Wall clock time and date at job start Tue Mar 31 2020 14:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42897 * 109.47200 * 2 1 4 4 C 1.35345 * 116.99960 * 179.97438 * 3 2 1 5 5 N 1.30558 * 125.44706 * 179.97438 * 4 3 2 6 6 C 1.36333 * 108.38209 * 179.97438 * 5 4 3 7 7 C 1.47372 * 126.40952 * 179.97438 * 6 5 4 8 8 O 1.21621 * 119.99410 * 186.20529 * 7 6 5 9 9 N 1.34773 * 120.00001 * 6.19669 * 7 6 5 10 10 C 1.46927 * 120.63224 * 354.03474 * 9 7 6 11 11 C 1.53188 * 108.77650 * 126.40991 * 10 9 7 12 12 C 1.53040 * 109.31422 * 54.63177 * 11 10 9 13 13 H 1.09005 * 109.45698 * 58.64524 * 12 11 10 14 14 N 1.46506 * 109.45956 * 178.61309 * 12 11 10 15 15 C 1.36935 * 119.99977 * 275.02854 * 14 12 11 16 16 H 1.08004 * 120.00360 * 0.02562 * 15 14 12 17 17 C 1.38814 * 119.99809 * 180.02562 * 15 14 12 18 18 N 1.31615 * 119.99873 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99860 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47203 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47154 * 239.99608 * 19 17 15 22 22 H 1.48503 * 109.46863 * 119.99962 * 19 17 15 23 23 C 1.53038 * 109.52798 * 298.62980 * 12 11 10 24 24 C 1.46923 * 120.62932 * 174.05183 * 9 7 6 25 25 H 1.08995 * 109.58688 * 113.80376 * 24 9 7 26 26 C 1.52998 * 109.58834 * 353.51793 * 24 9 7 27 27 C 1.35912 * 107.17612 * 0.22494 * 6 5 4 28 28 O 1.34209 * 125.44813 * 359.97438 * 4 3 2 29 29 H 1.08998 * 109.47068 * 299.99864 * 1 2 3 30 30 H 1.08994 * 109.46765 * 60.00226 * 1 2 3 31 31 H 1.08998 * 109.47148 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47152 * 239.99386 * 2 1 3 33 33 H 1.09007 * 109.46529 * 119.99938 * 2 1 3 34 34 H 1.08997 * 109.58563 * 6.62117 * 10 9 7 35 35 H 1.08999 * 109.58480 * 246.19581 * 10 9 7 36 36 H 1.09005 * 109.50068 * 294.68029 * 11 10 9 37 37 H 1.08999 * 109.50058 * 174.58846 * 11 10 9 38 38 H 0.96998 * 119.99777 * 95.03498 * 14 12 11 39 39 H 0.97003 * 120.00536 * 0.02562 * 18 17 15 40 40 H 1.09004 * 109.49417 * 181.32116 * 23 12 11 41 41 H 1.08995 * 109.49912 * 301.41716 * 23 12 11 42 42 H 1.09005 * 109.47189 * 66.18684 * 26 24 9 43 43 H 1.08999 * 109.47620 * 186.19066 * 26 24 9 44 44 H 1.09000 * 109.47294 * 306.19448 * 26 24 9 45 45 H 1.08002 * 126.45739 * 179.76833 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3482 1.5245 0.0005 5 7 3.9595 2.6782 0.0001 6 6 5.3040 2.4523 0.0015 7 6 6.3632 3.4770 0.0011 8 8 7.5283 3.1470 -0.1114 9 7 6.0405 4.7796 0.1252 10 6 4.6343 5.2054 0.1308 11 6 4.3796 6.0492 1.3836 12 6 5.3854 7.2017 1.4308 13 1 5.2845 7.8088 0.5311 14 7 5.1235 8.0301 2.6105 15 6 4.1843 9.0249 2.5537 16 1 3.6362 9.1986 1.6394 17 6 3.9366 9.8101 3.6713 18 7 4.6041 9.5981 4.7856 19 14 2.6558 11.1677 3.5936 20 1 2.0502 11.2000 2.2381 21 1 3.3013 12.4742 3.8793 22 1 1.5971 10.9077 4.6021 23 6 6.8060 6.6379 1.5088 24 6 7.0884 5.8010 0.2571 25 1 7.0835 6.4452 -0.6221 26 6 8.4531 5.1219 0.3879 27 6 5.4847 1.1052 -0.0024 28 8 4.2631 0.5426 0.0016 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 3.9871 4.3284 0.1430 35 1 4.4294 5.8010 -0.7588 36 1 4.4969 5.4274 2.2712 37 1 3.3669 6.4512 1.3519 38 1 5.6156 7.8739 3.4317 39 1 5.2695 8.8933 4.8259 40 1 7.5206 7.4591 1.5661 41 1 6.9003 6.0105 2.3951 42 1 8.6939 4.6080 -0.5428 43 1 9.2147 5.8736 0.5954 44 1 8.4231 4.4001 1.2041 45 1 6.4309 0.5846 -0.0060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044656660.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:13 Heat of formation + Delta-G solvation = -4.732331 kcal Electronic energy + Delta-G solvation = -28016.399603 eV Core-core repulsion = 24037.966800 eV Total energy + Delta-G solvation = -3978.432803 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.74051 -40.28160 -39.28975 -37.38664 -35.45477 -34.62906 -32.64438 -32.12887 -31.98775 -29.79785 -28.91590 -26.91326 -24.91216 -24.12892 -23.62170 -23.13027 -22.63355 -21.39480 -20.38284 -19.66165 -18.43713 -17.88042 -17.24758 -17.00726 -16.69077 -16.02974 -15.89457 -15.30916 -15.15015 -14.66685 -14.11839 -14.03416 -13.76122 -13.55504 -13.38523 -13.27465 -13.21790 -13.13492 -12.83010 -12.27063 -12.18508 -12.11305 -11.79528 -11.73292 -11.42849 -11.16032 -10.82958 -10.75878 -10.58331 -10.46445 -10.05758 -9.98800 -9.73711 -9.29379 -9.07157 -8.97354 -8.79131 -8.35066 -6.96786 -6.05079 -3.04298 0.89580 1.57304 1.80835 2.40525 3.00008 3.24883 3.54739 3.61557 3.70927 4.14598 4.29154 4.30794 4.61270 4.61810 4.70351 4.73680 5.08524 5.15565 5.15647 5.22257 5.24980 5.38650 5.41005 5.51670 5.55362 5.64657 5.70840 5.77712 5.90928 6.03015 6.10079 6.17649 6.26030 6.40344 6.46000 6.49790 6.54957 6.69613 6.83813 6.99446 7.12875 7.24347 7.57914 7.87461 8.18372 8.80899 9.28639 10.15075 10.30812 11.43623 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011352 B = 0.003467 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.833177 B = 8074.641060 C =10176.190554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.244 6.244 4 C 0.385 3.615 5 N -0.449 5.449 6 C -0.039 4.039 7 C 0.598 3.402 8 O -0.538 6.538 9 N -0.579 5.579 10 C 0.062 3.938 11 C -0.143 4.143 12 C 0.182 3.818 13 H 0.048 0.952 14 N -0.736 5.736 15 C -0.327 4.327 16 H 0.065 0.935 17 C -0.047 4.047 18 N -0.947 5.947 19 Si 1.085 2.915 20 H -0.295 1.295 21 H -0.294 1.294 22 H -0.294 1.294 23 C -0.134 4.134 24 C 0.145 3.855 25 H 0.073 0.927 26 C -0.137 4.137 27 C -0.003 4.003 28 O -0.226 6.226 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.149 0.851 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.366 0.634 39 H 0.255 0.745 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.046 0.954 44 H 0.063 0.937 45 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.230 -22.787 -12.672 26.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.152 6.152 4 C 0.140 3.860 5 N -0.195 5.195 6 C -0.157 4.157 7 C 0.385 3.615 8 O -0.417 6.417 9 N -0.310 5.310 10 C -0.060 4.060 11 C -0.184 4.184 12 C 0.072 3.928 13 H 0.066 0.934 14 N -0.378 5.378 15 C -0.458 4.458 16 H 0.083 0.917 17 C -0.244 4.244 18 N -0.593 5.593 19 Si 0.916 3.084 20 H -0.221 1.221 21 H -0.221 1.221 22 H -0.221 1.221 23 C -0.173 4.173 24 C 0.043 3.957 25 H 0.091 0.909 26 C -0.195 4.195 27 C -0.075 4.075 28 O -0.118 6.118 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.165 0.835 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.199 0.801 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -3.067 -21.008 -12.057 24.416 hybrid contribution 0.983 -1.990 -0.528 2.282 sum -2.084 -22.999 -12.585 26.299 Atomic orbital electron populations 1.21819 0.91140 1.03638 1.04411 1.23071 0.96980 0.79335 1.02999 1.86420 1.08977 1.30846 1.88956 1.23779 0.83432 0.81820 0.96948 1.70921 1.04131 1.19611 1.24852 1.21914 0.90131 0.94170 1.09482 1.16794 0.85895 0.81554 0.77281 1.90858 1.17539 1.81394 1.51901 1.48065 1.08851 1.04995 1.69071 1.23101 0.81012 1.03375 0.98545 1.22546 1.01892 0.97795 0.96164 1.20164 0.90643 0.90459 0.91557 0.93442 1.42451 1.47018 1.38352 1.09985 1.20110 1.15588 1.10513 0.99618 0.91689 1.25747 1.03661 1.02571 0.92470 1.70805 1.26806 1.34465 1.27176 0.83156 0.75185 0.75554 0.74488 1.22122 1.22095 1.22099 1.22296 0.99152 0.99032 0.96867 1.21360 0.87327 0.88655 0.98394 0.90855 1.22201 0.93923 0.99208 1.04122 1.24877 0.85777 0.92720 1.04095 1.84385 1.16269 1.39156 1.71970 0.90782 0.90900 0.89464 0.90818 0.90763 0.83498 0.92199 0.92782 0.90824 0.80131 0.93346 0.90689 0.91981 0.90582 0.93557 0.91814 0.74828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 10.28 37.16 0.38 -0.29 16 2 C 0.05 0.31 6.38 37.16 0.24 0.54 16 3 O -0.24 -2.49 10.19 -40.96 -0.42 -2.91 16 4 C 0.38 4.51 8.98 52.22 0.47 4.98 16 5 N -0.45 -6.26 7.71 -11.71 -0.09 -6.35 16 6 C -0.04 -0.52 6.75 -82.98 -0.56 -1.08 16 7 C 0.60 9.15 7.49 -12.55 -0.09 9.06 16 8 O -0.54 -8.60 12.46 5.26 0.07 -8.53 16 9 N -0.58 -9.17 2.97 -166.50 -0.49 -9.67 16 10 C 0.06 1.01 6.34 -3.71 -0.02 0.98 16 11 C -0.14 -2.74 5.66 -26.61 -0.15 -2.89 16 12 C 0.18 3.77 2.73 -67.89 -0.19 3.58 16 13 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 14 N -0.74 -18.89 5.12 -53.38 -0.27 -19.17 16 15 C -0.33 -9.33 9.93 -15.06 -0.15 -9.48 16 16 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 17 C -0.05 -1.39 5.50 -17.43 -0.10 -1.49 16 18 N -0.95 -29.81 13.70 55.49 0.76 -29.05 16 19 Si 1.08 26.48 29.92 -169.99 -5.09 21.40 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 C -0.13 -2.38 4.84 -26.61 -0.13 -2.51 16 24 C 0.15 2.27 3.49 -67.60 -0.24 2.03 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 26 C -0.14 -2.00 7.62 37.16 0.28 -1.72 16 27 C 0.00 -0.03 11.94 29.90 0.36 0.33 16 28 O -0.23 -2.26 10.20 -17.78 -0.18 -2.44 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 34 H 0.15 2.36 3.60 -80.93 -0.29 2.07 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 38 H 0.37 9.75 6.63 -40.82 -0.27 9.48 16 39 H 0.26 7.94 6.78 -40.82 -0.28 7.66 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.08 1.13 6.57 -51.93 -0.34 0.79 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 1.00 6.93 -51.93 -0.36 0.64 16 45 H 0.24 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 363.67 15.07 5.48 5.48 Total: -1.00 -34.10 363.67 -6.79 -40.90 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.66 Total: 8.29 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 0.10 Total: 2.05 kcal Atomic # 7 Polarization: -64.13 SS G_CDS: -0.10 Total: -64.23 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.53 Total: -13.88 kcal Atomic # 14 Polarization: 26.48 SS G_CDS: -5.09 Total: 21.40 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.10 -6.79 -40.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044656660.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.163 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds