Wall clock time and date at job start Tue Mar 31 2020 14:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.46543 * 2 1 4 4 C 1.35356 * 116.99780 * 179.97438 * 3 2 1 5 5 N 1.30549 * 125.44644 * 179.72073 * 4 3 2 6 6 C 1.36330 * 108.38386 * 179.87940 * 5 4 3 7 7 C 1.47368 * 126.41526 * 180.14918 * 6 5 4 8 8 O 1.21619 * 119.99938 * 173.76090 * 7 6 5 9 9 N 1.34780 * 119.99838 * 353.76344 * 7 6 5 10 10 C 1.46921 * 120.62901 * 4.37823 * 9 7 6 11 11 C 1.52763 * 109.01079 * 233.58224 * 10 9 7 12 12 C 1.53040 * 109.38584 * 305.59758 * 11 10 9 13 13 H 1.09005 * 109.45243 * 301.21262 * 12 11 10 14 14 N 1.46499 * 109.46049 * 181.25818 * 12 11 10 15 15 C 1.36940 * 120.00051 * 84.92753 * 14 12 11 16 16 H 1.07998 * 120.00224 * 0.02562 * 15 14 12 17 17 C 1.38809 * 119.99826 * 179.97438 * 15 14 12 18 18 N 1.31626 * 120.00152 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00049 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47069 * 60.00236 * 19 17 15 21 21 H 1.48503 * 109.47520 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47413 * 300.00160 * 19 17 15 23 23 C 1.53037 * 109.53943 * 61.23071 * 12 11 10 24 24 C 1.46924 * 120.62952 * 184.66077 * 9 7 6 25 25 H 1.09006 * 109.58557 * 6.58332 * 24 9 7 26 26 C 1.52991 * 109.58744 * 246.29716 * 24 9 7 27 27 C 1.35916 * 107.17375 * 0.38081 * 6 5 4 28 28 O 1.34202 * 125.44713 * 0.02566 * 4 3 2 29 29 H 1.09005 * 109.46648 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47190 * 60.00208 * 1 2 3 31 31 H 1.08995 * 109.47053 * 299.99773 * 1 2 3 32 32 H 1.08996 * 109.47114 * 119.99973 * 2 1 3 33 33 H 1.08992 * 109.47293 * 240.00689 * 2 1 3 34 34 H 1.08995 * 109.58973 * 353.42127 * 10 9 7 35 35 H 1.09002 * 109.58584 * 113.85051 * 10 9 7 36 36 H 1.08993 * 109.56909 * 185.55467 * 11 10 9 37 37 H 1.09009 * 109.37924 * 65.51949 * 11 10 9 38 38 H 0.96997 * 120.00023 * 264.92842 * 14 12 11 39 39 H 0.97001 * 120.00039 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.49388 * 178.68270 * 23 12 11 41 41 H 1.09002 * 109.52301 * 58.61210 * 23 12 11 42 42 H 1.08998 * 109.47273 * 60.00019 * 26 24 9 43 43 H 1.09006 * 109.47592 * 180.02562 * 26 24 9 44 44 H 1.09001 * 109.47294 * 299.99619 * 26 24 9 45 45 H 1.08004 * 126.45924 * 179.74889 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3481 1.5248 0.0005 5 7 3.9593 2.6784 -0.0046 6 6 5.3038 2.4527 0.0007 7 6 6.3628 3.4774 0.0008 8 8 7.5275 3.1481 0.1203 9 7 6.0407 4.7794 -0.1315 10 6 4.6343 5.2013 -0.1806 11 6 4.4113 6.0449 -1.4345 12 6 5.4154 7.1996 -1.4551 13 1 5.2888 7.8068 -0.5588 14 7 5.1835 8.0271 -2.6416 15 6 4.2401 9.0192 -2.6107 16 1 3.6675 9.1921 -1.7115 17 6 4.0207 9.8036 -3.7347 18 7 4.7191 9.5933 -4.8305 19 14 2.7335 11.1565 -3.6928 20 1 3.0806 12.1373 -2.6332 21 1 2.6934 11.8427 -5.0092 22 1 1.4027 10.5649 -3.4029 23 6 6.8390 6.6393 -1.4945 24 6 7.0894 5.8032 -0.2356 25 1 8.0648 5.3214 -0.3050 26 6 7.0498 6.7054 0.9993 27 6 5.4846 1.1056 0.0006 28 8 4.2630 0.5430 0.0006 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.8934 -0.5137 -0.8900 34 1 3.9901 4.3227 -0.2137 35 1 4.4000 5.7957 0.7026 36 1 3.3973 6.4446 -1.4301 37 1 4.5534 5.4233 -2.3187 38 1 5.6980 7.8721 -3.4491 39 1 4.5660 10.1416 -5.6159 40 1 7.5529 7.4622 -1.5328 41 1 6.9593 6.0121 -2.3779 42 1 7.2171 6.1051 1.8935 43 1 7.8281 7.4644 0.9200 44 1 6.0756 7.1901 1.0640 45 1 6.4309 0.5850 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044656664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:15 Heat of formation + Delta-G solvation = -42.093444 kcal Electronic energy + Delta-G solvation = -27958.037537 eV Core-core repulsion = 23977.984635 eV Total energy + Delta-G solvation = -3980.052902 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.59951 -41.33524 -39.98650 -38.92349 -36.42235 -36.09237 -33.80819 -33.32770 -32.77801 -31.08576 -30.53784 -28.61394 -26.22404 -25.55177 -24.70117 -24.25895 -23.65016 -22.77217 -21.72027 -20.29871 -19.43686 -18.92200 -18.65747 -18.40803 -17.52036 -17.00676 -16.70244 -16.61285 -16.11929 -16.00351 -15.67456 -15.31580 -15.11749 -14.89386 -14.65889 -14.39561 -14.00312 -13.92212 -13.84807 -13.55212 -13.35722 -13.00535 -12.88067 -12.77748 -12.65971 -12.57204 -12.43543 -12.21019 -12.18244 -11.99875 -11.79343 -11.75906 -11.45494 -11.11486 -11.05366 -10.55010 -9.90830 -9.59231 -8.97717 -7.91664 -5.20335 0.02026 0.80463 0.87287 1.48093 1.51265 1.57087 1.63184 1.92035 2.15570 2.58081 3.15357 3.41518 3.69914 3.74526 3.82542 3.93882 3.95847 4.01094 4.12223 4.17496 4.26507 4.28610 4.30874 4.43077 4.54089 4.54862 4.60987 4.71394 4.80166 4.87598 4.88446 5.01024 5.04150 5.07816 5.16521 5.25593 5.28811 5.35358 5.52614 5.55136 5.61862 5.86343 6.27284 6.30290 6.47312 6.99003 7.35681 8.11328 8.35367 9.31883 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011806 B = 0.003393 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.188932 B = 8249.477141 C =10078.890706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.041 3.959 3 O -0.258 6.258 4 C 0.389 3.611 5 N -0.479 5.479 6 C -0.075 4.075 7 C 0.599 3.401 8 O -0.565 6.565 9 N -0.582 5.582 10 C 0.075 3.925 11 C -0.133 4.133 12 C 0.175 3.825 13 H 0.052 0.948 14 N -0.737 5.737 15 C -0.236 4.236 16 H 0.076 0.924 17 C -0.077 4.077 18 N -0.972 5.972 19 Si 0.972 3.028 20 H -0.277 1.277 21 H -0.297 1.297 22 H -0.279 1.279 23 C -0.122 4.122 24 C 0.144 3.856 25 H 0.097 0.903 26 C -0.153 4.153 27 C 0.034 3.966 28 O -0.213 6.213 29 H 0.112 0.888 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.154 0.846 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.036 0.964 38 H 0.370 0.630 39 H 0.250 0.750 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.058 0.942 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.335 -23.669 14.232 27.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.033 4.033 3 O -0.166 6.166 4 C 0.143 3.857 5 N -0.226 5.226 6 C -0.192 4.192 7 C 0.387 3.613 8 O -0.446 6.446 9 N -0.312 5.312 10 C -0.048 4.048 11 C -0.174 4.174 12 C 0.066 3.934 13 H 0.070 0.930 14 N -0.376 5.376 15 C -0.368 4.368 16 H 0.094 0.906 17 C -0.269 4.269 18 N -0.623 5.623 19 Si 0.801 3.199 20 H -0.203 1.203 21 H -0.224 1.224 22 H -0.205 1.205 23 C -0.161 4.161 24 C 0.041 3.959 25 H 0.115 0.885 26 C -0.211 4.211 27 C -0.038 4.038 28 O -0.104 6.104 29 H 0.130 0.870 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.170 0.830 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.201 0.799 39 H 0.058 0.942 40 H 0.096 0.904 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.077 0.923 45 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -3.442 -23.063 14.361 27.386 hybrid contribution -0.259 0.328 -0.914 1.005 sum -3.702 -22.736 13.447 26.673 Atomic orbital electron populations 1.21870 0.90029 1.05052 1.03784 1.23449 0.97824 0.77718 1.04263 1.86449 1.08044 1.33400 1.88728 1.23667 0.84099 0.81631 0.96267 1.70646 1.04524 1.21172 1.26230 1.21531 0.89704 0.94760 1.13209 1.16966 0.86264 0.81691 0.76351 1.90772 1.19228 1.81405 1.53208 1.48105 1.08579 1.05319 1.69221 1.22866 0.81627 1.03259 0.97061 1.22302 1.00507 0.97478 0.97113 1.20443 0.92625 0.90446 0.89839 0.93008 1.42642 1.44855 1.37966 1.12160 1.19588 1.12018 1.07722 0.97474 0.90581 1.25547 1.02567 1.02843 0.95976 1.69826 1.45512 1.43702 1.03269 0.85233 0.79165 0.79248 0.76267 1.20276 1.22362 1.20477 1.22072 0.97670 0.99206 0.97163 1.21223 0.91413 0.88041 0.95206 0.88454 1.22074 1.03182 0.99477 0.96350 1.25546 0.86656 0.91727 0.99895 1.84433 1.15993 1.38412 1.71521 0.86970 0.91667 0.91248 0.89275 0.89756 0.83024 0.91347 0.92389 0.94466 0.79872 0.94156 0.90399 0.93173 0.91801 0.90038 0.92289 0.71414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 71.98 0.74 -0.30 16 2 C 0.04 0.41 6.38 71.98 0.46 0.87 16 3 O -0.26 -4.93 10.19 -64.25 -0.65 -5.58 16 4 C 0.39 8.53 8.98 130.43 1.17 9.70 16 5 N -0.48 -12.93 7.71 -419.39 -3.23 -16.17 16 6 C -0.07 -1.94 6.74 40.31 0.27 -1.67 16 7 C 0.60 18.30 7.69 86.65 0.67 18.97 16 8 O -0.57 -18.75 16.33 -4.09 -0.07 -18.82 16 9 N -0.58 -18.14 2.68 -799.77 -2.15 -20.29 16 10 C 0.07 2.37 5.88 86.22 0.51 2.88 16 11 C -0.13 -5.11 5.64 30.53 0.17 -4.94 16 12 C 0.17 7.14 2.53 45.02 0.11 7.26 16 13 H 0.05 2.12 6.44 -2.38 -0.02 2.10 16 14 N -0.74 -38.26 5.12 -322.82 -1.65 -39.91 16 15 C -0.24 -13.31 9.93 84.03 0.83 -12.47 16 16 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 17 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 18 N -0.97 -60.71 13.06 21.65 0.28 -60.42 16 19 Si 0.97 46.80 29.55 68.60 2.03 48.83 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 23 C -0.12 -4.32 5.03 30.67 0.15 -4.17 16 24 C 0.14 4.37 3.18 44.97 0.14 4.51 16 25 H 0.10 2.96 7.03 -2.38 -0.02 2.94 16 26 C -0.15 -3.99 9.04 71.98 0.65 -3.34 16 27 C 0.03 0.62 11.94 67.28 0.80 1.42 16 28 O -0.21 -3.71 10.20 18.89 0.19 -3.52 16 29 H 0.11 0.22 8.14 -2.38 -0.02 0.20 16 30 H 0.06 0.57 8.14 -2.38 -0.02 0.56 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.15 4.82 3.61 -59.10 -0.21 4.61 16 35 H 0.07 2.05 7.52 -2.39 -0.02 2.03 16 36 H 0.06 2.37 8.14 -2.39 -0.02 2.36 16 37 H 0.04 1.53 8.14 -2.38 -0.02 1.52 16 38 H 0.37 20.81 7.80 -92.71 -0.72 20.09 16 39 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 40 H 0.08 2.72 8.14 -2.38 -0.02 2.70 16 41 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 44 H 0.06 1.62 5.76 -2.39 -0.01 1.61 16 45 H 0.27 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -72.35 366.82 1.99 -70.36 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.09 Total: 30.86 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 7.15 Total: 14.66 kcal Atomic # 7 Polarization: -130.04 SS G_CDS: -6.75 Total: -136.79 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.53 Total: -27.92 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -72.35 1.99 -70.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044656664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.268 kcal (2) G-P(sol) polarization free energy of solvation -72.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds