Wall clock time and date at job start Tue Mar 31 2020 14:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42906 * 109.46742 * 2 1 4 4 C 1.35358 * 116.99721 * 179.97438 * 3 2 1 5 5 N 1.30549 * 125.44371 * 179.97438 * 4 3 2 6 6 C 1.36331 * 108.38115 * 179.97438 * 5 4 3 7 7 C 1.47371 * 126.41340 * 179.97438 * 6 5 4 8 8 O 1.21619 * 119.99681 * 187.33499 * 7 6 5 9 9 N 1.34778 * 119.99855 * 7.33201 * 7 6 5 10 10 C 1.46927 * 120.63080 * 6.73750 * 9 7 6 11 11 C 1.53162 * 108.76815 * 233.63099 * 10 9 7 12 12 C 1.53036 * 109.32648 * 305.35707 * 11 10 9 13 13 H 1.09003 * 109.46180 * 181.38784 * 12 11 10 14 14 N 1.46501 * 109.46199 * 301.35481 * 12 11 10 15 15 C 1.36928 * 120.00370 * 275.03170 * 14 12 11 16 16 H 1.08005 * 120.00143 * 359.72586 * 15 14 12 17 17 C 1.38818 * 120.00338 * 179.97438 * 15 14 12 18 18 N 1.31618 * 119.99646 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00286 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47108 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47046 * 120.00271 * 19 17 15 22 22 H 1.48500 * 109.47416 * 240.00378 * 19 17 15 23 23 C 1.53036 * 109.53058 * 61.37350 * 12 11 10 24 24 C 1.46926 * 120.62991 * 186.76136 * 9 7 6 25 25 H 1.09002 * 109.58345 * 246.16037 * 24 9 7 26 26 C 1.53002 * 109.70107 * 6.51288 * 24 9 7 27 27 C 1.35911 * 107.17585 * 0.24031 * 6 5 4 28 28 O 1.34204 * 125.44392 * 359.97438 * 4 3 2 29 29 H 1.08998 * 109.47364 * 299.99791 * 1 2 3 30 30 H 1.08998 * 109.47276 * 60.00199 * 1 2 3 31 31 H 1.09001 * 109.46878 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47364 * 240.00209 * 2 1 3 33 33 H 1.09006 * 109.47362 * 119.99508 * 2 1 3 34 34 H 1.08999 * 109.58450 * 353.42242 * 10 9 7 35 35 H 1.08997 * 109.58399 * 113.83944 * 10 9 7 36 36 H 1.09001 * 109.47907 * 185.40623 * 11 10 9 37 37 H 1.08997 * 109.50062 * 65.32122 * 11 10 9 38 38 H 0.97008 * 119.99884 * 95.02758 * 14 12 11 39 39 H 0.96998 * 120.00095 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.49860 * 58.58587 * 23 12 11 41 41 H 1.08994 * 109.50036 * 178.65645 * 23 12 11 42 42 H 1.08998 * 109.46836 * 172.14540 * 26 24 9 43 43 H 1.08998 * 109.47113 * 292.13832 * 26 24 9 44 44 H 1.08993 * 109.47234 * 52.14039 * 26 24 9 45 45 H 1.08006 * 126.46028 * 179.72430 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3482 1.5247 0.0005 5 7 3.9593 2.6783 0.0001 6 6 5.3038 2.4526 0.0015 7 6 6.3629 3.4773 0.0011 8 8 7.5264 3.1491 -0.1321 9 7 6.0421 4.7780 0.1482 10 6 4.6626 5.1786 0.4565 11 6 4.2056 6.2099 -0.5795 12 6 5.2037 7.3695 -0.6142 13 1 4.8675 8.1166 -1.3333 14 7 5.2920 7.9774 0.7158 15 6 4.3900 8.9367 1.0914 16 1 3.6160 9.2484 0.4056 17 6 4.4733 9.5123 2.3519 18 7 5.4198 9.1364 3.1857 19 14 3.2433 10.8214 2.8641 20 1 2.2874 11.0640 1.7537 21 1 2.5004 10.3601 4.0642 22 1 3.9637 12.0805 3.1816 23 6 6.5811 6.8468 -1.0284 24 6 7.0653 5.8224 0.0027 25 1 7.2227 6.3158 0.9618 26 6 8.3775 5.1962 -0.4735 27 6 5.4846 1.1055 -0.0027 28 8 4.2630 0.5428 0.0016 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 4.0109 4.3058 0.4156 35 1 4.6241 5.6194 1.4526 36 1 3.2196 6.5865 -0.3072 37 1 4.1578 5.7415 -1.5626 38 1 5.9895 7.7003 1.3304 39 1 5.4779 9.5383 4.0666 40 1 6.5109 6.3723 -2.0072 41 1 7.2859 7.6767 -1.0761 42 1 9.0904 5.9850 -0.7137 43 1 8.7863 4.5651 0.3155 44 1 8.1908 4.5925 -1.3616 45 1 6.4309 0.5849 -0.0071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044656668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:21 Heat of formation + Delta-G solvation = -25.622899 kcal Electronic energy + Delta-G solvation = -28435.595553 eV Core-core repulsion = 24456.256867 eV Total energy + Delta-G solvation = -3979.338686 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.57095 -41.46855 -39.97213 -38.83109 -36.36171 -35.80989 -33.76566 -33.58025 -32.76366 -30.90407 -30.51805 -28.35824 -26.01851 -25.62707 -24.98257 -24.32274 -23.87299 -22.52146 -21.47389 -20.32058 -19.38732 -19.11790 -18.64847 -17.98355 -17.45278 -17.15947 -16.73487 -16.50446 -16.15739 -15.92953 -15.63723 -15.41282 -15.10418 -14.83288 -14.56559 -14.39174 -14.15011 -13.91669 -13.55677 -13.50874 -13.32097 -13.04896 -12.89472 -12.76807 -12.65154 -12.55522 -12.47910 -12.27334 -12.06031 -11.95184 -11.76621 -11.65740 -11.39964 -11.12950 -10.68728 -10.30013 -9.80778 -9.47862 -8.94226 -7.89800 -5.17031 0.05436 0.82327 0.89980 1.48535 1.48843 1.58772 1.67287 1.98613 2.20006 2.59180 3.21195 3.43884 3.73296 3.83854 3.89847 3.94141 3.97111 4.06370 4.07665 4.16055 4.26532 4.32689 4.43847 4.46762 4.51838 4.60294 4.67207 4.80498 4.86445 4.87737 4.93269 5.06504 5.13338 5.17057 5.22845 5.25712 5.34857 5.39910 5.42218 5.57733 5.70168 5.86507 6.32290 6.36538 6.52726 7.08153 7.38680 8.14679 8.38788 9.34008 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011667 B = 0.003831 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.345528 B = 7306.682485 C = 9079.638716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.041 3.959 3 O -0.258 6.258 4 C 0.387 3.613 5 N -0.481 5.481 6 C -0.077 4.077 7 C 0.595 3.405 8 O -0.551 6.551 9 N -0.582 5.582 10 C 0.086 3.914 11 C -0.131 4.131 12 C 0.164 3.836 13 H 0.048 0.952 14 N -0.730 5.730 15 C -0.230 4.230 16 H 0.075 0.925 17 C -0.077 4.077 18 N -0.970 5.970 19 Si 0.968 3.032 20 H -0.266 1.266 21 H -0.297 1.297 22 H -0.296 1.296 23 C -0.121 4.121 24 C 0.143 3.857 25 H 0.051 0.949 26 C -0.121 4.121 27 C 0.034 3.966 28 O -0.213 6.213 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.149 0.851 35 H 0.034 0.966 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.372 0.628 39 H 0.248 0.752 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.834 -23.237 -9.928 25.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.033 4.033 3 O -0.167 6.167 4 C 0.141 3.859 5 N -0.228 5.228 6 C -0.194 4.194 7 C 0.383 3.617 8 O -0.431 6.431 9 N -0.312 5.312 10 C -0.036 4.036 11 C -0.171 4.171 12 C 0.056 3.944 13 H 0.066 0.934 14 N -0.371 5.371 15 C -0.362 4.362 16 H 0.093 0.907 17 C -0.268 4.268 18 N -0.622 5.622 19 Si 0.799 3.201 20 H -0.191 1.191 21 H -0.225 1.225 22 H -0.223 1.223 23 C -0.159 4.159 24 C 0.040 3.960 25 H 0.069 0.931 26 C -0.178 4.178 27 C -0.039 4.039 28 O -0.104 6.104 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.131 0.869 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.165 0.835 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.206 0.794 39 H 0.057 0.943 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -4.953 -22.626 -10.035 25.242 hybrid contribution -0.184 0.418 1.068 1.161 sum -5.137 -22.208 -8.967 24.495 Atomic orbital electron populations 1.21867 0.90000 1.05058 1.03769 1.23450 0.97841 0.77738 1.04238 1.86449 1.08042 1.33399 1.88805 1.23642 0.84112 0.81617 0.96500 1.70742 1.04736 1.21388 1.25889 1.21696 0.89731 0.94930 1.13012 1.17025 0.86391 0.81517 0.76735 1.90828 1.18102 1.81378 1.52822 1.48015 1.10926 1.04964 1.67268 1.22626 0.81984 1.01770 0.97236 1.22246 0.99715 0.96745 0.98435 1.20471 0.93898 0.92981 0.87053 0.93375 1.42654 1.35561 1.45456 1.13454 1.19654 1.07023 1.11987 0.97574 0.90683 1.25473 1.00990 1.03135 0.97247 1.69827 1.36577 1.47692 1.08095 0.85132 0.78567 0.78702 0.77746 1.19054 1.22469 1.22336 1.22116 0.97231 0.98043 0.98535 1.21239 0.88399 0.87802 0.98535 0.93128 1.22030 0.94177 0.99364 1.02257 1.25537 0.86636 0.91640 1.00067 1.84428 1.15995 1.38381 1.71614 0.91615 0.91337 0.86915 0.89379 0.89696 0.83458 0.94787 0.92502 0.91476 0.79446 0.94305 0.89900 0.90577 0.92137 0.91878 0.91870 0.71324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 71.98 0.74 -0.41 16 2 C 0.04 0.45 6.38 71.98 0.46 0.91 16 3 O -0.26 -5.32 10.19 -64.27 -0.65 -5.98 16 4 C 0.39 9.18 8.98 130.43 1.17 10.35 16 5 N -0.48 -14.21 7.80 -419.38 -3.27 -17.48 16 6 C -0.08 -2.15 6.71 40.31 0.27 -1.88 16 7 C 0.60 19.76 7.47 86.65 0.65 20.41 16 8 O -0.55 -18.68 12.51 -4.09 -0.05 -18.73 16 9 N -0.58 -21.01 2.97 -798.97 -2.37 -23.38 16 10 C 0.09 3.32 6.06 86.35 0.52 3.85 16 11 C -0.13 -4.94 5.78 30.66 0.18 -4.76 16 12 C 0.16 6.68 3.10 45.02 0.14 6.82 16 13 H 0.05 1.96 8.08 -2.39 -0.02 1.94 16 14 N -0.73 -37.07 4.31 -322.82 -1.39 -38.46 16 15 C -0.23 -12.86 9.93 84.04 0.83 -12.02 16 16 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 17 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 18 N -0.97 -60.37 13.06 21.65 0.28 -60.09 16 19 Si 0.97 47.02 29.55 68.60 2.03 49.04 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 21 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 22 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 23 C -0.12 -4.17 5.07 30.67 0.16 -4.02 16 24 C 0.14 5.18 3.19 44.98 0.14 5.32 16 25 H 0.05 2.15 6.64 -2.39 -0.02 2.13 16 26 C -0.12 -3.83 7.62 71.98 0.55 -3.28 16 27 C 0.03 0.65 11.94 67.28 0.80 1.46 16 28 O -0.21 -4.03 10.20 18.78 0.19 -3.84 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.15 5.42 3.70 -48.45 -0.18 5.24 16 35 H 0.03 1.57 7.74 -2.39 -0.02 1.55 16 36 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.37 20.47 6.06 -92.70 -0.56 19.91 16 39 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 40 H 0.08 2.51 8.14 -2.39 -0.02 2.50 16 41 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 43 H 0.06 2.13 6.68 -2.39 -0.02 2.11 16 44 H 0.06 1.98 6.83 -2.39 -0.02 1.96 16 45 H 0.27 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -70.96 361.24 2.12 -68.84 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: 0.28 Total: 31.32 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 7.08 Total: 18.75 kcal Atomic # 7 Polarization: -132.65 SS G_CDS: -6.75 Total: -139.40 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.51 Total: -28.55 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.04 kcal Total: -70.96 2.12 -68.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044656668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.214 kcal (2) G-P(sol) polarization free energy of solvation -70.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds