Wall clock time and date at job start Tue Mar 31 2020 13:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47244 * 2 1 4 4 H 1.08994 * 109.49305 * 304.93346 * 3 2 1 5 5 C 1.53194 * 109.49685 * 64.99633 * 3 2 1 6 6 N 1.46924 * 108.77337 * 174.58949 * 5 3 2 7 7 C 1.34776 * 120.63139 * 126.41406 * 6 5 3 8 8 O 1.21614 * 119.99894 * 352.81875 * 7 6 5 9 9 C 1.47371 * 120.00130 * 172.82166 * 7 6 5 10 10 C 1.35906 * 126.41479 * 172.73845 * 9 7 6 11 11 O 1.34493 * 107.09000 * 180.02562 * 10 9 7 12 12 C 1.34201 * 108.24349 * 359.97438 * 11 10 9 13 13 O 1.35355 * 125.44489 * 180.02562 * 12 11 10 14 14 C 1.42900 * 117.00008 * 359.97223 * 13 12 11 15 15 N 1.30548 * 109.11132 * 359.72836 * 12 11 10 16 16 C 1.46923 * 118.73882 * 306.38947 * 6 5 3 17 17 C 1.53192 * 108.77427 * 53.60945 * 16 6 5 18 18 C 1.53037 * 109.31442 * 305.36304 * 17 16 6 19 19 H 1.09000 * 109.46089 * 181.38307 * 18 17 16 20 20 N 1.46494 * 109.46152 * 301.34517 * 18 17 16 21 21 C 1.36939 * 120.00205 * 275.06566 * 20 18 17 22 22 H 1.07992 * 120.00016 * 0.02562 * 21 20 18 23 23 C 1.38810 * 119.99806 * 179.97438 * 21 20 18 24 24 N 1.31626 * 119.99818 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 120.00485 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47353 * 89.99488 * 25 23 21 27 27 H 1.48497 * 109.47225 * 209.99729 * 25 23 21 28 28 H 1.48498 * 109.46844 * 329.99685 * 25 23 21 29 29 H 1.08996 * 109.47637 * 300.00315 * 1 2 3 30 30 H 1.08998 * 109.46769 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46588 * 60.00204 * 1 2 3 32 32 H 1.09010 * 109.46800 * 119.99734 * 2 1 3 33 33 H 1.08996 * 109.47330 * 239.99232 * 2 1 3 34 34 H 1.09000 * 109.58644 * 294.37178 * 5 3 2 35 35 H 1.08994 * 109.58868 * 54.65649 * 5 3 2 36 36 H 1.08002 * 126.46050 * 359.97438 * 10 9 7 37 37 H 1.09002 * 109.47355 * 179.97438 * 14 13 12 38 38 H 1.08994 * 109.47407 * 300.00476 * 14 13 12 39 39 H 1.09008 * 109.46717 * 60.00555 * 14 13 12 40 40 H 1.08997 * 109.58859 * 173.39712 * 16 6 5 41 41 H 1.09002 * 109.58789 * 293.82297 * 16 6 5 42 42 H 1.09003 * 109.50053 * 65.32244 * 17 16 6 43 43 H 1.09003 * 109.49651 * 185.38302 * 17 16 6 44 44 H 0.97009 * 120.00307 * 95.06833 * 20 18 17 45 45 H 0.96998 * 120.00042 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6066 1.9815 -0.8423 5 6 1.6350 2.1280 1.3088 6 7 2.2414 3.4657 1.3493 7 6 1.4815 4.5579 1.5636 8 8 0.2699 4.4590 1.5955 9 6 2.1189 5.8722 1.7592 10 6 1.4851 7.0713 1.8462 11 8 2.4340 8.0080 2.0223 12 6 3.6286 7.3970 2.0439 13 8 4.8229 8.0138 2.2032 14 6 4.8038 9.4340 2.3605 15 7 3.4543 6.1121 1.8930 16 6 3.6921 3.5899 1.1522 17 6 4.0740 2.8879 -0.1547 18 6 3.5656 1.4449 -0.1216 19 1 3.8574 0.9358 -1.0402 20 7 4.1480 0.7485 1.0282 21 6 5.3861 0.1727 0.9247 22 1 5.9334 0.2322 -0.0043 23 6 5.9380 -0.4867 2.0144 24 7 7.1283 -1.0398 1.9151 25 14 4.9917 -0.5892 3.6217 26 1 4.1497 -1.8124 3.6233 27 1 5.9480 -0.6451 4.7564 28 1 4.1252 0.6084 3.7631 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 0.5496 2.2174 1.3537 35 1 1.9884 1.5385 2.1547 36 1 0.4202 7.2403 1.7845 37 1 5.8236 9.8002 2.4791 38 1 4.3534 9.8911 1.4796 39 1 4.2199 9.6939 3.2436 40 1 3.9640 4.6438 1.0940 41 1 4.2155 3.1209 1.9854 42 1 3.6220 3.4138 -0.9958 43 1 5.1585 2.8896 -0.2651 44 1 3.6565 0.6952 1.8629 45 1 7.5139 -1.5009 2.6765 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037888498.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:13 Heat of formation + Delta-G solvation = -38.622467 kcal Electronic energy + Delta-G solvation = -28691.681613 eV Core-core repulsion = 24711.779224 eV Total energy + Delta-G solvation = -3979.902389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.58812 -41.36770 -39.84094 -39.25004 -36.43298 -35.77662 -35.22461 -33.57214 -31.48696 -31.29729 -30.07166 -28.31704 -27.13969 -25.38269 -25.02641 -24.42253 -23.47853 -22.14692 -21.45551 -20.22778 -19.83922 -19.16849 -18.61922 -18.33061 -17.46583 -17.11944 -16.74293 -16.40812 -16.32170 -16.02602 -15.84752 -15.57378 -15.04984 -14.92281 -14.69630 -14.61152 -14.35347 -14.23298 -13.75814 -13.39400 -13.15796 -13.08002 -12.95575 -12.89619 -12.66282 -12.50865 -12.39158 -12.09093 -12.05701 -11.86639 -11.63373 -11.53653 -11.50172 -11.19266 -11.07961 -10.66018 -9.89849 -9.59405 -9.21815 -7.98177 -5.28382 0.01262 0.85464 0.86770 1.35737 1.37128 1.43447 1.68237 1.95188 2.12784 2.49032 3.17706 3.34111 3.61763 3.72312 3.75119 3.95379 4.02935 4.04696 4.20210 4.25615 4.27931 4.35466 4.37906 4.45106 4.46439 4.57954 4.61214 4.65331 4.68772 4.82430 4.96430 5.05461 5.06864 5.14527 5.25147 5.25958 5.30013 5.40567 5.50164 5.62542 5.72095 5.84167 6.25053 6.27683 6.46616 6.96090 7.12620 7.89618 8.08161 9.23951 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011884 B = 0.004391 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.539338 B = 6375.740713 C = 7855.758810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.093 4.093 4 H 0.091 0.909 5 C 0.118 3.882 6 N -0.589 5.589 7 C 0.600 3.400 8 O -0.563 6.563 9 C -0.078 4.078 10 C 0.037 3.963 11 O -0.212 6.212 12 C 0.384 3.616 13 O -0.258 6.258 14 C 0.014 3.986 15 N -0.484 5.484 16 C 0.099 3.901 17 C -0.141 4.141 18 C 0.177 3.823 19 H 0.051 0.949 20 N -0.741 5.741 21 C -0.212 4.212 22 H 0.062 0.938 23 C -0.058 4.058 24 N -0.984 5.984 25 Si 0.939 3.061 26 H -0.277 1.277 27 H -0.299 1.299 28 H -0.263 1.263 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.051 0.949 36 H 0.272 0.728 37 H 0.143 0.857 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.136 0.864 41 H 0.042 0.958 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.361 0.639 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.756 22.321 -1.564 26.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C -0.113 4.113 4 H 0.110 0.890 5 C -0.004 4.004 6 N -0.318 5.318 7 C 0.388 3.612 8 O -0.443 6.443 9 C -0.196 4.196 10 C -0.035 4.035 11 O -0.103 6.103 12 C 0.138 3.862 13 O -0.166 6.166 14 C -0.080 4.080 15 N -0.231 5.231 16 C -0.023 4.023 17 C -0.181 4.181 18 C 0.068 3.932 19 H 0.069 0.931 20 N -0.385 5.385 21 C -0.343 4.343 22 H 0.080 0.920 23 C -0.249 4.249 24 N -0.636 5.636 25 Si 0.768 3.232 26 H -0.204 1.204 27 H -0.226 1.226 28 H -0.189 1.189 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.119 0.881 35 H 0.070 0.930 36 H 0.287 0.713 37 H 0.160 0.840 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.153 0.847 41 H 0.061 0.939 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.195 0.805 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.443 21.787 -1.623 25.652 hybrid contribution -0.050 0.006 1.258 1.259 sum -13.494 21.793 -0.365 25.635 Atomic orbital electron populations 1.21796 0.94269 1.02131 1.02197 1.21404 0.96509 0.94712 1.02135 1.21698 0.95024 0.96993 0.97599 0.89035 1.21726 0.99512 0.81434 0.97763 1.47984 1.09244 1.06234 1.68349 1.16951 0.85469 0.82374 0.76380 1.90763 1.13277 1.85780 1.54497 1.21518 0.88740 0.96159 1.13145 1.25559 0.95067 0.83662 0.99246 1.84430 1.15785 1.39361 1.70727 1.23697 0.80261 0.85779 0.96458 1.86451 1.15865 1.26910 1.87420 1.23708 1.07690 0.72934 1.03651 1.71012 1.16620 1.10425 1.25033 1.22383 0.77863 1.04871 0.97198 1.22374 1.01022 0.97653 0.97070 1.20440 0.91444 0.91056 0.90211 0.93054 1.42787 1.18217 1.65804 1.11666 1.19020 0.93119 1.24538 0.97661 0.92049 1.25265 0.97464 1.01325 1.00870 1.69856 1.18410 1.43635 1.31651 0.85651 0.78198 0.78419 0.80940 1.20353 1.22638 1.18862 0.92707 0.92023 0.91755 0.93358 0.91669 0.88102 0.93031 0.71270 0.83953 0.90162 0.90405 0.84732 0.93940 0.90918 0.92279 0.80485 0.93622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.67 71.98 0.70 -2.71 16 2 C -0.11 -3.21 5.19 30.59 0.16 -3.05 16 3 C -0.09 -2.87 2.14 -10.72 -0.02 -2.89 16 4 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 5 C 0.12 3.78 5.03 86.36 0.43 4.22 16 6 N -0.59 -19.47 2.97 -822.86 -2.45 -21.92 16 7 C 0.60 18.73 7.67 86.65 0.66 19.39 16 8 O -0.56 -18.58 16.32 -4.08 -0.07 -18.64 16 9 C -0.08 -2.09 6.66 40.31 0.27 -1.82 16 10 C 0.04 0.67 11.94 67.28 0.80 1.47 16 11 O -0.21 -3.71 10.20 18.86 0.19 -3.52 16 12 C 0.38 8.67 8.98 130.43 1.17 9.84 16 13 O -0.26 -4.97 10.55 -64.24 -0.68 -5.65 16 14 C 0.01 0.11 10.73 113.37 1.22 1.32 16 15 N -0.48 -13.84 7.89 -419.39 -3.31 -17.15 16 16 C 0.10 3.51 5.83 86.36 0.50 4.02 16 17 C -0.14 -4.95 5.78 30.67 0.18 -4.77 16 18 C 0.18 6.62 2.53 45.02 0.11 6.74 16 19 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16 20 N -0.74 -33.99 3.52 -322.84 -1.14 -35.13 16 21 C -0.21 -11.91 10.41 84.03 0.87 -11.04 16 22 H 0.06 3.76 8.06 -2.91 -0.02 3.74 16 23 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 24 N -0.98 -63.50 13.97 21.65 0.30 -63.19 16 25 Si 0.94 46.86 27.74 68.60 1.90 48.76 16 26 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 27 H -0.30 -15.24 7.11 99.48 0.71 -14.54 16 28 H -0.26 -12.31 6.52 99.48 0.65 -11.66 16 29 H 0.05 1.26 6.70 -2.39 -0.02 1.24 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.63 7.69 -2.38 -0.02 1.61 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 34 H 0.10 3.04 5.72 -2.39 -0.01 3.03 16 35 H 0.05 1.82 6.64 -2.39 -0.02 1.81 16 36 H 0.27 2.61 8.06 -2.91 -0.02 2.59 16 37 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.08 0.44 8.14 -2.39 -0.02 0.43 16 39 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 40 H 0.14 4.60 4.13 -16.81 -0.07 4.53 16 41 H 0.04 1.77 7.74 -2.39 -0.02 1.75 16 42 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.36 16.51 3.81 -92.70 -0.35 16.16 16 45 H 0.25 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -74.20 360.16 2.84 -71.36 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: 0.55 Total: 27.34 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 7.53 Total: 17.75 kcal Atomic # 7 Polarization: -130.80 SS G_CDS: -6.59 Total: -137.39 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.55 Total: -27.82 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.90 Total: 48.76 kcal Total: -74.20 2.84 -71.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037888498.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.738 kcal (2) G-P(sol) polarization free energy of solvation -74.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds