Wall clock time and date at job start Tue Mar 31 2020 14:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.47152 * 2 1 4 4 C 1.35349 * 116.99852 * 179.97438 * 3 2 1 5 5 N 1.30559 * 125.44749 * 180.34662 * 4 3 2 6 6 C 1.36324 * 108.38447 * 180.16795 * 5 4 3 7 7 C 1.47367 * 126.41531 * 179.82989 * 6 5 4 8 8 O 1.21619 * 120.00362 * 179.69055 * 7 6 5 9 9 N 1.34784 * 119.99753 * 359.68678 * 7 6 5 10 10 C 1.46496 * 119.99710 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.49423 * 325.03953 * 10 9 7 12 12 C 1.52572 * 109.48536 * 204.99997 * 10 9 7 13 13 C 1.47094 * 114.32512 * 155.02386 * 12 10 9 14 14 C 1.54860 * 110.32475 * 62.79848 * 13 12 10 15 15 N 1.44578 * 109.58192 * 288.74802 * 14 13 12 16 16 C 1.36932 * 118.64100 * 270.71494 * 15 14 13 17 17 H 1.08002 * 120.00236 * 139.22301 * 16 15 14 18 18 C 1.38811 * 120.00278 * 319.21880 * 16 15 14 19 19 N 1.31612 * 120.00423 * 156.28159 * 18 16 15 20 20 Si 1.86801 * 119.99709 * 336.28658 * 18 16 15 21 21 H 1.48495 * 109.47072 * 95.53160 * 20 18 16 22 22 H 1.48500 * 109.47205 * 215.53150 * 20 18 16 23 23 H 1.48505 * 109.47262 * 335.52860 * 20 18 16 24 24 C 1.47576 * 122.73249 * 90.75682 * 15 14 13 25 25 C 1.50877 * 109.49256 * 85.11458 * 10 9 7 26 26 C 1.35914 * 107.17379 * 359.56276 * 6 5 4 27 27 O 1.34197 * 125.44964 * 0.03247 * 4 3 2 28 28 H 1.08998 * 109.46909 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46914 * 299.99633 * 1 2 3 30 30 H 1.09003 * 109.46927 * 59.99517 * 1 2 3 31 31 H 1.09002 * 109.46708 * 240.00773 * 2 1 3 32 32 H 1.08995 * 109.47502 * 120.00741 * 2 1 3 33 33 H 0.96995 * 119.99500 * 359.97438 * 9 7 6 34 34 H 1.09004 * 108.51550 * 33.76718 * 12 10 9 35 35 H 1.09000 * 108.51307 * 276.27363 * 12 10 9 36 36 H 1.09007 * 109.32561 * 302.53758 * 13 12 10 37 37 H 1.09002 * 109.19157 * 182.97655 * 13 12 10 38 38 H 1.09007 * 109.44498 * 48.77326 * 14 13 12 39 39 H 1.09001 * 109.45158 * 168.71678 * 14 13 12 40 40 H 0.96998 * 120.00702 * 180.02562 * 19 18 16 41 41 H 1.08998 * 108.94894 * 197.15819 * 24 15 14 42 42 H 1.09005 * 108.89774 * 78.46616 * 24 15 14 43 43 H 1.08996 * 109.36692 * 332.04143 * 25 10 9 44 44 H 1.09008 * 109.36494 * 91.78282 * 25 10 9 45 45 H 1.08004 * 126.45597 * 180.25892 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3482 1.5246 0.0005 5 7 3.9595 2.6782 0.0071 6 6 5.3039 2.4524 0.0014 7 6 6.3631 3.4770 0.0022 8 8 7.5325 3.1428 0.0024 9 7 6.0359 4.7845 0.0026 10 6 7.0888 5.8030 0.0027 11 1 7.9358 5.4505 0.5914 12 6 6.5483 7.0937 0.6110 13 6 7.5786 7.9666 1.1941 14 6 8.5637 8.4425 0.0981 15 7 9.3934 7.3354 -0.3216 16 6 10.5680 7.1063 0.3439 17 1 10.8698 6.0953 0.5745 18 6 11.3711 8.1736 0.7220 19 7 12.2150 8.0399 1.7230 20 14 11.2539 9.7996 -0.1900 21 1 10.3324 10.7094 0.5368 22 1 12.6006 10.4201 -0.2706 23 1 10.7356 9.5619 -1.5612 24 6 9.0275 6.4423 -1.4380 25 6 7.5347 6.0664 -1.4144 26 6 5.4846 1.1053 0.0011 27 8 4.2630 0.5428 0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 5.1032 5.0509 0.0019 34 1 5.8317 6.8353 1.3907 35 1 6.0234 7.6493 -0.1662 36 1 8.1276 7.4161 1.9582 37 1 7.0986 8.8332 1.6488 38 1 8.0014 8.8191 -0.7565 39 1 9.1938 9.2376 0.4968 40 1 12.7759 8.7857 1.9876 41 1 9.6228 5.5316 -1.3724 42 1 9.2512 6.9441 -2.3794 43 1 7.3781 5.1704 -2.0150 44 1 6.9505 6.8872 -1.8305 45 1 6.4309 0.5847 0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052526289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:51 Heat of formation + Delta-G solvation = -46.488889 kcal Electronic energy + Delta-G solvation = -27568.905279 eV Core-core repulsion = 23588.661775 eV Total energy + Delta-G solvation = -3980.243503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.57437 -41.07626 -39.99293 -39.28692 -36.43284 -36.09787 -34.24824 -33.53147 -32.90996 -32.17161 -30.57735 -28.00187 -26.38364 -25.36826 -24.74855 -24.35698 -23.28983 -21.91571 -21.58068 -20.97326 -20.04104 -18.66676 -18.60172 -18.33898 -17.66814 -17.39740 -17.00837 -16.63470 -16.46034 -16.06826 -15.78177 -15.37453 -15.19933 -14.86228 -14.70126 -14.54798 -14.39293 -13.92675 -13.75623 -13.56909 -13.52202 -13.28949 -12.87686 -12.67327 -12.55492 -12.40455 -12.30186 -11.96285 -11.94186 -11.80652 -11.75936 -11.51594 -11.43876 -11.40200 -11.20836 -10.57111 -10.19145 -9.77391 -8.63781 -8.17587 -5.56658 -0.00323 0.81240 0.88953 1.33381 1.43803 1.56417 1.62080 2.07492 2.17812 2.45230 3.07732 3.30269 3.42213 3.70294 3.75700 3.92895 3.95628 4.01098 4.05642 4.26638 4.31023 4.33775 4.36387 4.38611 4.57292 4.61655 4.72814 4.81084 4.83775 4.87442 4.90708 5.02329 5.12107 5.14848 5.19071 5.22342 5.31727 5.36392 5.52707 5.59989 5.62616 6.01112 6.22122 6.28805 6.58373 7.09794 7.12400 7.71456 8.07396 9.02700 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.031948 B = 0.002480 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.224786 B =11286.744823 C =11654.021957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.041 3.959 3 O -0.255 6.255 4 C 0.385 3.615 5 N -0.479 5.479 6 C -0.071 4.071 7 C 0.597 3.403 8 O -0.566 6.566 9 N -0.696 5.696 10 C 0.158 3.842 11 H 0.056 0.944 12 C -0.104 4.104 13 C -0.132 4.132 14 C 0.137 3.863 15 N -0.611 5.611 16 C -0.261 4.261 17 H 0.025 0.975 18 C -0.019 4.019 19 N -0.949 5.949 20 Si 0.948 3.052 21 H -0.268 1.268 22 H -0.309 1.309 23 H -0.260 1.260 24 C 0.150 3.850 25 C -0.126 4.126 26 C 0.026 3.974 27 O -0.215 6.215 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.416 0.584 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.032 0.968 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.031 0.969 40 H 0.263 0.737 41 H 0.032 0.968 42 H 0.031 0.969 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.128 -14.863 -5.626 31.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 O -0.163 6.163 4 C 0.139 3.861 5 N -0.225 5.225 6 C -0.189 4.189 7 C 0.383 3.617 8 O -0.445 6.445 9 N -0.346 5.346 10 C 0.054 3.946 11 H 0.074 0.926 12 C -0.142 4.142 13 C -0.172 4.172 14 C 0.011 3.989 15 N -0.335 5.335 16 C -0.391 4.391 17 H 0.043 0.957 18 C -0.215 4.215 19 N -0.592 5.592 20 Si 0.776 3.224 21 H -0.195 1.195 22 H -0.237 1.237 23 H -0.184 1.184 24 C 0.025 3.975 25 C -0.166 4.166 26 C -0.046 4.046 27 O -0.105 6.105 28 H 0.129 0.871 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.253 0.747 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.051 0.949 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -26.788 -14.369 -5.564 30.904 hybrid contribution 0.779 -0.076 0.079 0.787 sum -26.009 -14.445 -5.485 30.252 Atomic orbital electron populations 1.21863 0.89715 1.05083 1.03904 1.23451 0.97986 0.77755 1.04143 1.86419 1.07714 1.33295 1.88899 1.23344 0.84210 0.81420 0.97158 1.70995 1.03911 1.22755 1.24867 1.21473 0.89909 0.94486 1.13065 1.16954 0.86126 0.82483 0.76137 1.90883 1.19568 1.81902 1.52180 1.45936 1.11203 1.04596 1.72862 1.20312 0.89322 0.87901 0.97059 0.92604 1.20524 0.98260 0.94069 1.01335 1.21207 0.97283 0.99671 0.99072 1.21271 0.92162 0.89390 0.96056 1.43950 1.20170 1.33785 1.35609 1.18597 0.98053 0.92297 1.30163 0.95719 1.26167 0.95860 1.02068 0.97437 1.70036 1.28368 1.33658 1.27174 0.85773 0.75598 0.80212 0.80802 1.19492 1.23733 1.18401 1.21230 0.93998 0.92894 0.89372 1.22109 0.96513 1.01814 0.96134 1.25521 0.86608 0.92244 1.00275 1.84427 1.15932 1.38599 1.71592 0.87082 0.91307 0.91223 0.89666 0.89793 0.74724 0.90914 0.89429 0.94907 0.89885 0.91359 0.95115 0.92835 0.94899 0.95076 0.91500 0.89605 0.72149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 10.28 71.98 0.74 0.09 16 2 C 0.04 0.33 6.38 71.98 0.46 0.79 16 3 O -0.25 -4.29 10.19 -64.18 -0.65 -4.94 16 4 C 0.39 8.00 8.98 130.43 1.17 9.17 16 5 N -0.48 -12.06 11.10 -419.39 -4.65 -16.72 16 6 C -0.07 -1.86 6.99 40.31 0.28 -1.57 16 7 C 0.60 19.15 7.63 86.64 0.66 19.81 16 8 O -0.57 -22.52 16.55 -4.09 -0.07 -22.59 16 9 N -0.70 -20.37 4.93 -449.83 -2.22 -22.59 16 10 C 0.16 5.36 2.06 44.16 0.09 5.45 16 11 H 0.06 2.51 6.92 -2.39 -0.02 2.49 16 12 C -0.10 -3.04 4.69 28.62 0.13 -2.90 16 13 C -0.13 -4.75 5.74 29.39 0.17 -4.58 16 14 C 0.14 5.67 4.52 87.37 0.39 6.06 16 15 N -0.61 -29.42 1.79 -698.43 -1.25 -30.67 16 16 C -0.26 -15.46 9.65 84.03 0.81 -14.65 16 17 H 0.03 1.69 8.06 -2.91 -0.02 1.66 16 18 C -0.02 -1.13 5.22 84.86 0.44 -0.69 16 19 N -0.95 -61.01 13.97 21.65 0.30 -60.70 16 20 Si 0.95 46.95 25.28 68.60 1.73 48.69 16 21 H -0.27 -12.41 6.70 99.48 0.67 -11.75 16 22 H -0.31 -15.50 7.11 99.48 0.71 -14.79 16 23 H -0.26 -12.31 7.11 99.48 0.71 -11.61 16 24 C 0.15 6.26 6.24 86.49 0.54 6.80 16 25 C -0.13 -4.14 5.39 30.22 0.16 -3.98 16 26 C 0.03 0.52 11.93 67.28 0.80 1.32 16 27 O -0.21 -3.84 10.20 18.94 0.19 -3.65 16 28 H 0.11 -0.02 8.14 -2.39 -0.02 -0.03 16 29 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.42 10.16 8.33 -92.71 -0.77 9.38 16 34 H 0.07 1.87 8.04 -2.38 -0.02 1.86 16 35 H 0.09 2.06 7.36 -2.39 -0.02 2.05 16 36 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.07 2.39 8.07 -2.38 -0.02 2.37 16 39 H 0.03 1.42 3.60 -2.39 -0.01 1.41 16 40 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 41 H 0.03 1.52 7.89 -2.39 -0.02 1.50 16 42 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 43 H 0.07 2.15 7.85 -2.39 -0.02 2.13 16 44 H 0.09 2.35 7.32 -2.38 -0.02 2.33 16 45 H 0.26 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -78.02 365.54 0.45 -77.57 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.20 Total: 14.49 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: 6.86 Total: 21.11 kcal Atomic # 7 Polarization: -122.86 SS G_CDS: -7.82 Total: -130.68 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.53 Total: -31.18 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.73 Total: 48.69 kcal Total: -78.02 0.45 -77.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052526289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.078 kcal (2) G-P(sol) polarization free energy of solvation -78.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds