Wall clock time and date at job start Tue Mar 31 2020 14:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47438 * 2 1 4 4 C 1.35352 * 117.00289 * 180.02562 * 3 2 1 5 5 N 1.30546 * 125.45039 * 179.97438 * 4 3 2 6 6 C 1.36333 * 108.38760 * 180.02562 * 5 4 3 7 7 C 1.47364 * 126.41729 * 179.97438 * 6 5 4 8 8 O 1.21623 * 120.00299 * 180.02562 * 7 6 5 9 9 N 1.34776 * 119.99634 * 0.02891 * 7 6 5 10 10 C 1.46506 * 119.99805 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.20406 * 35.63264 * 10 9 7 12 12 C 1.50120 * 109.20972 * 154.99506 * 10 9 7 13 13 C 1.52519 * 105.41545 * 218.02698 * 12 10 9 14 14 C 1.46242 * 114.27692 * 270.59397 * 13 12 10 15 15 N 1.50170 * 107.53356 * 58.40698 * 14 13 12 16 16 C 1.36933 * 120.53573 * 109.56692 * 15 14 13 17 17 H 1.07999 * 120.00387 * 157.04766 * 16 15 14 18 18 C 1.38817 * 120.00031 * 336.76561 * 16 15 14 19 19 N 1.31621 * 120.00092 * 340.41436 * 18 16 15 20 20 Si 1.86802 * 120.00130 * 160.40862 * 18 16 15 21 21 H 1.48496 * 109.46904 * 90.00114 * 20 18 16 22 22 H 1.48494 * 109.47399 * 210.00397 * 20 18 16 23 23 H 1.48507 * 109.46979 * 330.00617 * 20 18 16 24 24 C 1.43426 * 118.92602 * 289.84106 * 15 14 13 25 25 C 1.54414 * 116.38993 * 91.45436 * 24 15 14 26 26 C 1.35921 * 107.16773 * 0.22767 * 6 5 4 27 27 O 1.34210 * 125.44531 * 0.03837 * 4 3 2 28 28 H 1.08999 * 109.47097 * 300.00593 * 1 2 3 29 29 H 1.09001 * 109.46526 * 60.00331 * 1 2 3 30 30 H 1.08991 * 109.47403 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47097 * 239.99407 * 2 1 3 32 32 H 1.09001 * 109.47057 * 120.00222 * 2 1 3 33 33 H 0.96996 * 120.00286 * 359.97438 * 9 7 6 34 34 H 1.09004 * 110.24987 * 99.05525 * 12 10 9 35 35 H 1.08997 * 110.37081 * 337.06258 * 12 10 9 36 36 H 1.08997 * 108.52679 * 149.35621 * 13 12 10 37 37 H 1.08999 * 108.40012 * 31.74375 * 13 12 10 38 38 H 1.09005 * 109.84617 * 298.90047 * 14 13 12 39 39 H 1.09000 * 109.84559 * 177.91470 * 14 13 12 40 40 H 0.96994 * 119.99966 * 180.02562 * 19 18 16 41 41 H 1.09002 * 108.16374 * 213.02778 * 24 15 14 42 42 H 1.08998 * 108.16060 * 329.60039 * 24 15 14 43 43 H 1.08999 * 109.44461 * 198.43730 * 25 24 15 44 44 H 1.08993 * 109.34575 * 78.80529 * 25 24 15 45 45 H 1.08005 * 126.45003 * 179.74679 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3483 1.5245 -0.0005 5 7 3.9596 2.6780 -0.0011 6 6 5.3041 2.4522 -0.0021 7 6 6.3632 3.4768 -0.0035 8 8 7.5326 3.1426 -0.0048 9 7 6.0360 4.7842 -0.0033 10 6 7.0890 5.8028 -0.0053 11 1 7.9274 5.4507 -0.6062 12 6 6.5497 7.0695 -0.6040 13 6 7.6955 7.6484 -1.4277 14 6 8.5759 8.5485 -0.6837 15 7 9.1368 7.7765 0.4758 16 6 10.4581 7.4176 0.4987 17 1 10.9445 7.2081 1.4399 18 6 11.1708 7.3176 -0.6883 19 7 10.5312 7.1825 -1.8306 20 14 13.0378 7.3746 -0.6644 21 1 13.5733 5.9975 -0.5162 22 1 13.5314 7.9636 -1.9350 23 1 13.4930 8.2082 0.4773 24 6 8.2649 7.4160 1.5560 25 6 7.5694 6.0416 1.4472 26 6 5.4846 1.1050 -0.0073 27 8 4.2631 0.5426 -0.0018 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 5.1034 5.0507 -0.0027 34 1 6.2615 7.7661 0.1833 35 1 5.6959 6.8523 -1.2458 36 1 7.2739 8.1954 -2.2710 37 1 8.2921 6.8227 -1.8153 38 1 8.0075 9.4039 -0.3184 39 1 9.3863 8.8895 -1.3279 40 1 11.0292 7.1122 -2.6600 41 1 8.8452 7.4253 2.4787 42 1 7.4927 8.1807 1.6390 43 1 6.7125 6.0143 2.1203 44 1 8.2725 5.2578 1.7287 45 1 6.4309 0.5845 -0.0132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052526290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:55 Heat of formation + Delta-G solvation = -14.574516 kcal Electronic energy + Delta-G solvation = -27740.478214 eV Core-core repulsion = 23761.618622 eV Total energy + Delta-G solvation = -3978.859592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.59907 -39.56709 -39.16628 -37.58391 -35.07547 -34.55360 -32.41531 -32.11882 -31.51516 -30.03977 -29.44051 -26.20402 -24.75803 -24.04710 -23.71625 -22.85094 -22.14496 -20.55049 -20.02614 -19.11318 -18.82043 -17.80540 -17.22357 -16.62458 -16.48456 -15.94455 -15.52362 -15.21211 -15.00219 -14.49110 -14.10187 -13.81654 -13.68583 -13.54164 -13.36711 -13.24084 -13.12099 -12.38292 -12.25551 -12.16092 -11.78496 -11.76854 -11.41523 -11.19692 -11.09192 -10.93862 -10.71651 -10.56169 -10.34803 -10.19961 -10.01151 -9.74570 -9.59185 -9.42331 -9.27622 -8.87567 -8.50369 -8.28687 -6.63313 -5.70637 -3.08939 1.03122 1.65110 1.96297 2.49535 3.43916 3.45429 3.51276 3.52256 3.54583 4.30020 4.30631 4.41163 4.59577 4.62866 4.76324 4.94881 5.19581 5.19873 5.34623 5.41289 5.47083 5.49111 5.64094 5.66199 5.82319 5.97480 6.09702 6.34773 6.38639 6.41267 6.50277 6.55520 6.77821 6.93033 6.96165 7.01383 7.08960 7.17032 7.29229 7.36044 7.66175 7.82949 7.94709 8.04595 8.51401 8.53738 9.27790 9.95333 10.47885 11.37104 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.002642 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.610346 B =10594.629508 C =11113.579978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.246 6.246 4 C 0.378 3.622 5 N -0.455 5.455 6 C -0.039 4.039 7 C 0.593 3.407 8 O -0.525 6.525 9 N -0.706 5.706 10 C 0.154 3.846 11 H 0.104 0.896 12 C -0.122 4.122 13 C -0.129 4.129 14 C 0.165 3.835 15 N -0.588 5.588 16 C -0.247 4.247 17 H 0.067 0.933 18 C 0.002 3.998 19 N -0.900 5.900 20 Si 0.899 3.101 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.162 3.838 25 C -0.151 4.151 26 C -0.004 4.004 27 O -0.228 6.228 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.401 0.599 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.030 0.970 37 H 0.103 0.897 38 H 0.006 0.994 39 H 0.091 0.909 40 H 0.252 0.748 41 H 0.033 0.967 42 H 0.029 0.971 43 H 0.046 0.954 44 H 0.057 0.943 45 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.439 -12.844 2.561 23.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.155 6.155 4 C 0.132 3.868 5 N -0.201 5.201 6 C -0.158 4.158 7 C 0.377 3.623 8 O -0.402 6.402 9 N -0.356 5.356 10 C 0.052 3.948 11 H 0.122 0.878 12 C -0.160 4.160 13 C -0.168 4.168 14 C 0.042 3.958 15 N -0.309 5.309 16 C -0.376 4.376 17 H 0.085 0.915 18 C -0.196 4.196 19 N -0.545 5.545 20 Si 0.730 3.270 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.032 3.968 25 C -0.194 4.194 26 C -0.076 4.076 27 O -0.119 6.119 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.235 0.765 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.121 0.879 38 H 0.025 0.975 39 H 0.109 0.891 40 H 0.062 0.938 41 H 0.051 0.949 42 H 0.047 0.953 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -19.032 -12.387 2.392 22.834 hybrid contribution 0.677 -1.055 -0.092 1.257 sum -18.355 -13.442 2.300 22.867 Atomic orbital electron populations 1.21809 0.91258 1.03616 1.04221 1.23043 0.96813 0.79473 1.03044 1.86372 1.09055 1.30709 1.89321 1.23294 0.83410 0.81707 0.98396 1.71113 1.04099 1.21478 1.23371 1.21967 0.90140 0.94324 1.09403 1.16697 0.86022 0.82136 0.77480 1.90895 1.17676 1.81238 1.50365 1.46372 1.11168 1.05274 1.72765 1.21375 0.89360 0.86000 0.98066 0.87776 1.21365 0.98546 0.96482 0.99587 1.20934 0.95569 1.03084 0.97253 1.20174 0.95835 0.90681 0.89157 1.44297 1.05703 1.60349 1.20576 1.19188 0.85067 1.41110 0.92268 0.91523 1.24890 0.97921 1.00834 0.95969 1.69959 1.33778 1.53243 0.97542 0.86338 0.86241 0.77678 0.76773 1.21597 1.21732 1.20710 1.20254 0.92565 0.91872 0.92123 1.23239 0.99237 1.02103 0.94775 1.25000 0.85680 0.93034 1.03869 1.84372 1.16311 1.39157 1.72060 0.90960 0.90946 0.89476 0.90818 0.90831 0.76457 0.91783 0.92654 0.95116 0.87926 0.97542 0.89118 0.93809 0.94858 0.95297 0.93537 0.92436 0.74729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 10.28 37.16 0.38 -0.22 16 2 C 0.05 0.31 6.38 37.16 0.24 0.54 16 3 O -0.25 -2.52 10.19 -40.98 -0.42 -2.93 16 4 C 0.38 4.67 8.98 52.22 0.47 5.14 16 5 N -0.45 -6.64 11.10 -11.71 -0.13 -6.77 16 6 C -0.04 -0.59 6.99 -82.98 -0.58 -1.17 16 7 C 0.59 10.76 7.76 -12.55 -0.10 10.67 16 8 O -0.53 -11.36 16.55 5.26 0.09 -11.27 16 9 N -0.71 -12.28 4.97 -55.35 -0.28 -12.55 16 10 C 0.15 3.08 2.22 -68.39 -0.15 2.92 16 11 H 0.10 2.60 6.26 -51.93 -0.33 2.27 16 12 C -0.12 -2.24 5.33 -28.41 -0.15 -2.39 16 13 C -0.13 -2.78 5.02 -30.19 -0.15 -2.93 16 14 C 0.16 3.84 5.25 -5.20 -0.03 3.81 16 15 N -0.59 -14.55 2.61 -175.40 -0.46 -15.00 16 16 C -0.25 -6.78 9.62 -15.06 -0.14 -6.92 16 17 H 0.07 1.83 7.89 -52.49 -0.41 1.42 16 18 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 19 N -0.90 -25.32 9.43 55.49 0.52 -24.79 16 20 Si 0.90 22.03 29.60 -169.99 -5.03 16.99 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.16 3.45 5.13 -4.93 -0.03 3.43 16 25 C -0.15 -3.05 5.97 -25.02 -0.15 -3.20 16 26 C 0.00 -0.05 11.93 29.90 0.36 0.31 16 27 O -0.23 -2.54 10.20 -17.75 -0.18 -2.72 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.40 6.13 8.20 -40.82 -0.33 5.79 16 34 H 0.06 1.12 6.28 -51.93 -0.33 0.80 16 35 H 0.05 0.91 7.86 -51.93 -0.41 0.50 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.10 2.60 5.29 -51.93 -0.27 2.33 16 38 H 0.01 0.14 8.13 -51.93 -0.42 -0.28 16 39 H 0.09 2.36 6.05 -51.93 -0.31 2.04 16 40 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.03 0.71 7.99 -51.93 -0.41 0.30 16 42 H 0.03 0.56 6.89 -51.93 -0.36 0.20 16 43 H 0.05 0.83 8.12 -51.93 -0.42 0.40 16 44 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.24 2.16 8.06 -52.48 -0.42 1.73 16 LS Contribution 364.07 15.07 5.49 5.49 Total: -1.00 -31.90 364.07 -7.05 -38.95 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.53 Total: 4.65 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: -0.12 Total: 9.96 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: -0.34 Total: -59.12 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.51 Total: -16.93 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.90 -7.05 -38.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052526290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.377 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds