Wall clock time and date at job start Tue Mar 31 2020 14:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46963 * 2 1 4 4 C 1.35727 * 116.99844 * 179.97438 * 3 2 1 5 5 C 1.41855 * 126.79003 * 180.02562 * 4 3 2 6 6 C 1.36655 * 103.81458 * 180.02562 * 5 4 3 7 7 C 1.47551 * 126.87953 * 180.02562 * 6 5 4 8 8 O 1.21584 * 119.99395 * 7.14311 * 7 6 5 9 9 N 1.34771 * 120.00003 * 187.14578 * 7 6 5 10 10 C 1.46924 * 120.63443 * 6.51669 * 9 7 6 11 11 C 1.53192 * 108.78005 * 233.63620 * 10 9 7 12 12 C 1.53049 * 109.30920 * 305.36370 * 11 10 9 13 13 H 1.09000 * 109.45654 * 181.38533 * 12 11 10 14 14 N 1.46495 * 109.45673 * 301.35785 * 12 11 10 15 15 C 1.36933 * 120.00020 * 274.99766 * 14 12 11 16 16 H 1.08000 * 120.00149 * 0.02562 * 15 14 12 17 17 C 1.38814 * 120.00328 * 180.02562 * 15 14 12 18 18 N 1.31618 * 119.99716 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00266 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47490 * 59.99693 * 19 17 15 21 21 H 1.48504 * 109.47377 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47474 * 299.99531 * 19 17 15 23 23 C 1.53043 * 109.53814 * 61.36298 * 12 11 10 24 24 C 1.46928 * 120.63118 * 186.54313 * 9 7 6 25 25 H 1.08992 * 109.58909 * 246.15637 * 24 9 7 26 26 C 1.53003 * 109.70182 * 6.51099 * 24 9 7 27 27 O 1.34658 * 106.24486 * 0.26591 * 6 5 4 28 28 N 1.20881 * 111.62829 * 359.51861 * 27 6 5 29 29 H 1.09006 * 109.47126 * 59.99681 * 1 2 3 30 30 H 1.08999 * 109.47029 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47193 * 299.99761 * 1 2 3 32 32 H 1.08998 * 109.47193 * 240.00239 * 2 1 3 33 33 H 1.08993 * 109.47452 * 120.00373 * 2 1 3 34 34 H 1.08005 * 128.08705 * 359.97438 * 5 4 3 35 35 H 1.08999 * 109.58713 * 113.84568 * 10 9 7 36 36 H 1.09000 * 109.58613 * 353.41792 * 10 9 7 37 37 H 1.09004 * 109.49593 * 65.30930 * 11 10 9 38 38 H 1.08998 * 109.49949 * 185.41600 * 11 10 9 39 39 H 0.97000 * 120.00008 * 95.00388 * 14 12 11 40 40 H 0.97002 * 120.00176 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.49317 * 58.58291 * 23 12 11 42 42 H 1.08997 * 109.49591 * 178.64965 * 23 12 11 43 43 H 1.08998 * 109.47470 * 173.22469 * 26 24 9 44 44 H 1.09010 * 109.47005 * 293.22116 * 26 24 9 45 45 H 1.08994 * 109.47464 * 53.21921 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5252 0.0005 5 6 4.0453 2.7627 0.0012 6 6 5.3624 2.3988 0.0009 7 6 6.5303 3.3005 0.0019 8 8 6.3728 4.4989 0.1339 9 7 7.7715 2.7959 -0.1437 10 6 7.9699 1.3719 -0.4461 11 6 8.9256 0.7757 0.5922 12 6 10.2163 1.5976 0.6228 13 1 10.9079 1.1608 1.3432 14 7 10.8297 1.5925 -0.7076 15 6 11.6502 0.5611 -1.0793 16 1 11.8448 -0.2488 -0.3918 17 6 12.2319 0.5565 -2.3396 18 7 11.9944 1.5432 -3.1776 19 14 13.3506 -0.8508 -2.8469 20 1 12.5939 -2.1277 -2.7963 21 1 13.8399 -0.6204 -4.2300 22 1 14.5069 -0.9236 -1.9180 23 6 9.8967 3.0375 1.0310 24 6 8.9519 3.6592 -0.0023 25 1 9.4624 3.7402 -0.9619 26 6 8.5207 5.0497 0.4683 27 8 5.3812 1.0523 -0.0058 28 7 4.2638 0.5911 0.0000 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.6293 3.7595 0.0009 35 1 8.4003 1.2664 -1.4420 36 1 7.0128 0.8522 -0.4025 37 1 8.4556 0.7998 1.5754 38 1 9.1570 -0.2551 0.3241 39 1 10.6547 2.3198 -1.3251 40 1 12.4011 1.5403 -4.0582 41 1 9.4175 3.0402 2.0100 42 1 10.8192 3.6162 1.0759 43 1 9.4041 5.6494 0.6873 44 1 7.9380 5.5340 -0.3154 45 1 7.9127 4.9565 1.3680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044679996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:24 Heat of formation + Delta-G solvation = 13.350381 kcal Electronic energy + Delta-G solvation = -28304.143630 eV Core-core repulsion = 24326.494952 eV Total energy + Delta-G solvation = -3977.648678 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.14505 -41.63103 -40.09525 -38.99128 -35.99081 -34.63504 -34.44686 -33.67964 -32.53725 -32.09771 -30.85390 -28.47068 -26.15794 -25.62796 -25.03952 -24.65994 -23.95893 -22.84041 -21.75306 -20.45802 -19.24263 -19.20049 -18.80514 -18.17064 -17.34744 -17.06064 -16.93980 -16.75081 -16.20344 -15.69992 -15.63900 -15.43993 -15.23710 -14.96405 -14.66050 -14.36990 -14.19177 -14.06644 -13.55341 -13.47900 -13.34985 -12.99159 -12.91020 -12.78892 -12.64063 -12.47357 -12.33682 -12.15501 -12.14332 -11.97618 -11.88828 -11.58985 -11.41201 -10.99380 -10.85826 -10.52611 -10.45602 -9.65579 -8.93001 -7.87682 -5.14410 -0.40423 0.95000 1.35397 1.47610 1.51584 1.52633 1.58404 1.81114 2.11903 2.61292 2.92650 3.30286 3.46134 3.62646 3.89689 3.91705 3.92599 3.94656 4.04219 4.08323 4.11453 4.26719 4.34000 4.39678 4.48702 4.53081 4.63542 4.79390 4.83463 4.85825 4.91283 4.95478 5.06326 5.13927 5.15566 5.22262 5.28659 5.36417 5.42836 5.60812 5.66365 5.86673 6.19836 6.34514 6.73309 6.98255 7.41863 8.17912 8.40870 9.35392 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015135 B = 0.003259 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.625115 B = 8589.695425 C = 9835.488103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 O -0.287 6.287 4 C 0.207 3.793 5 C -0.149 4.149 6 C -0.060 4.060 7 C 0.601 3.399 8 O -0.525 6.525 9 N -0.581 5.581 10 C 0.109 3.891 11 C -0.138 4.138 12 C 0.165 3.835 13 H 0.053 0.947 14 N -0.730 5.730 15 C -0.230 4.230 16 H 0.077 0.923 17 C -0.074 4.074 18 N -0.969 5.969 19 Si 0.964 3.036 20 H -0.280 1.280 21 H -0.302 1.302 22 H -0.281 1.281 23 C -0.123 4.123 24 C 0.146 3.854 25 H 0.061 0.939 26 C -0.128 4.128 27 O 0.110 5.890 28 N -0.406 5.406 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.208 0.792 35 H 0.059 0.941 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.374 0.626 40 H 0.248 0.752 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.729 0.412 9.871 22.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 O -0.194 6.194 4 C 0.009 3.991 5 C -0.171 4.171 6 C -0.125 4.125 7 C 0.386 3.614 8 O -0.403 6.403 9 N -0.312 5.312 10 C -0.013 4.013 11 C -0.179 4.179 12 C 0.056 3.944 13 H 0.071 0.929 14 N -0.371 5.371 15 C -0.362 4.362 16 H 0.094 0.906 17 C -0.266 4.266 18 N -0.620 5.620 19 Si 0.795 3.205 20 H -0.206 1.206 21 H -0.229 1.229 22 H -0.207 1.207 23 C -0.162 4.162 24 C 0.044 3.956 25 H 0.079 0.921 26 C -0.185 4.185 27 O 0.048 5.952 28 N -0.134 5.134 29 H 0.088 0.912 30 H 0.122 0.878 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.225 0.775 35 H 0.078 0.922 36 H 0.121 0.879 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.207 0.793 40 H 0.057 0.943 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.966 -0.233 9.958 22.313 hybrid contribution 0.694 -0.139 -1.057 1.271 sum -19.273 -0.372 8.902 21.233 Atomic orbital electron populations 1.21824 0.89903 1.04664 1.03836 1.23114 0.97625 0.79348 1.02495 1.86230 1.12163 1.31959 1.89087 1.21953 0.86337 0.90423 1.00342 1.22402 0.89466 0.99929 1.05310 1.24164 0.96755 0.84213 1.07394 1.16774 0.80940 0.85856 0.77803 1.90900 1.84473 1.13277 1.51661 1.48136 1.04889 1.11071 1.67104 1.22065 1.00839 0.78764 0.99618 1.22375 0.96856 1.00245 0.98420 1.20469 0.92633 0.94105 0.87160 0.92887 1.42653 1.55445 1.25725 1.13317 1.19557 1.18826 1.00365 0.97413 0.90559 1.25412 1.03295 1.00529 0.97377 1.69790 1.49975 1.34309 1.07946 0.85346 0.79208 0.79589 0.76406 1.20640 1.22877 1.20707 1.22164 0.99163 0.96231 0.98608 1.21310 0.84400 0.90618 0.99246 0.92144 1.22093 1.00499 0.93556 1.02386 1.85087 1.22130 1.18906 1.69047 1.73976 0.91096 1.23174 1.25173 0.91236 0.87850 0.91053 0.91707 0.91432 0.77542 0.92230 0.87914 0.90419 0.91481 0.79299 0.94340 0.89428 0.90305 0.91681 0.91761 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.28 71.98 0.74 -0.72 16 2 C 0.05 0.79 6.38 71.98 0.46 1.25 16 3 O -0.29 -6.23 10.21 -90.50 -0.92 -7.16 16 4 C 0.21 5.09 8.00 85.78 0.69 5.78 16 5 C -0.15 -3.49 10.98 22.79 0.25 -3.24 16 6 C -0.06 -1.60 6.95 24.36 0.17 -1.43 16 7 C 0.60 17.75 7.49 86.70 0.65 18.40 16 8 O -0.52 -16.60 12.52 -3.98 -0.05 -16.65 16 9 N -0.58 -17.80 2.97 -798.76 -2.37 -20.17 16 10 C 0.11 3.48 6.08 86.36 0.52 4.01 16 11 C -0.14 -4.32 5.78 30.67 0.18 -4.15 16 12 C 0.16 5.82 3.10 45.02 0.14 5.96 16 13 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 14 N -0.73 -33.55 4.31 -322.80 -1.39 -34.94 16 15 C -0.23 -11.92 9.93 84.03 0.83 -11.09 16 16 H 0.08 3.80 7.83 -2.91 -0.02 3.77 16 17 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 18 N -0.97 -57.51 13.06 21.65 0.28 -57.23 16 19 Si 0.96 45.03 29.55 68.60 2.03 47.06 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 21 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 23 C -0.12 -3.64 5.07 30.67 0.16 -3.48 16 24 C 0.15 4.56 3.19 44.97 0.14 4.71 16 25 H 0.06 2.23 6.64 -2.39 -0.02 2.21 16 26 C -0.13 -3.57 7.61 71.98 0.55 -3.02 16 27 O 0.11 2.99 7.81 65.67 0.51 3.50 16 28 N -0.41 -10.89 11.50 -172.00 -1.98 -12.86 16 29 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.21 3.92 8.06 -2.91 -0.02 3.90 16 35 H 0.06 2.30 7.74 -2.39 -0.02 2.28 16 36 H 0.10 2.99 3.88 -39.33 -0.15 2.84 16 37 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 38 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.37 18.68 6.06 -92.71 -0.56 18.11 16 40 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 41 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.08 2.34 8.14 -2.39 -0.02 2.33 16 43 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.06 1.95 6.60 -2.38 -0.02 1.94 16 45 H 0.06 1.76 6.91 -2.39 -0.02 1.75 16 Total: -1.00 -62.33 361.10 2.36 -59.97 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 0.31 Total: 29.13 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 5.94 Total: 9.35 kcal Atomic # 7 Polarization: -119.74 SS G_CDS: -5.46 Total: -125.20 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.46 Total: -20.30 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -62.33 2.36 -59.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044679996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.319 kcal (2) G-P(sol) polarization free energy of solvation -62.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds