 * 120.63139 * 126.41406 * 6 5 3 8 8 O 1.21614 * 119.99894 * 352.81875 * 7 6 5 9 9 C 1.47371 * 120.00130 * 172.82166 * 7 6 5 10 10 C 1.35906 * 126.41479 * 172.73845 * 9 7 6 11 11 O 1.34493 * 107.09000 * 180.02562 * 10 9 7 12 12 C 1.34201 * 108.24349 * 359.97438 * 11 10 9 13 13 O 1.35355 * 125.44489 * 180.02562 * 12 11 10 14 14 C 1.42900 * 117.00008 * 359.97223 * 13 12 11 15 15 N 1.30548 * 109.11132 * 359.72836 * 12 11 10 16 16 C 1.46923 * 118.73882 * 306.38947 * 6 5 3 17 17 C 1.53192 * 108.77427 * 53.60945 * 16 6 5 18 18 C 1.53037 * 109.31442 * 305.36304 * 17 16 6 19 19 H 1.09000 * 109.46089 * 181.38307 * 18 17 16 20 20 N 1.46494 * 109.46152 * 301.34517 * 18 17 16 21 21 C 1.36939 * 120.00205 * 275.06566 * 20 18 17 22 22 H 1.07992 * 120.00016 * 0.02562 * 21 20 18 23 23 C 1.38810 * 119.99806 * 179.97438 * 21 20 18 24 24 N 1.31626 * 119.99818 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 120.00485 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47353 * 89.99488 * 25 23 21 27 27 H 1.48497 * 109.47225 * 209.99729 * 25 23 21 28 28 H 1.48498 * 109.46844 * 329.99685 * 25 23 21 29 29 H 1.08996 * 109.47637 * 300.00315 * 1 2 3 30 30 H 1.08998 * 109.46769 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46588 * 60.00204 * 1 2 3 32 32 H 1.09010 * 109.46800 * 119.99734 * 2 1 3 33 33 H 1.08996 * 109.47330 * 239.99232 * 2 1 3 34 34 H 1.09000 * 109.58644 * 294.37178 * 5 3 2 35 35 H 1.08994 * 109.58868 * 54.65649 * 5 3 2 36 36 H 1.08002 * 126.46050 * 359.97438 * 10 9 7 37 37 H 1.09002 * 109.47355 * 179.97438 * 14 13 12 38 38 H 1.08994 * 109.47407 * 300.00476 * 14 13 12 39 39 H 1.09008 * 109.46717 * 60.00555 * 14 13 12 40 40 H 1.08997 * 109.58859 * 173.39712 * 16 6 5 41 41 H 1.09002 * 109.58789 * 293.82297 * 16 6 5 42 42 H 1.09003 * 109.50053 * 65.32244 * 17 16 6 43 43 H 1.09003 * 109.49651 * 185.38302 * 17 16 6 44 44 H 0.97009 * 120.00307 * 95.06833 * 20 18 17 45 45 H 0.96998 * 120.00042 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6066 1.9815 -0.8423 5 6 1.6350 2.1280 1.3088 6 7 2.2414 3.4657 1.3493 7 6 1.4815 4.5579 1.5636 8 8 0.2699 4.4590 1.5955 9 6 2.1189 5.8722 1.7592 10 6 1.4851 7.0713 1.8462 11 8 2.4340 8.0080 2.0223 12 6 3.6286 7.3970 2.0439 13 8 4.8229 8.0138 2.2032 14 6 4.8038 9.4340 2.3605 15 7 3.4543 6.1121 1.8930 16 6 3.6921 3.5899 1.1522 17 6 4.0740 2.8879 -0.1547 18 6 3.5656 1.4449 -0.1216 19 1 3.8574 0.9358 -1.0402 20 7 4.1480 0.7485 1.0282 21 6 5.3861 0.1727 0.9247 22 1 5.9334 0.2322 -0.0043 23 6 5.9380 -0.4867 2.0144 24 7 7.1283 -1.0398 1.9151 25 14 4.9917 -0.5892 3.6217 26 1 4.1497 -1.8124 3.6233 27 1 5.9480 -0.6451 4.7564 28 1 4.1252 0.6084 3.7631 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 0.5496 2.2174 1.3537 35 1 1.9884 1.5385 2.1547 36 1 0.4202 7.2403 1.7845 37 1 5.8236 9.8002 2.4791 38 1 4.3534 9.8911 1.4796 39 1 4.2199 9.6939 3.2436 40 1 3.9640 4.6438 1.0940 41 1 4.2155 3.1209 1.9854 42 1 3.6220 3.4138 -0.9958 43 1 5.1585 2.8896 -0.2651 44 1 3.6565 0.6952 1.8629 45 1 7.5139 -1.5009 2.6765 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037888498.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:14 Heat of formation + Delta-G solvation = -14.204280 kcal Electronic energy + Delta-G solvation = -28690.622761 eV Core-core repulsion = 24711.779224 eV Total energy + Delta-G solvation = -3978.843537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.68517 -40.05275 -39.08600 -37.88066 -35.36396 -34.25021 -33.77843 -31.68796 -30.38995 -29.73103 -28.77353 -27.78902 -25.82299 -23.93206 -23.55428 -22.93777 -22.56864 -20.79792 -20.42674 -18.91231 -18.00707 -17.85100 -17.73933 -17.09264 -16.67684 -15.86723 -15.54179 -15.51975 -15.07893 -14.59777 -14.39656 -14.07295 -13.73287 -13.60127 -13.36052 -13.25429 -13.03411 -12.66791 -12.42087 -12.40114 -12.30175 -12.00561 -11.58813 -11.32401 -11.21562 -11.16204 -10.88509 -10.80135 -10.47496 -10.32587 -10.23294 -10.15923 -9.72735 -9.63292 -9.48047 -8.95932 -8.82731 -8.26419 -7.20225 -5.72862 -3.07180 0.93448 1.66090 1.86873 2.49532 3.11410 3.27942 3.39863 3.42742 3.48356 4.25430 4.49654 4.59142 4.62625 4.67977 4.82549 4.99818 5.09293 5.16475 5.25504 5.31431 5.42458 5.46510 5.58555 5.61981 5.70929 5.77004 5.82857 5.90436 6.01144 6.11952 6.22558 6.26531 6.32612 6.40046 6.49087 6.55641 6.68983 6.75194 6.78322 6.89354 7.02303 7.29475 7.64396 8.04216 8.20664 8.46480 9.25144 9.97986 10.18129 11.45806 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011884 B = 0.004391 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.539338 B = 6375.740713 C = 7855.758810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.072 0.928 5 C 0.116 3.884 6 N -0.582 5.582 7 C 0.597 3.403 8 O -0.549 6.549 9 C -0.037 4.037 10 C -0.003 4.003 11 O -0.227 6.227 12 C 0.378 3.622 13 O -0.242 6.242 14 C 0.024 3.976 15 N -0.445 5.445 16 C 0.087 3.913 17 C -0.148 4.148 18 C 0.183 3.817 19 H 0.059 0.941 20 N -0.743 5.743 21 C -0.237 4.237 22 H 0.090 0.910 23 C 0.006 3.994 24 N -0.935 5.935 25 Si 0.877 3.123 26 H -0.284 1.284 27 H -0.292 1.292 28 H -0.278 1.278 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.235 0.765 37 H 0.119 0.881 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.125 0.875 41 H 0.076 0.924 42 H 0.048 0.952 43 H 0.078 0.922 44 H 0.360 0.640 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.143 19.846 -1.588 22.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.091 0.909 5 C -0.006 4.006 6 N -0.311 5.311 7 C 0.384 3.616 8 O -0.428 6.428 9 C -0.156 4.156 10 C -0.075 4.075 11 O -0.118 6.118 12 C 0.133 3.867 13 O -0.150 6.150 14 C -0.071 4.071 15 N -0.191 5.191 16 C -0.034 4.034 17 C -0.189 4.189 18 C 0.074 3.926 19 H 0.077 0.923 20 N -0.387 5.387 21 C -0.367 4.367 22 H 0.108 0.892 23 C -0.189 4.189 24 N -0.583 5.583 25 Si 0.708 3.292 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.204 1.204 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.251 0.749 37 H 0.137 0.863 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.142 0.858 41 H 0.094 0.906 42 H 0.067 0.933 43 H 0.097 0.903 44 H 0.193 0.807 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.783 19.264 -1.625 22.137 hybrid contribution -0.873 0.596 1.347 1.712 sum -11.656 19.860 -0.279 23.029 Atomic orbital electron populations 1.21861 0.96635 1.01137 1.01492 1.21435 0.94455 0.95693 1.03330 1.21796 0.97586 0.96129 0.97052 0.90924 1.21764 0.99026 0.81503 0.98326 1.47988 1.09709 1.05778 1.67627 1.16729 0.85649 0.81866 0.77370 1.90784 1.12841 1.85329 1.53862 1.21745 0.88352 0.96091 1.09364 1.24881 0.94027 0.85002 1.03593 1.84375 1.16299 1.39956 1.71221 1.23782 0.79434 0.86096 0.97364 1.86431 1.16591 1.24253 1.87690 1.23301 1.05707 0.75559 1.02544 1.71279 1.15877 1.08614 1.23282 1.22585 0.77395 1.04586 0.98861 1.22496 1.02164 0.98320 0.95902 1.20218 0.89330 0.91010 0.92089 0.92301 1.42828 1.19696 1.65802 1.10339 1.19061 0.92133 1.26288 0.99173 0.89176 1.24609 0.96444 1.00440 0.97414 1.69693 1.16334 1.41512 1.30763 0.86670 0.79490 0.77764 0.85312 1.21118 1.21831 1.20441 0.92849 0.93068 0.93100 0.91153 0.91462 0.89178 0.91343 0.74865 0.86271 0.91434 0.91471 0.85757 0.90608 0.93341 0.90302 0.80654 0.93172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.67 37.16 0.36 -1.62 16 2 C -0.11 -1.70 5.19 -26.73 -0.14 -1.84 16 3 C -0.11 -1.70 2.14 -90.50 -0.19 -1.89 16 4 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 5 C 0.12 1.93 5.03 -3.71 -0.02 1.91 16 6 N -0.58 -9.90 2.97 -174.06 -0.52 -10.42 16 7 C 0.60 9.81 7.67 -12.54 -0.10 9.72 16 8 O -0.55 -9.68 16.32 5.26 0.09 -9.59 16 9 C -0.04 -0.53 6.66 -82.98 -0.55 -1.08 16 10 C 0.00 -0.03 11.94 29.90 0.36 0.33 16 11 O -0.23 -2.34 10.20 -17.76 -0.18 -2.52 16 12 C 0.38 4.61 8.98 52.22 0.47 5.08 16 13 O -0.24 -2.53 10.55 -40.99 -0.43 -2.96 16 14 C 0.02 0.12 10.73 101.05 1.08 1.21 16 15 N -0.44 -6.59 7.89 -11.71 -0.09 -6.68 16 16 C 0.09 1.55 5.83 -3.71 -0.02 1.53 16 17 C -0.15 -2.61 5.78 -26.61 -0.15 -2.76 16 18 C 0.18 3.44 2.53 -67.89 -0.17 3.27 16 19 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 20 N -0.74 -16.83 3.52 -53.39 -0.19 -17.01 16 21 C -0.24 -6.46 10.41 -15.06 -0.16 -6.61 16 22 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 23 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 24 N -0.93 -29.17 13.97 55.49 0.78 -28.39 16 25 Si 0.88 22.20 27.74 -169.99 -4.71 17.48 16 26 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 28 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16 29 H 0.05 0.68 6.70 -51.93 -0.35 0.33 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.21 7.69 -51.92 -0.40 0.81 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 1.45 5.72 -51.93 -0.30 1.15 16 35 H 0.07 1.23 6.64 -51.93 -0.35 0.89 16 36 H 0.24 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 40 H 0.13 2.13 4.13 -59.24 -0.24 1.88 16 41 H 0.08 1.55 7.74 -51.93 -0.40 1.15 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 44 H 0.36 8.21 3.81 -40.82 -0.16 8.05 16 45 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -33.39 360.16 -5.60 -38.99 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -6.43 Total: 8.33 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 0.67 Total: 7.33 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: -0.02 Total: -62.50 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.53 Total: -15.07 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.71 Total: 17.48 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.39 -5.60 -38.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037888498.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.787 kcal (2) G-P(sol) polarization free energy of solvation -33.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds