Wall clock time and date at job start Tue Mar 31 2020 14:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42897 * 109.47200 * 2 1 4 4 C 1.35345 * 116.99960 * 179.97438 * 3 2 1 5 5 N 1.30558 * 125.44706 * 179.97438 * 4 3 2 6 6 C 1.36333 * 108.38209 * 179.97438 * 5 4 3 7 7 C 1.47372 * 126.40952 * 179.97438 * 6 5 4 8 8 O 1.21621 * 119.99410 * 186.20529 * 7 6 5 9 9 N 1.34773 * 120.00001 * 6.19669 * 7 6 5 10 10 C 1.46927 * 120.63224 * 354.03474 * 9 7 6 11 11 C 1.53188 * 108.77650 * 126.40991 * 10 9 7 12 12 C 1.53040 * 109.31422 * 54.63177 * 11 10 9 13 13 H 1.09005 * 109.45698 * 58.64524 * 12 11 10 14 14 N 1.46506 * 109.45956 * 178.61309 * 12 11 10 15 15 C 1.36935 * 119.99977 * 275.02854 * 14 12 11 16 16 H 1.08004 * 120.00360 * 0.02562 * 15 14 12 17 17 C 1.38814 * 119.99809 * 180.02562 * 15 14 12 18 18 N 1.31615 * 119.99873 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99860 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47203 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47154 * 239.99608 * 19 17 15 22 22 H 1.48503 * 109.46863 * 119.99962 * 19 17 15 23 23 C 1.53038 * 109.52798 * 298.62980 * 12 11 10 24 24 C 1.46923 * 120.62932 * 174.05183 * 9 7 6 25 25 H 1.08995 * 109.58688 * 113.80376 * 24 9 7 26 26 C 1.52998 * 109.58834 * 353.51793 * 24 9 7 27 27 C 1.35912 * 107.17612 * 0.22494 * 6 5 4 28 28 O 1.34209 * 125.44813 * 359.97438 * 4 3 2 29 29 H 1.08998 * 109.47068 * 299.99864 * 1 2 3 30 30 H 1.08994 * 109.46765 * 60.00226 * 1 2 3 31 31 H 1.08998 * 109.47148 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47152 * 239.99386 * 2 1 3 33 33 H 1.09007 * 109.46529 * 119.99938 * 2 1 3 34 34 H 1.08997 * 109.58563 * 6.62117 * 10 9 7 35 35 H 1.08999 * 109.58480 * 246.19581 * 10 9 7 36 36 H 1.09005 * 109.50068 * 294.68029 * 11 10 9 37 37 H 1.08999 * 109.50058 * 174.58846 * 11 10 9 38 38 H 0.96998 * 119.99777 * 95.03498 * 14 12 11 39 39 H 0.97003 * 120.00536 * 0.02562 * 18 17 15 40 40 H 1.09004 * 109.49417 * 181.32116 * 23 12 11 41 41 H 1.08995 * 109.49912 * 301.41716 * 23 12 11 42 42 H 1.09005 * 109.47189 * 66.18684 * 26 24 9 43 43 H 1.08999 * 109.47620 * 186.19066 * 26 24 9 44 44 H 1.09000 * 109.47294 * 306.19448 * 26 24 9 45 45 H 1.08002 * 126.45739 * 179.76833 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3482 1.5245 0.0005 5 7 3.9595 2.6782 0.0001 6 6 5.3040 2.4523 0.0015 7 6 6.3632 3.4770 0.0011 8 8 7.5283 3.1470 -0.1114 9 7 6.0405 4.7796 0.1252 10 6 4.6343 5.2054 0.1308 11 6 4.3796 6.0492 1.3836 12 6 5.3854 7.2017 1.4308 13 1 5.2845 7.8088 0.5311 14 7 5.1235 8.0301 2.6105 15 6 4.1843 9.0249 2.5537 16 1 3.6362 9.1986 1.6394 17 6 3.9366 9.8101 3.6713 18 7 4.6041 9.5981 4.7856 19 14 2.6558 11.1677 3.5936 20 1 2.0502 11.2000 2.2381 21 1 3.3013 12.4742 3.8793 22 1 1.5971 10.9077 4.6021 23 6 6.8060 6.6379 1.5088 24 6 7.0884 5.8010 0.2571 25 1 7.0835 6.4452 -0.6221 26 6 8.4531 5.1219 0.3879 27 6 5.4847 1.1052 -0.0024 28 8 4.2631 0.5426 0.0016 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 3.9871 4.3284 0.1430 35 1 4.4294 5.8010 -0.7588 36 1 4.4969 5.4274 2.2712 37 1 3.3669 6.4512 1.3519 38 1 5.6156 7.8739 3.4317 39 1 5.2695 8.8933 4.8259 40 1 7.5206 7.4591 1.5661 41 1 6.9003 6.0105 2.3951 42 1 8.6939 4.6080 -0.5428 43 1 9.2147 5.8736 0.5954 44 1 8.4231 4.4001 1.2041 45 1 6.4309 0.5846 -0.0060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044656660.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:12 Heat of formation + Delta-G solvation = -29.198193 kcal Electronic energy + Delta-G solvation = -28017.460523 eV Core-core repulsion = 24037.966800 eV Total energy + Delta-G solvation = -3979.493722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.61454 -41.51579 -40.00721 -38.84170 -36.56328 -36.27486 -33.90152 -33.68930 -32.79947 -30.92684 -30.49901 -28.35041 -26.09340 -25.53719 -24.79731 -24.27907 -23.82056 -22.48289 -21.76069 -20.87787 -19.53477 -19.27062 -18.67814 -18.12257 -17.51610 -17.19673 -16.88739 -16.58322 -16.22173 -16.05543 -15.85514 -15.38579 -15.25771 -14.91893 -14.73161 -14.42201 -14.15036 -13.94208 -13.60705 -13.55678 -13.41086 -13.19061 -12.93362 -12.69400 -12.67232 -12.55988 -12.46394 -12.19951 -12.07961 -11.85992 -11.80438 -11.68672 -11.21505 -11.20156 -10.70625 -10.38612 -9.88042 -9.60016 -9.10912 -8.38682 -5.32258 0.01141 0.79062 0.85032 1.58073 1.61779 1.69875 1.81646 1.88756 2.14966 2.71287 3.13234 3.40956 3.58728 3.67168 3.74432 3.91940 3.93972 3.95147 4.03581 4.07709 4.19608 4.25268 4.28281 4.34323 4.49046 4.53633 4.54332 4.64209 4.77971 4.81376 4.85840 4.93025 4.94694 5.08934 5.14401 5.18876 5.28006 5.35556 5.40971 5.60935 5.61035 5.84052 6.26283 6.44764 6.49614 7.00782 7.09435 7.99442 8.12200 9.13354 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011352 B = 0.003467 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.833177 B = 8074.641060 C =10176.190554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.041 3.959 3 O -0.258 6.258 4 C 0.388 3.612 5 N -0.482 5.482 6 C -0.078 4.078 7 C 0.599 3.401 8 O -0.547 6.547 9 N -0.587 5.587 10 C 0.074 3.926 11 C -0.130 4.130 12 C 0.177 3.823 13 H 0.043 0.957 14 N -0.749 5.749 15 C -0.325 4.325 16 H 0.067 0.933 17 C -0.107 4.107 18 N -0.978 5.978 19 Si 1.132 2.868 20 H -0.271 1.271 21 H -0.291 1.291 22 H -0.292 1.292 23 C -0.122 4.122 24 C 0.148 3.852 25 H 0.085 0.915 26 C -0.125 4.125 27 C 0.034 3.966 28 O -0.213 6.213 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.157 0.843 35 H 0.067 0.933 36 H 0.037 0.963 37 H 0.055 0.945 38 H 0.357 0.643 39 H 0.243 0.757 40 H 0.075 0.925 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.540 -24.549 -14.201 28.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 O -0.167 6.167 4 C 0.143 3.857 5 N -0.229 5.229 6 C -0.195 4.195 7 C 0.387 3.613 8 O -0.427 6.427 9 N -0.318 5.318 10 C -0.049 4.049 11 C -0.171 4.171 12 C 0.069 3.931 13 H 0.061 0.939 14 N -0.390 5.390 15 C -0.456 4.456 16 H 0.084 0.916 17 C -0.298 4.298 18 N -0.626 5.626 19 Si 0.957 3.043 20 H -0.196 1.196 21 H -0.218 1.218 22 H -0.219 1.219 23 C -0.161 4.161 24 C 0.045 3.955 25 H 0.103 0.897 26 C -0.182 4.182 27 C -0.038 4.038 28 O -0.104 6.104 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.131 0.869 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.173 0.827 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.189 0.811 39 H 0.053 0.947 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -3.374 -22.822 -13.636 26.799 hybrid contribution 1.066 -1.607 -0.097 1.931 sum -2.308 -24.429 -13.734 28.120 Atomic orbital electron populations 1.21871 0.90017 1.05075 1.03778 1.23452 0.97836 0.77697 1.04262 1.86444 1.08096 1.33437 1.88722 1.23665 0.84093 0.81651 0.96284 1.70613 1.04717 1.21230 1.26322 1.21717 0.89730 0.94980 1.13074 1.16981 0.86335 0.81490 0.76501 1.90843 1.18020 1.81528 1.52281 1.48066 1.08390 1.05548 1.69802 1.22977 0.81815 1.03252 0.96823 1.22324 1.00226 0.97234 0.97279 1.20375 0.92932 0.90305 0.89466 0.93876 1.42667 1.46567 1.38732 1.11081 1.20424 1.15312 1.10484 0.99425 0.91550 1.27201 1.05377 1.05048 0.92157 1.70926 1.28061 1.35175 1.28469 0.82555 0.73072 0.72948 0.75686 1.19572 1.21764 1.21891 1.22145 0.97004 0.99096 0.97853 1.21350 0.87999 0.88747 0.97374 0.89734 1.22071 0.93445 0.99122 1.03575 1.25551 0.86636 0.91708 0.99952 1.84436 1.16043 1.38401 1.71533 0.91680 0.91256 0.86930 0.89261 0.89761 0.82725 0.91468 0.94423 0.92648 0.81126 0.94657 0.90655 0.92990 0.90508 0.92129 0.93103 0.71332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 71.98 0.74 -0.32 16 2 C 0.04 0.42 6.38 71.98 0.46 0.87 16 3 O -0.26 -4.99 10.19 -64.13 -0.65 -5.64 16 4 C 0.39 8.54 8.98 130.43 1.17 9.72 16 5 N -0.48 -13.03 7.71 -419.38 -3.23 -16.27 16 6 C -0.08 -1.98 6.75 40.31 0.27 -1.71 16 7 C 0.60 17.63 7.49 86.65 0.65 18.28 16 8 O -0.55 -16.61 12.46 -4.10 -0.05 -16.66 16 9 N -0.59 -18.21 2.97 -798.95 -2.37 -20.59 16 10 C 0.07 2.39 6.34 86.36 0.55 2.94 16 11 C -0.13 -5.08 5.66 30.67 0.17 -4.91 16 12 C 0.18 7.47 2.73 45.02 0.12 7.59 16 13 H 0.04 1.86 8.08 -2.38 -0.02 1.84 16 14 N -0.75 -39.40 5.12 -322.80 -1.65 -41.05 16 15 C -0.33 -18.77 9.93 84.03 0.83 -17.93 16 16 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 17 C -0.11 -6.37 5.50 84.86 0.47 -5.91 16 18 N -0.98 -62.85 13.70 21.65 0.30 -62.55 16 19 Si 1.13 53.39 29.92 68.60 2.05 55.44 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 C -0.12 -4.34 4.84 30.67 0.15 -4.19 16 24 C 0.15 4.49 3.49 44.98 0.16 4.65 16 25 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 26 C -0.12 -3.47 7.62 71.98 0.55 -2.92 16 27 C 0.03 0.59 11.94 67.28 0.80 1.39 16 28 O -0.21 -3.70 10.20 18.79 0.19 -3.50 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 31 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.16 4.95 3.60 -59.65 -0.21 4.74 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.36 19.75 6.63 -92.71 -0.61 19.13 16 39 H 0.24 15.65 6.78 -92.71 -0.63 15.02 16 40 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 41 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.08 2.15 6.57 -2.38 -0.02 2.13 16 43 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.05 1.54 6.93 -2.39 -0.02 1.53 16 45 H 0.27 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -74.30 363.67 2.00 -72.30 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: 0.33 Total: 30.97 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 7.09 Total: 7.55 kcal Atomic # 7 Polarization: -133.49 SS G_CDS: -6.97 Total: -140.45 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.51 Total: -25.80 kcal Atomic # 14 Polarization: 53.39 SS G_CDS: 2.05 Total: 55.44 kcal Total: -74.30 2.00 -72.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044656660.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.106 kcal (2) G-P(sol) polarization free energy of solvation -74.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds