Wall clock time and date at job start Tue Mar 31 2020 14:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.46543 * 2 1 4 4 C 1.35356 * 116.99780 * 179.97438 * 3 2 1 5 5 N 1.30549 * 125.44644 * 179.72073 * 4 3 2 6 6 C 1.36330 * 108.38386 * 179.87940 * 5 4 3 7 7 C 1.47368 * 126.41526 * 180.14918 * 6 5 4 8 8 O 1.21619 * 119.99938 * 173.76090 * 7 6 5 9 9 N 1.34780 * 119.99838 * 353.76344 * 7 6 5 10 10 C 1.46921 * 120.62901 * 4.37823 * 9 7 6 11 11 C 1.52763 * 109.01079 * 233.58224 * 10 9 7 12 12 C 1.53040 * 109.38584 * 305.59758 * 11 10 9 13 13 H 1.09005 * 109.45243 * 301.21262 * 12 11 10 14 14 N 1.46499 * 109.46049 * 181.25818 * 12 11 10 15 15 C 1.36940 * 120.00051 * 84.92753 * 14 12 11 16 16 H 1.07998 * 120.00224 * 0.02562 * 15 14 12 17 17 C 1.38809 * 119.99826 * 179.97438 * 15 14 12 18 18 N 1.31626 * 120.00152 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00049 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47069 * 60.00236 * 19 17 15 21 21 H 1.48503 * 109.47520 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47413 * 300.00160 * 19 17 15 23 23 C 1.53037 * 109.53943 * 61.23071 * 12 11 10 24 24 C 1.46924 * 120.62952 * 184.66077 * 9 7 6 25 25 H 1.09006 * 109.58557 * 6.58332 * 24 9 7 26 26 C 1.52991 * 109.58744 * 246.29716 * 24 9 7 27 27 C 1.35916 * 107.17375 * 0.38081 * 6 5 4 28 28 O 1.34202 * 125.44713 * 0.02566 * 4 3 2 29 29 H 1.09005 * 109.46648 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47190 * 60.00208 * 1 2 3 31 31 H 1.08995 * 109.47053 * 299.99773 * 1 2 3 32 32 H 1.08996 * 109.47114 * 119.99973 * 2 1 3 33 33 H 1.08992 * 109.47293 * 240.00689 * 2 1 3 34 34 H 1.08995 * 109.58973 * 353.42127 * 10 9 7 35 35 H 1.09002 * 109.58584 * 113.85051 * 10 9 7 36 36 H 1.08993 * 109.56909 * 185.55467 * 11 10 9 37 37 H 1.09009 * 109.37924 * 65.51949 * 11 10 9 38 38 H 0.96997 * 120.00023 * 264.92842 * 14 12 11 39 39 H 0.97001 * 120.00039 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.49388 * 178.68270 * 23 12 11 41 41 H 1.09002 * 109.52301 * 58.61210 * 23 12 11 42 42 H 1.08998 * 109.47273 * 60.00019 * 26 24 9 43 43 H 1.09006 * 109.47592 * 180.02562 * 26 24 9 44 44 H 1.09001 * 109.47294 * 299.99619 * 26 24 9 45 45 H 1.08004 * 126.45924 * 179.74889 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3481 1.5248 0.0005 5 7 3.9593 2.6784 -0.0046 6 6 5.3038 2.4527 0.0007 7 6 6.3628 3.4774 0.0008 8 8 7.5275 3.1481 0.1203 9 7 6.0407 4.7794 -0.1315 10 6 4.6343 5.2013 -0.1806 11 6 4.4113 6.0449 -1.4345 12 6 5.4154 7.1996 -1.4551 13 1 5.2888 7.8068 -0.5588 14 7 5.1835 8.0271 -2.6416 15 6 4.2401 9.0192 -2.6107 16 1 3.6675 9.1921 -1.7115 17 6 4.0207 9.8036 -3.7347 18 7 4.7191 9.5933 -4.8305 19 14 2.7335 11.1565 -3.6928 20 1 3.0806 12.1373 -2.6332 21 1 2.6934 11.8427 -5.0092 22 1 1.4027 10.5649 -3.4029 23 6 6.8390 6.6393 -1.4945 24 6 7.0894 5.8032 -0.2356 25 1 8.0648 5.3214 -0.3050 26 6 7.0498 6.7054 0.9993 27 6 5.4846 1.1056 0.0006 28 8 4.2630 0.5430 0.0006 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.8934 -0.5137 -0.8900 34 1 3.9901 4.3227 -0.2137 35 1 4.4000 5.7957 0.7026 36 1 3.3973 6.4446 -1.4301 37 1 4.5534 5.4233 -2.3187 38 1 5.6980 7.8721 -3.4491 39 1 4.5660 10.1416 -5.6159 40 1 7.5529 7.4622 -1.5328 41 1 6.9593 6.0121 -2.3779 42 1 7.2171 6.1051 1.8935 43 1 7.8281 7.4644 0.9200 44 1 6.0756 7.1901 1.0640 45 1 6.4309 0.5850 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044656664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:16 Heat of formation + Delta-G solvation = -18.153631 kcal Electronic energy + Delta-G solvation = -27956.999429 eV Core-core repulsion = 23977.984635 eV Total energy + Delta-G solvation = -3979.014794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.71668 -40.07619 -39.25967 -37.52454 -35.36872 -34.41048 -32.49650 -32.05253 -31.69489 -29.78116 -29.17466 -27.19885 -24.98730 -24.17211 -23.67951 -23.10056 -22.50724 -21.44167 -20.60464 -19.14804 -18.11204 -17.85735 -17.34990 -16.88949 -16.72131 -15.97319 -15.72125 -15.27523 -14.91374 -14.79032 -14.00553 -13.97093 -13.67847 -13.40466 -13.38908 -13.35788 -13.20973 -12.91363 -12.64792 -12.44484 -12.24036 -11.93094 -11.78832 -11.65075 -11.19350 -11.15356 -10.86933 -10.82194 -10.75268 -10.49859 -10.20952 -10.16571 -9.77260 -9.55069 -9.46445 -8.96738 -8.77162 -8.36123 -6.89183 -5.71395 -2.99754 0.92212 1.59570 1.83821 2.42784 3.04428 3.27916 3.47228 3.51523 3.52483 4.17843 4.30983 4.32581 4.62952 4.63380 4.64857 4.76683 5.10249 5.17307 5.23737 5.24508 5.31804 5.40883 5.45175 5.53112 5.55612 5.65842 5.75128 5.85912 5.90362 6.03673 6.08374 6.19930 6.29749 6.38535 6.53132 6.57885 6.64325 6.69807 6.88580 7.06658 7.20416 7.26626 7.62386 7.74271 8.19400 8.47298 9.58108 10.16958 10.51766 11.51353 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011806 B = 0.003393 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.188932 B = 8249.477141 C =10078.890706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.244 6.244 4 C 0.384 3.616 5 N -0.447 5.447 6 C -0.036 4.036 7 C 0.598 3.402 8 O -0.547 6.547 9 N -0.576 5.576 10 C 0.063 3.937 11 C -0.145 4.145 12 C 0.177 3.823 13 H 0.050 0.950 14 N -0.725 5.725 15 C -0.236 4.236 16 H 0.069 0.931 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.906 3.094 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.286 1.286 23 C -0.133 4.133 24 C 0.140 3.860 25 H 0.095 0.905 26 C -0.159 4.159 27 C -0.002 4.002 28 O -0.226 6.226 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.147 0.853 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.383 0.617 39 H 0.255 0.745 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.800 -22.021 12.582 25.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.152 6.152 4 C 0.140 3.860 5 N -0.193 5.193 6 C -0.154 4.154 7 C 0.385 3.615 8 O -0.426 6.426 9 N -0.307 5.307 10 C -0.060 4.060 11 C -0.186 4.186 12 C 0.067 3.933 13 H 0.068 0.932 14 N -0.365 5.365 15 C -0.367 4.367 16 H 0.087 0.913 17 C -0.210 4.210 18 N -0.583 5.583 19 Si 0.737 3.263 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.213 1.213 23 C -0.171 4.171 24 C 0.037 3.963 25 H 0.113 0.887 26 C -0.217 4.217 27 C -0.074 4.074 28 O -0.118 6.118 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.163 0.837 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.216 0.784 39 H 0.065 0.935 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -2.890 -21.384 12.658 25.017 hybrid contribution -0.407 -0.023 -0.437 0.597 sum -3.297 -21.407 12.221 24.869 Atomic orbital electron populations 1.21819 0.91169 1.03619 1.04399 1.23066 0.96957 0.79358 1.03000 1.86422 1.08980 1.30815 1.88979 1.23775 0.83428 0.81818 0.97004 1.70945 1.04060 1.19578 1.24766 1.21755 0.90081 0.94015 1.09576 1.16734 0.85931 0.81613 0.77210 1.90794 1.18395 1.81161 1.52298 1.48083 1.08885 1.04875 1.68810 1.22982 0.81041 1.03362 0.98617 1.22507 1.01958 0.97994 0.96150 1.20252 0.90676 0.90607 0.91782 0.93207 1.42431 1.45373 1.37532 1.11158 1.19199 1.12242 1.07806 0.97462 0.91257 1.24730 1.00090 1.00097 0.96124 1.69658 1.43525 1.42407 1.02695 0.86287 0.81483 0.82013 0.76530 1.21318 1.21784 1.21315 1.22206 0.99504 0.99145 0.96286 1.21269 0.91319 0.88065 0.95640 0.88696 1.22124 1.03151 0.99495 0.96967 1.24890 0.85778 0.92729 1.04005 1.84382 1.16259 1.39168 1.71963 0.89486 0.90790 0.90907 0.90826 0.90758 0.83727 0.92224 0.90867 0.92678 0.78378 0.93547 0.90522 0.91906 0.92857 0.91296 0.91554 0.74809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 10.28 37.16 0.38 -0.28 16 2 C 0.05 0.31 6.38 37.16 0.24 0.54 16 3 O -0.24 -2.48 10.19 -40.99 -0.42 -2.90 16 4 C 0.38 4.51 8.98 52.22 0.47 4.97 16 5 N -0.45 -6.24 7.71 -11.71 -0.09 -6.33 16 6 C -0.04 -0.49 6.74 -82.99 -0.56 -1.05 16 7 C 0.60 9.44 7.69 -12.54 -0.10 9.34 16 8 O -0.55 -9.42 16.33 5.26 0.09 -9.34 16 9 N -0.58 -9.15 2.68 -166.77 -0.45 -9.60 16 10 C 0.06 1.00 5.88 -3.93 -0.02 0.98 16 11 C -0.14 -2.74 5.64 -26.83 -0.15 -2.89 16 12 C 0.18 3.58 2.53 -67.89 -0.17 3.40 16 13 H 0.05 1.02 6.44 -51.93 -0.33 0.69 16 14 N -0.72 -18.41 5.12 -53.39 -0.27 -18.69 16 15 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 18 N -0.93 -28.56 13.06 55.49 0.72 -27.83 16 19 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 C -0.13 -2.33 5.03 -26.61 -0.13 -2.46 16 24 C 0.14 2.17 3.18 -67.60 -0.22 1.96 16 25 H 0.09 1.49 7.03 -51.93 -0.37 1.12 16 26 C -0.16 -2.20 9.04 37.15 0.34 -1.86 16 27 C 0.00 -0.02 11.94 29.90 0.36 0.34 16 28 O -0.23 -2.27 10.20 -17.76 -0.18 -2.45 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.15 2.31 3.61 -80.66 -0.29 2.02 16 35 H 0.06 0.92 7.52 -51.93 -0.39 0.53 16 36 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.05 1.11 8.14 -51.92 -0.42 0.68 16 38 H 0.38 10.42 7.80 -40.82 -0.32 10.10 16 39 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.07 0.96 5.76 -51.93 -0.30 0.66 16 45 H 0.24 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -33.36 366.82 -6.53 -39.89 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.62 Total: 8.41 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 0.18 Total: 5.73 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: -0.09 Total: -62.45 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.51 Total: -14.69 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.36 -6.53 -39.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044656664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.740 kcal (2) G-P(sol) polarization free energy of solvation -33.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds