Wall clock time and date at job start Tue Mar 31 2020 14:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47492 * 2 1 4 4 C 1.35726 * 117.00197 * 180.02562 * 3 2 1 5 5 C 1.41859 * 126.78715 * 180.23589 * 4 3 2 6 6 C 1.36659 * 103.81411 * 180.11361 * 5 4 3 7 7 C 1.47534 * 126.88358 * 179.97438 * 6 5 4 8 8 O 1.21581 * 119.99783 * 5.70662 * 7 6 5 9 9 N 1.34778 * 120.00257 * 185.71018 * 7 6 5 10 10 C 1.46923 * 120.63046 * 354.00326 * 9 7 6 11 11 C 1.53192 * 108.77090 * 126.41680 * 10 9 7 12 12 C 1.53042 * 109.31485 * 54.64078 * 11 10 9 13 13 H 1.08998 * 109.46277 * 58.63639 * 12 11 10 14 14 N 1.46499 * 109.46098 * 178.61403 * 12 11 10 15 15 C 1.36935 * 119.99759 * 275.02074 * 14 12 11 16 16 H 1.07996 * 120.00486 * 0.02562 * 15 14 12 17 17 C 1.38814 * 119.99677 * 179.97438 * 15 14 12 18 18 N 1.31619 * 119.99707 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00433 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47084 * 89.99723 * 19 17 15 21 21 H 1.48501 * 109.46976 * 330.00249 * 19 17 15 22 22 H 1.48497 * 109.47349 * 209.99798 * 19 17 15 23 23 C 1.53040 * 109.52146 * 298.62518 * 12 11 10 24 24 C 1.46927 * 120.62867 * 174.03606 * 9 7 6 25 25 H 1.08996 * 109.59054 * 113.79842 * 24 9 7 26 26 C 1.52996 * 109.58909 * 353.36794 * 24 9 7 27 27 O 1.34668 * 106.23899 * 359.66780 * 6 5 4 28 28 N 1.20875 * 111.63465 * 0.22173 * 27 6 5 29 29 H 1.09002 * 109.47654 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47085 * 300.00243 * 1 2 3 31 31 H 1.09000 * 109.47397 * 60.00006 * 1 2 3 32 32 H 1.09003 * 109.47085 * 239.99757 * 2 1 3 33 33 H 1.09000 * 109.47397 * 119.99994 * 2 1 3 34 34 H 1.07999 * 128.09414 * 0.02762 * 5 4 3 35 35 H 1.08998 * 109.58736 * 6.63276 * 10 9 7 36 36 H 1.09000 * 109.58827 * 246.20257 * 10 9 7 37 37 H 1.08997 * 109.50162 * 294.68328 * 11 10 9 38 38 H 1.09003 * 109.49977 * 174.58630 * 11 10 9 39 39 H 0.96998 * 120.00338 * 95.02704 * 14 12 11 40 40 H 0.96999 * 120.00368 * 180.02562 * 18 17 15 41 41 H 1.09007 * 109.49619 * 181.32205 * 23 12 11 42 42 H 1.08997 * 109.50264 * 301.41641 * 23 12 11 43 43 H 1.08996 * 109.47585 * 66.19623 * 26 24 9 44 44 H 1.09004 * 109.47394 * 186.19740 * 26 24 9 45 45 H 1.08998 * 109.47245 * 306.19769 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3519 1.5250 -0.0005 5 6 4.0453 2.7626 0.0040 6 6 5.3625 2.3987 -0.0014 7 6 6.5303 3.3003 -0.0004 8 8 6.3715 4.5005 0.1105 9 7 7.7732 2.7934 -0.1224 10 6 7.9922 1.3406 -0.1256 11 6 8.7921 0.9654 -1.3771 12 6 10.0774 1.7948 -1.4238 13 1 10.6626 1.6089 -0.5232 14 7 10.8609 1.4149 -2.6020 15 6 11.7102 0.3424 -2.5427 16 1 11.8022 -0.2237 -1.6276 17 6 12.4521 -0.0179 -3.6592 18 7 13.2681 -1.0491 -3.6024 19 14 12.2926 0.9607 -5.2423 20 1 13.2871 2.0635 -5.2449 21 1 10.9237 1.5285 -5.3374 22 1 12.5400 0.0682 -6.4031 23 6 9.7240 3.2816 -1.5043 24 6 8.9349 3.6833 -0.2541 25 1 9.5706 3.5870 0.6260 26 6 8.4592 5.1309 -0.3909 27 8 5.3812 1.0521 -0.0010 28 7 4.2639 0.5909 -0.0004 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.6295 3.7593 0.0091 35 1 7.0313 0.8263 -0.1383 36 1 8.5510 1.0533 0.7650 37 1 8.1947 1.1697 -2.2656 38 1 9.0442 -0.0946 -1.3435 39 1 10.7781 1.9231 -3.4240 40 1 13.7868 -1.3007 -4.3824 41 1 10.6395 3.8706 -1.5612 42 1 9.1178 3.4640 -2.3916 43 1 7.9828 5.4462 0.5373 44 1 9.3131 5.7760 -0.5984 45 1 7.7428 5.2022 -1.2093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044679993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:16 Heat of formation + Delta-G solvation = 34.983517 kcal Electronic energy + Delta-G solvation = -27912.129765 eV Core-core repulsion = 23935.419170 eV Total energy + Delta-G solvation = -3976.710594 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.22310 -40.55844 -39.30307 -37.70968 -34.84772 -33.77549 -33.41392 -32.02878 -31.74123 -31.31165 -29.86946 -27.31767 -25.15134 -24.28211 -23.84017 -23.24106 -22.70906 -21.57983 -20.61055 -19.95709 -18.22259 -18.15616 -17.55404 -17.32447 -16.33950 -16.25466 -16.04543 -15.31538 -14.98648 -14.77199 -14.32282 -14.22686 -14.08586 -13.56765 -13.48556 -13.42981 -13.12270 -13.08196 -12.64320 -12.36908 -12.31392 -12.19552 -11.97432 -11.54279 -11.52990 -11.45704 -11.05018 -10.99178 -10.91601 -10.55279 -10.33982 -10.07877 -9.98361 -9.63789 -9.59021 -9.49779 -8.96382 -8.68591 -7.32412 -5.80746 -3.16904 0.54702 1.86041 2.27956 2.31556 2.79434 3.05359 3.35237 3.38291 3.43488 3.80452 4.23244 4.49013 4.49523 4.55893 4.58304 4.81660 4.88821 4.89558 4.98453 5.13454 5.17277 5.22578 5.33182 5.35630 5.40289 5.48386 5.54327 5.57752 5.69403 5.80260 5.83892 5.94543 6.06085 6.16681 6.22249 6.29754 6.35817 6.55988 6.66515 6.73375 6.89286 7.16557 7.71703 7.94221 7.94677 8.38198 9.16182 9.88915 10.08253 11.37372 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015043 B = 0.003049 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.892245 B = 9182.057186 C =10402.151184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.282 6.282 4 C 0.208 3.792 5 C -0.158 4.158 6 C -0.053 4.053 7 C 0.601 3.399 8 O -0.510 6.510 9 N -0.586 5.586 10 C 0.093 3.907 11 C -0.150 4.150 12 C 0.182 3.818 13 H 0.059 0.941 14 N -0.747 5.747 15 C -0.245 4.245 16 H 0.091 0.909 17 C 0.005 3.995 18 N -0.933 5.933 19 Si 0.884 3.116 20 H -0.284 1.284 21 H -0.277 1.277 22 H -0.291 1.291 23 C -0.140 4.140 24 C 0.148 3.852 25 H 0.082 0.918 26 C -0.142 4.142 27 O 0.117 5.883 28 N -0.394 5.394 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.189 0.811 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.361 0.639 40 H 0.260 0.740 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.051 0.949 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.662 7.116 9.574 24.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.189 6.189 4 C 0.010 3.990 5 C -0.181 4.181 6 C -0.119 4.119 7 C 0.386 3.614 8 O -0.387 6.387 9 N -0.318 5.318 10 C -0.030 4.030 11 C -0.191 4.191 12 C 0.073 3.927 13 H 0.077 0.923 14 N -0.389 5.389 15 C -0.374 4.374 16 H 0.109 0.891 17 C -0.191 4.191 18 N -0.580 5.580 19 Si 0.714 3.286 20 H -0.211 1.211 21 H -0.204 1.204 22 H -0.218 1.218 23 C -0.179 4.179 24 C 0.046 3.954 25 H 0.100 0.900 26 C -0.199 4.199 27 O 0.055 5.945 28 N -0.121 5.121 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.206 0.794 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.194 0.806 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.070 0.930 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.843 6.424 9.693 24.745 hybrid contribution -0.272 0.858 -1.357 1.628 sum -22.115 7.282 8.336 24.730 Atomic orbital electron populations 1.21798 0.92119 1.03281 1.03658 1.22851 0.95907 0.80454 1.02616 1.86207 1.13024 1.30391 1.89317 1.21807 0.85825 0.90430 1.00906 1.22136 0.90048 0.99209 1.06659 1.24305 0.96737 0.84312 1.06552 1.16709 0.80851 0.85862 0.78027 1.90915 1.84415 1.12787 1.50566 1.48212 1.05466 1.08595 1.69510 1.22416 1.02051 0.78107 1.00450 1.22652 0.98072 1.02769 0.95636 1.20164 0.90550 0.90218 0.91813 0.92291 1.42784 1.50021 1.36066 1.10040 1.19060 1.14927 1.04336 0.99119 0.89101 1.24675 0.98866 0.97849 0.97664 1.69696 1.30094 1.28288 1.29946 0.86566 0.77634 0.79765 0.84630 1.21067 1.20356 1.21791 1.22372 1.00063 0.98505 0.96980 1.21414 0.85278 0.89887 0.98809 0.90050 1.22235 1.00181 0.93223 1.04270 1.85118 1.21943 1.18769 1.68670 1.74000 0.90970 1.22741 1.24416 0.89883 0.91359 0.91321 0.91405 0.91463 0.79418 0.88462 0.90278 0.92186 0.89733 0.80620 0.93030 0.90087 0.91706 0.90416 0.93034 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.28 37.16 0.38 -0.46 16 2 C 0.06 0.47 6.38 37.16 0.24 0.70 16 3 O -0.28 -3.05 10.21 -18.88 -0.19 -3.25 16 4 C 0.21 2.48 8.00 -16.72 -0.13 2.35 16 5 C -0.16 -1.78 10.97 -38.77 -0.43 -2.21 16 6 C -0.05 -0.65 6.99 -36.36 -0.25 -0.91 16 7 C 0.60 7.86 7.50 -12.47 -0.09 7.76 16 8 O -0.51 -7.31 12.49 5.29 0.07 -7.25 16 9 N -0.59 -7.47 2.97 -166.45 -0.49 -7.96 16 10 C 0.09 1.16 6.35 -3.71 -0.02 1.14 16 11 C -0.15 -2.36 5.66 -26.61 -0.15 -2.51 16 12 C 0.18 3.18 2.73 -67.89 -0.19 3.00 16 13 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 14 N -0.75 -16.72 4.92 -53.39 -0.26 -16.98 16 15 C -0.24 -6.60 10.41 -15.06 -0.16 -6.75 16 16 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 17 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 18 N -0.93 -28.70 13.97 55.49 0.78 -27.93 16 19 Si 0.88 21.71 27.74 -169.99 -4.71 17.00 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 23 C -0.14 -2.03 4.84 -26.61 -0.13 -2.16 16 24 C 0.15 1.86 3.49 -67.60 -0.24 1.62 16 25 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 26 C -0.14 -1.72 7.61 37.16 0.28 -1.44 16 27 O 0.12 1.47 7.73 15.48 0.12 1.59 16 28 N -0.39 -5.05 11.50 30.47 0.35 -4.70 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.19 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.10 1.18 3.80 -54.81 -0.21 0.97 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 39 H 0.36 8.07 5.66 -40.82 -0.23 7.84 16 40 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.08 0.98 6.56 -51.93 -0.34 0.64 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.87 6.94 -51.93 -0.36 0.51 16 LS Contribution 362.13 15.07 5.46 5.46 Total: -1.00 -31.35 362.13 -6.53 -37.87 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.65 Total: 5.95 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -0.98 Total: 0.20 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: 0.37 Total: -57.57 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.01 Total: -8.90 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 17.00 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.35 -6.53 -37.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044679993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.856 kcal (2) G-P(sol) polarization free energy of solvation -31.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds