Wall clock time and date at job start Tue Mar 31 2020 14:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47492 * 2 1 4 4 C 1.35726 * 117.00197 * 180.02562 * 3 2 1 5 5 C 1.41859 * 126.78715 * 180.23589 * 4 3 2 6 6 C 1.36659 * 103.81411 * 180.11361 * 5 4 3 7 7 C 1.47534 * 126.88358 * 179.97438 * 6 5 4 8 8 O 1.21581 * 119.99783 * 5.70662 * 7 6 5 9 9 N 1.34778 * 120.00257 * 185.71018 * 7 6 5 10 10 C 1.46923 * 120.63046 * 354.00326 * 9 7 6 11 11 C 1.53192 * 108.77090 * 126.41680 * 10 9 7 12 12 C 1.53042 * 109.31485 * 54.64078 * 11 10 9 13 13 H 1.08998 * 109.46277 * 58.63639 * 12 11 10 14 14 N 1.46499 * 109.46098 * 178.61403 * 12 11 10 15 15 C 1.36935 * 119.99759 * 275.02074 * 14 12 11 16 16 H 1.07996 * 120.00486 * 0.02562 * 15 14 12 17 17 C 1.38814 * 119.99677 * 179.97438 * 15 14 12 18 18 N 1.31619 * 119.99707 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00433 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47084 * 89.99723 * 19 17 15 21 21 H 1.48501 * 109.46976 * 330.00249 * 19 17 15 22 22 H 1.48497 * 109.47349 * 209.99798 * 19 17 15 23 23 C 1.53040 * 109.52146 * 298.62518 * 12 11 10 24 24 C 1.46927 * 120.62867 * 174.03606 * 9 7 6 25 25 H 1.08996 * 109.59054 * 113.79842 * 24 9 7 26 26 C 1.52996 * 109.58909 * 353.36794 * 24 9 7 27 27 O 1.34668 * 106.23899 * 359.66780 * 6 5 4 28 28 N 1.20875 * 111.63465 * 0.22173 * 27 6 5 29 29 H 1.09002 * 109.47654 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47085 * 300.00243 * 1 2 3 31 31 H 1.09000 * 109.47397 * 60.00006 * 1 2 3 32 32 H 1.09003 * 109.47085 * 239.99757 * 2 1 3 33 33 H 1.09000 * 109.47397 * 119.99994 * 2 1 3 34 34 H 1.07999 * 128.09414 * 0.02762 * 5 4 3 35 35 H 1.08998 * 109.58736 * 6.63276 * 10 9 7 36 36 H 1.09000 * 109.58827 * 246.20257 * 10 9 7 37 37 H 1.08997 * 109.50162 * 294.68328 * 11 10 9 38 38 H 1.09003 * 109.49977 * 174.58630 * 11 10 9 39 39 H 0.96998 * 120.00338 * 95.02704 * 14 12 11 40 40 H 0.96999 * 120.00368 * 180.02562 * 18 17 15 41 41 H 1.09007 * 109.49619 * 181.32205 * 23 12 11 42 42 H 1.08997 * 109.50264 * 301.41641 * 23 12 11 43 43 H 1.08996 * 109.47585 * 66.19623 * 26 24 9 44 44 H 1.09004 * 109.47394 * 186.19740 * 26 24 9 45 45 H 1.08998 * 109.47245 * 306.19769 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3519 1.5250 -0.0005 5 6 4.0453 2.7626 0.0040 6 6 5.3625 2.3987 -0.0014 7 6 6.5303 3.3003 -0.0004 8 8 6.3715 4.5005 0.1105 9 7 7.7732 2.7934 -0.1224 10 6 7.9922 1.3406 -0.1256 11 6 8.7921 0.9654 -1.3771 12 6 10.0774 1.7948 -1.4238 13 1 10.6626 1.6089 -0.5232 14 7 10.8609 1.4149 -2.6020 15 6 11.7102 0.3424 -2.5427 16 1 11.8022 -0.2237 -1.6276 17 6 12.4521 -0.0179 -3.6592 18 7 13.2681 -1.0491 -3.6024 19 14 12.2926 0.9607 -5.2423 20 1 13.2871 2.0635 -5.2449 21 1 10.9237 1.5285 -5.3374 22 1 12.5400 0.0682 -6.4031 23 6 9.7240 3.2816 -1.5043 24 6 8.9349 3.6833 -0.2541 25 1 9.5706 3.5870 0.6260 26 6 8.4592 5.1309 -0.3909 27 8 5.3812 1.0521 -0.0010 28 7 4.2639 0.5909 -0.0004 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.6295 3.7593 0.0091 35 1 7.0313 0.8263 -0.1383 36 1 8.5510 1.0533 0.7650 37 1 8.1947 1.1697 -2.2656 38 1 9.0442 -0.0946 -1.3435 39 1 10.7781 1.9231 -3.4240 40 1 13.7868 -1.3007 -4.3824 41 1 10.6395 3.8706 -1.5612 42 1 9.1178 3.4640 -2.3916 43 1 7.9828 5.4462 0.5373 44 1 9.3131 5.7760 -0.5984 45 1 7.7428 5.2022 -1.2093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044679993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:15 Heat of formation + Delta-G solvation = 13.118321 kcal Electronic energy + Delta-G solvation = -27913.077911 eV Core-core repulsion = 23935.419170 eV Total energy + Delta-G solvation = -3977.658741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.15903 -41.62717 -40.10246 -38.94837 -36.40100 -34.65999 -34.48162 -33.82682 -32.57910 -32.12981 -31.51665 -28.51920 -26.23969 -25.55488 -24.76583 -24.34792 -23.95532 -22.59749 -21.77938 -21.21972 -19.67978 -19.16098 -18.97727 -18.23216 -17.35244 -17.04380 -17.01084 -16.69769 -16.35441 -15.91434 -15.73898 -15.28421 -15.22657 -14.86117 -14.73363 -14.42014 -14.26093 -14.08767 -13.84663 -13.54151 -13.37590 -13.13862 -12.96485 -12.93899 -12.66376 -12.59036 -12.34038 -12.14932 -12.13507 -12.01936 -11.90091 -11.76222 -11.40372 -11.00274 -10.91413 -10.55702 -10.46540 -9.75948 -9.29070 -7.99327 -5.32189 -0.40377 0.94571 1.33652 1.39693 1.41856 1.46903 1.49009 1.79954 2.08428 2.50553 2.91595 3.28128 3.32195 3.49500 3.62087 3.86265 3.91092 3.91648 4.01703 4.06171 4.10121 4.23706 4.26979 4.33057 4.51682 4.52739 4.57939 4.65886 4.78602 4.83348 4.84880 4.90429 4.98513 5.06281 5.14727 5.16226 5.24452 5.40019 5.47630 5.63883 5.81390 5.86374 6.12403 6.24889 6.72022 6.98377 7.11037 7.87677 8.05513 9.22060 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015043 B = 0.003049 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.892245 B = 9182.057186 C =10402.151184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 O -0.288 6.288 4 C 0.205 3.795 5 C -0.149 4.149 6 C -0.062 4.062 7 C 0.605 3.395 8 O -0.521 6.521 9 N -0.587 5.587 10 C 0.103 3.897 11 C -0.141 4.141 12 C 0.175 3.825 13 H 0.055 0.945 14 N -0.752 5.752 15 C -0.222 4.222 16 H 0.062 0.938 17 C -0.065 4.065 18 N -0.984 5.984 19 Si 0.951 3.049 20 H -0.279 1.279 21 H -0.255 1.255 22 H -0.301 1.301 23 C -0.130 4.130 24 C 0.151 3.849 25 H 0.097 0.903 26 C -0.132 4.132 27 O 0.112 5.888 28 N -0.407 5.407 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.207 0.793 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.364 0.636 40 H 0.256 0.744 41 H 0.087 0.913 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.560 8.852 9.856 27.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 O -0.195 6.195 4 C 0.007 3.993 5 C -0.172 4.172 6 C -0.128 4.128 7 C 0.390 3.610 8 O -0.399 6.399 9 N -0.318 5.318 10 C -0.020 4.020 11 C -0.182 4.182 12 C 0.067 3.933 13 H 0.073 0.927 14 N -0.394 5.394 15 C -0.353 4.353 16 H 0.080 0.920 17 C -0.257 4.257 18 N -0.635 5.635 19 Si 0.779 3.221 20 H -0.205 1.205 21 H -0.179 1.179 22 H -0.228 1.228 23 C -0.168 4.168 24 C 0.049 3.951 25 H 0.115 0.885 26 C -0.190 4.190 27 O 0.050 5.950 28 N -0.135 5.135 29 H 0.121 0.879 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.224 0.776 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.196 0.804 40 H 0.065 0.935 41 H 0.105 0.895 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.796 8.202 10.008 27.086 hybrid contribution 0.230 0.285 -1.334 1.383 sum -23.566 8.486 8.674 26.506 Atomic orbital electron populations 1.21824 0.89975 1.04644 1.03829 1.23101 0.97587 0.79362 1.02474 1.86225 1.12315 1.31913 1.89092 1.21993 0.86309 0.90516 1.00461 1.22407 0.89623 0.99837 1.05297 1.24226 0.96850 0.84235 1.07447 1.16713 0.80923 0.85745 0.77600 1.90916 1.84625 1.13277 1.51110 1.48212 1.05614 1.08490 1.69519 1.22305 1.02124 0.78261 0.99261 1.22443 0.97451 1.01175 0.97152 1.20422 0.90498 0.92638 0.89744 0.92710 1.42830 1.49974 1.34861 1.11732 1.19033 1.14250 1.04346 0.97662 0.91987 1.25451 0.99409 0.99378 1.01426 1.69873 1.32056 1.30784 1.30819 0.85468 0.78730 0.78094 0.79801 1.20484 1.17943 1.22800 1.22249 1.00642 0.95956 0.98000 1.21445 0.85181 0.90147 0.98326 0.88494 1.22121 1.00402 0.92901 1.03539 1.85072 1.21974 1.18918 1.69030 1.73984 0.91210 1.23226 1.25085 0.87912 0.91043 0.91251 0.91755 0.91416 0.77604 0.87693 0.88675 0.92848 0.91725 0.80356 0.93525 0.89452 0.91957 0.90763 0.91467 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 71.98 0.74 -0.62 16 2 C 0.05 0.75 6.38 71.98 0.46 1.21 16 3 O -0.29 -5.85 10.21 -90.49 -0.92 -6.78 16 4 C 0.20 4.62 8.00 85.78 0.69 5.30 16 5 C -0.15 -3.10 10.97 22.80 0.25 -2.85 16 6 C -0.06 -1.42 6.99 24.35 0.17 -1.25 16 7 C 0.60 14.64 7.50 86.69 0.65 15.29 16 8 O -0.52 -13.88 12.49 -3.97 -0.05 -13.93 16 9 N -0.59 -13.75 2.97 -798.78 -2.37 -16.12 16 10 C 0.10 2.43 6.35 86.36 0.55 2.98 16 11 C -0.14 -4.33 5.66 30.67 0.17 -4.16 16 12 C 0.17 5.91 2.73 45.02 0.12 6.03 16 13 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 14 N -0.75 -33.00 4.92 -322.82 -1.59 -34.59 16 15 C -0.22 -12.09 10.41 84.03 0.87 -11.21 16 16 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 17 C -0.07 -3.77 5.50 84.86 0.47 -3.31 16 18 N -0.98 -62.24 13.97 21.65 0.30 -61.93 16 19 Si 0.95 44.92 27.74 68.60 1.90 46.82 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.25 -10.91 6.52 99.48 0.65 -10.26 16 22 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 23 C -0.13 -3.47 4.84 30.67 0.15 -3.32 16 24 C 0.15 3.41 3.49 44.97 0.16 3.57 16 25 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 26 C -0.13 -2.87 7.61 71.98 0.55 -2.32 16 27 O 0.11 2.66 7.73 65.58 0.51 3.17 16 28 N -0.41 -10.00 11.50 -172.01 -1.98 -11.97 16 29 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 34 H 0.21 3.38 8.06 -2.91 -0.02 3.35 16 35 H 0.11 2.40 3.80 -47.96 -0.18 2.22 16 36 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.36 15.58 5.66 -92.71 -0.52 15.06 16 40 H 0.26 15.52 8.31 -92.71 -0.77 14.74 16 41 H 0.09 2.25 8.14 -2.38 -0.02 2.24 16 42 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.07 1.70 6.56 -2.39 -0.02 1.68 16 44 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.05 1.27 6.94 -2.39 -0.02 1.25 16 Total: -1.00 -67.73 362.13 2.04 -65.69 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.25 Total: 24.31 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 5.99 Total: 5.34 kcal Atomic # 7 Polarization: -118.98 SS G_CDS: -5.64 Total: -124.62 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.47 Total: -17.54 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.90 Total: 46.82 kcal Total: -67.73 2.04 -65.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044679993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.806 kcal (2) G-P(sol) polarization free energy of solvation -67.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds