Wall clock time and date at job start Tue Mar 31 2020 14:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.47152 * 2 1 4 4 C 1.35349 * 116.99852 * 179.97438 * 3 2 1 5 5 N 1.30559 * 125.44749 * 180.34662 * 4 3 2 6 6 C 1.36324 * 108.38447 * 180.16795 * 5 4 3 7 7 C 1.47367 * 126.41531 * 179.82989 * 6 5 4 8 8 O 1.21619 * 120.00362 * 179.69055 * 7 6 5 9 9 N 1.34784 * 119.99753 * 359.68678 * 7 6 5 10 10 C 1.46496 * 119.99710 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.49423 * 325.03953 * 10 9 7 12 12 C 1.52572 * 109.48536 * 204.99997 * 10 9 7 13 13 C 1.47094 * 114.32512 * 155.02386 * 12 10 9 14 14 C 1.54860 * 110.32475 * 62.79848 * 13 12 10 15 15 N 1.44578 * 109.58192 * 288.74802 * 14 13 12 16 16 C 1.36932 * 118.64100 * 270.71494 * 15 14 13 17 17 H 1.08002 * 120.00236 * 139.22301 * 16 15 14 18 18 C 1.38811 * 120.00278 * 319.21880 * 16 15 14 19 19 N 1.31612 * 120.00423 * 156.28159 * 18 16 15 20 20 Si 1.86801 * 119.99709 * 336.28658 * 18 16 15 21 21 H 1.48495 * 109.47072 * 95.53160 * 20 18 16 22 22 H 1.48500 * 109.47205 * 215.53150 * 20 18 16 23 23 H 1.48505 * 109.47262 * 335.52860 * 20 18 16 24 24 C 1.47576 * 122.73249 * 90.75682 * 15 14 13 25 25 C 1.50877 * 109.49256 * 85.11458 * 10 9 7 26 26 C 1.35914 * 107.17379 * 359.56276 * 6 5 4 27 27 O 1.34197 * 125.44964 * 0.03247 * 4 3 2 28 28 H 1.08998 * 109.46909 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46914 * 299.99633 * 1 2 3 30 30 H 1.09003 * 109.46927 * 59.99517 * 1 2 3 31 31 H 1.09002 * 109.46708 * 240.00773 * 2 1 3 32 32 H 1.08995 * 109.47502 * 120.00741 * 2 1 3 33 33 H 0.96995 * 119.99500 * 359.97438 * 9 7 6 34 34 H 1.09004 * 108.51550 * 33.76718 * 12 10 9 35 35 H 1.09000 * 108.51307 * 276.27363 * 12 10 9 36 36 H 1.09007 * 109.32561 * 302.53758 * 13 12 10 37 37 H 1.09002 * 109.19157 * 182.97655 * 13 12 10 38 38 H 1.09007 * 109.44498 * 48.77326 * 14 13 12 39 39 H 1.09001 * 109.45158 * 168.71678 * 14 13 12 40 40 H 0.96998 * 120.00702 * 180.02562 * 19 18 16 41 41 H 1.08998 * 108.94894 * 197.15819 * 24 15 14 42 42 H 1.09005 * 108.89774 * 78.46616 * 24 15 14 43 43 H 1.08996 * 109.36692 * 332.04143 * 25 10 9 44 44 H 1.09008 * 109.36494 * 91.78282 * 25 10 9 45 45 H 1.08004 * 126.45597 * 180.25892 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3482 1.5246 0.0005 5 7 3.9595 2.6782 0.0071 6 6 5.3039 2.4524 0.0014 7 6 6.3631 3.4770 0.0022 8 8 7.5325 3.1428 0.0024 9 7 6.0359 4.7845 0.0026 10 6 7.0888 5.8030 0.0027 11 1 7.9358 5.4505 0.5914 12 6 6.5483 7.0937 0.6110 13 6 7.5786 7.9666 1.1941 14 6 8.5637 8.4425 0.0981 15 7 9.3934 7.3354 -0.3216 16 6 10.5680 7.1063 0.3439 17 1 10.8698 6.0953 0.5745 18 6 11.3711 8.1736 0.7220 19 7 12.2150 8.0399 1.7230 20 14 11.2539 9.7996 -0.1900 21 1 10.3324 10.7094 0.5368 22 1 12.6006 10.4201 -0.2706 23 1 10.7356 9.5619 -1.5612 24 6 9.0275 6.4423 -1.4380 25 6 7.5347 6.0664 -1.4144 26 6 5.4846 1.1053 0.0011 27 8 4.2630 0.5428 0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 5.1032 5.0509 0.0019 34 1 5.8317 6.8353 1.3907 35 1 6.0234 7.6493 -0.1662 36 1 8.1276 7.4161 1.9582 37 1 7.0986 8.8332 1.6488 38 1 8.0014 8.8191 -0.7565 39 1 9.1938 9.2376 0.4968 40 1 12.7759 8.7857 1.9876 41 1 9.6228 5.5316 -1.3724 42 1 9.2512 6.9441 -2.3794 43 1 7.3781 5.1704 -2.0150 44 1 6.9505 6.8872 -1.8305 45 1 6.4309 0.5847 0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052526289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:51 Heat of formation + Delta-G solvation = -19.277512 kcal Electronic energy + Delta-G solvation = -27567.725305 eV Core-core repulsion = 23588.661775 eV Total energy + Delta-G solvation = -3979.063529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.70201 -39.78533 -39.28436 -37.75952 -35.18707 -34.78904 -32.58290 -32.40423 -31.74301 -30.55979 -29.67513 -26.28305 -25.00894 -24.22373 -23.67357 -22.99684 -22.41119 -20.62777 -20.36083 -19.30309 -19.08368 -17.89228 -17.35325 -16.59942 -16.53658 -16.06234 -16.00727 -15.36601 -15.30385 -14.85212 -14.35951 -14.09715 -13.71164 -13.57983 -13.43381 -13.29713 -13.09452 -12.85492 -12.71835 -12.31752 -12.11341 -11.92826 -11.75613 -11.55006 -11.19755 -11.15610 -11.04265 -10.62628 -10.51100 -10.25204 -10.11898 -10.02242 -9.84755 -9.63388 -9.49099 -9.00417 -8.76066 -8.40080 -6.65370 -5.92177 -3.33875 0.91989 1.56810 1.84536 2.40120 3.22049 3.34006 3.37521 3.52477 3.59578 4.23985 4.25125 4.27286 4.57186 4.60409 4.65126 4.84238 5.07212 5.12207 5.14501 5.14888 5.24989 5.37482 5.40804 5.43881 5.56766 5.76146 5.86740 5.89215 6.08074 6.21326 6.32408 6.34214 6.40093 6.52997 6.59877 6.62134 6.77566 6.88248 6.91592 6.96103 7.15648 7.22655 7.72148 8.19256 8.32715 8.51861 9.15375 9.81893 10.20441 11.23430 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.031948 B = 0.002480 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.224786 B =11286.744823 C =11654.021957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.246 6.246 4 C 0.380 3.620 5 N -0.456 5.456 6 C -0.042 4.042 7 C 0.597 3.403 8 O -0.523 6.523 9 N -0.707 5.707 10 C 0.152 3.848 11 H 0.107 0.893 12 C -0.108 4.108 13 C -0.141 4.141 14 C 0.146 3.854 15 N -0.604 5.604 16 C -0.270 4.270 17 H 0.077 0.923 18 C 0.038 3.962 19 N -0.898 5.898 20 Si 0.875 3.125 21 H -0.286 1.286 22 H -0.302 1.302 23 H -0.270 1.270 24 C 0.151 3.849 25 C -0.139 4.139 26 C 0.000 4.000 27 O -0.227 6.227 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.403 0.597 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.034 0.966 39 H 0.053 0.947 40 H 0.262 0.738 41 H 0.061 0.939 42 H 0.019 0.981 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.606 -15.220 -4.143 28.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.154 6.154 4 C 0.134 3.866 5 N -0.202 5.202 6 C -0.161 4.161 7 C 0.381 3.619 8 O -0.399 6.399 9 N -0.356 5.356 10 C 0.049 3.951 11 H 0.125 0.875 12 C -0.146 4.146 13 C -0.181 4.181 14 C 0.020 3.980 15 N -0.327 5.327 16 C -0.399 4.399 17 H 0.094 0.906 18 C -0.163 4.163 19 N -0.539 5.539 20 Si 0.705 3.295 21 H -0.214 1.214 22 H -0.230 1.230 23 H -0.195 1.195 24 C 0.026 3.974 25 C -0.179 4.179 26 C -0.072 4.072 27 O -0.118 6.118 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.238 0.762 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.037 0.963 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -23.178 -14.728 -4.062 27.760 hybrid contribution -0.237 0.237 -0.429 0.544 sum -23.415 -14.490 -4.491 27.900 Atomic orbital electron populations 1.21813 0.91217 1.03665 1.04232 1.23058 0.96853 0.79382 1.03087 1.86378 1.09002 1.30802 1.89253 1.23287 0.83446 0.81660 0.98213 1.71107 1.04022 1.21521 1.23518 1.21859 0.90145 0.94233 1.09888 1.16643 0.86090 0.81913 0.77241 1.90901 1.17650 1.81237 1.50150 1.46126 1.11114 1.05117 1.73275 1.20591 0.90036 0.86826 0.97673 0.87485 1.20590 0.98877 0.95221 0.99877 1.21319 0.97439 0.98545 1.00841 1.21094 0.92030 0.90796 0.94085 1.43899 1.21072 1.32733 1.34976 1.18826 0.96243 0.94336 1.30468 0.90590 1.25529 0.95865 0.97959 0.96902 1.69900 1.26531 1.32180 1.25311 0.86952 0.75752 0.84823 0.81987 1.21431 1.23017 1.19499 1.21189 0.91666 0.94486 0.90057 1.22234 0.99158 1.00563 0.95943 1.25019 0.85749 0.92972 1.03463 1.84383 1.16295 1.39155 1.71965 0.89430 0.90934 0.90952 0.90784 0.90770 0.76228 0.92865 0.92734 0.90816 0.92816 0.94762 0.92928 0.92833 0.92050 0.96321 0.91994 0.92635 0.74649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 10.28 37.16 0.38 -0.12 16 2 C 0.05 0.27 6.38 37.16 0.24 0.50 16 3 O -0.25 -2.29 10.19 -40.97 -0.42 -2.71 16 4 C 0.38 4.27 8.98 52.22 0.47 4.74 16 5 N -0.46 -6.03 11.10 -11.72 -0.13 -6.16 16 6 C -0.04 -0.57 6.99 -82.99 -0.58 -1.15 16 7 C 0.60 9.55 7.63 -12.54 -0.10 9.46 16 8 O -0.52 -10.04 16.55 5.26 0.09 -9.95 16 9 N -0.71 -10.66 4.93 -56.16 -0.28 -10.94 16 10 C 0.15 2.62 2.06 -69.22 -0.14 2.48 16 11 H 0.11 2.30 6.92 -51.93 -0.36 1.94 16 12 C -0.11 -1.72 4.69 -29.78 -0.14 -1.86 16 13 C -0.14 -2.65 5.74 -28.58 -0.16 -2.81 16 14 C 0.15 3.18 4.52 -4.09 -0.02 3.16 16 15 N -0.60 -14.42 1.79 -172.11 -0.31 -14.73 16 16 C -0.27 -7.63 9.65 -15.06 -0.15 -7.77 16 17 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 18 C 0.04 1.11 5.22 -17.43 -0.09 1.01 16 19 N -0.90 -27.69 13.97 55.49 0.78 -26.91 16 20 Si 0.87 22.46 25.28 -169.99 -4.30 18.16 16 21 H -0.29 -7.11 6.70 56.52 0.38 -6.73 16 22 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 23 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.15 3.16 6.24 -2.96 -0.02 3.14 16 25 C -0.14 -2.40 5.39 -27.30 -0.15 -2.55 16 26 C 0.00 0.00 11.93 29.90 0.36 0.36 16 27 O -0.23 -2.27 10.20 -17.74 -0.18 -2.45 16 28 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.40 5.32 8.33 -40.82 -0.34 4.98 16 34 H 0.05 0.77 8.04 -51.93 -0.42 0.35 16 35 H 0.05 0.79 7.36 -51.93 -0.38 0.40 16 36 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.03 0.67 8.07 -51.92 -0.42 0.25 16 39 H 0.05 1.26 3.60 -51.93 -0.19 1.07 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.06 1.35 7.89 -51.93 -0.41 0.94 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 1.04 7.85 -51.93 -0.41 0.63 16 44 H 0.05 0.88 7.32 -51.92 -0.38 0.50 16 45 H 0.24 1.82 8.06 -52.48 -0.42 1.40 16 LS Contribution 365.54 15.07 5.51 5.51 Total: -1.00 -33.77 365.54 -6.03 -39.79 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.69 Total: 1.80 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -0.10 Total: 8.59 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: 0.06 Total: -58.74 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.51 Total: -15.11 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.30 Total: 18.16 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.77 -6.03 -39.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052526289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.515 kcal (2) G-P(sol) polarization free energy of solvation -33.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds