Wall clock time and date at job start Tue Mar 31 2020 14:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47438 * 2 1 4 4 C 1.35352 * 117.00289 * 180.02562 * 3 2 1 5 5 N 1.30546 * 125.45039 * 179.97438 * 4 3 2 6 6 C 1.36333 * 108.38760 * 180.02562 * 5 4 3 7 7 C 1.47364 * 126.41729 * 179.97438 * 6 5 4 8 8 O 1.21623 * 120.00299 * 180.02562 * 7 6 5 9 9 N 1.34776 * 119.99634 * 0.02891 * 7 6 5 10 10 C 1.46506 * 119.99805 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.20406 * 35.63264 * 10 9 7 12 12 C 1.50120 * 109.20972 * 154.99506 * 10 9 7 13 13 C 1.52519 * 105.41545 * 218.02698 * 12 10 9 14 14 C 1.46242 * 114.27692 * 270.59397 * 13 12 10 15 15 N 1.50170 * 107.53356 * 58.40698 * 14 13 12 16 16 C 1.36933 * 120.53573 * 109.56692 * 15 14 13 17 17 H 1.07999 * 120.00387 * 157.04766 * 16 15 14 18 18 C 1.38817 * 120.00031 * 336.76561 * 16 15 14 19 19 N 1.31621 * 120.00092 * 340.41436 * 18 16 15 20 20 Si 1.86802 * 120.00130 * 160.40862 * 18 16 15 21 21 H 1.48496 * 109.46904 * 90.00114 * 20 18 16 22 22 H 1.48494 * 109.47399 * 210.00397 * 20 18 16 23 23 H 1.48507 * 109.46979 * 330.00617 * 20 18 16 24 24 C 1.43426 * 118.92602 * 289.84106 * 15 14 13 25 25 C 1.54414 * 116.38993 * 91.45436 * 24 15 14 26 26 C 1.35921 * 107.16773 * 0.22767 * 6 5 4 27 27 O 1.34210 * 125.44531 * 0.03837 * 4 3 2 28 28 H 1.08999 * 109.47097 * 300.00593 * 1 2 3 29 29 H 1.09001 * 109.46526 * 60.00331 * 1 2 3 30 30 H 1.08991 * 109.47403 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47097 * 239.99407 * 2 1 3 32 32 H 1.09001 * 109.47057 * 120.00222 * 2 1 3 33 33 H 0.96996 * 120.00286 * 359.97438 * 9 7 6 34 34 H 1.09004 * 110.24987 * 99.05525 * 12 10 9 35 35 H 1.08997 * 110.37081 * 337.06258 * 12 10 9 36 36 H 1.08997 * 108.52679 * 149.35621 * 13 12 10 37 37 H 1.08999 * 108.40012 * 31.74375 * 13 12 10 38 38 H 1.09005 * 109.84617 * 298.90047 * 14 13 12 39 39 H 1.09000 * 109.84559 * 177.91470 * 14 13 12 40 40 H 0.96994 * 119.99966 * 180.02562 * 19 18 16 41 41 H 1.09002 * 108.16374 * 213.02778 * 24 15 14 42 42 H 1.08998 * 108.16060 * 329.60039 * 24 15 14 43 43 H 1.08999 * 109.44461 * 198.43730 * 25 24 15 44 44 H 1.08993 * 109.34575 * 78.80529 * 25 24 15 45 45 H 1.08005 * 126.45003 * 179.74679 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3483 1.5245 -0.0005 5 7 3.9596 2.6780 -0.0011 6 6 5.3041 2.4522 -0.0021 7 6 6.3632 3.4768 -0.0035 8 8 7.5326 3.1426 -0.0048 9 7 6.0360 4.7842 -0.0033 10 6 7.0890 5.8028 -0.0053 11 1 7.9274 5.4507 -0.6062 12 6 6.5497 7.0695 -0.6040 13 6 7.6955 7.6484 -1.4277 14 6 8.5759 8.5485 -0.6837 15 7 9.1368 7.7765 0.4758 16 6 10.4581 7.4176 0.4987 17 1 10.9445 7.2081 1.4399 18 6 11.1708 7.3176 -0.6883 19 7 10.5312 7.1825 -1.8306 20 14 13.0378 7.3746 -0.6644 21 1 13.5733 5.9975 -0.5162 22 1 13.5314 7.9636 -1.9350 23 1 13.4930 8.2082 0.4773 24 6 8.2649 7.4160 1.5560 25 6 7.5694 6.0416 1.4472 26 6 5.4846 1.1050 -0.0073 27 8 4.2631 0.5426 -0.0018 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 5.1034 5.0507 -0.0027 34 1 6.2615 7.7661 0.1833 35 1 5.6959 6.8523 -1.2458 36 1 7.2739 8.1954 -2.2710 37 1 8.2921 6.8227 -1.8153 38 1 8.0075 9.4039 -0.3184 39 1 9.3863 8.8895 -1.3279 40 1 11.0292 7.1122 -2.6600 41 1 8.8452 7.4253 2.4787 42 1 7.4927 8.1807 1.6390 43 1 6.7125 6.0143 2.1203 44 1 8.2725 5.2578 1.7287 45 1 6.4309 0.5845 -0.0132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052526290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:54 Heat of formation + Delta-G solvation = -39.112861 kcal Electronic energy + Delta-G solvation = -27741.542277 eV Core-core repulsion = 23761.618622 eV Total energy + Delta-G solvation = -3979.923655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.57853 -40.99327 -39.98997 -39.24689 -36.29813 -36.08288 -33.96365 -33.31809 -32.88642 -31.67137 -30.53800 -28.02683 -26.08084 -25.56252 -24.65292 -24.18862 -23.21528 -22.00321 -21.44219 -20.76419 -19.99691 -18.67304 -18.59404 -18.34431 -17.42841 -17.08446 -16.91051 -16.59899 -16.16236 -16.05499 -15.69002 -15.52948 -15.17426 -14.98438 -14.59125 -14.04669 -13.92901 -13.90507 -13.57026 -13.48578 -13.20437 -13.13639 -12.67368 -12.66169 -12.57071 -12.35915 -12.16244 -11.95011 -11.94768 -11.80003 -11.76076 -11.58759 -11.18912 -11.16779 -11.10057 -10.42152 -10.05841 -9.75922 -8.61498 -7.79506 -5.19398 -0.00694 0.80187 0.89311 1.47579 1.49411 1.58252 1.62290 2.14170 2.19031 2.57003 3.32111 3.34565 3.64619 3.69907 3.92796 3.95653 4.02622 4.03566 4.14101 4.26452 4.33935 4.37496 4.50302 4.61714 4.66256 4.76095 4.83815 4.87481 4.89331 4.91474 5.07440 5.19048 5.20423 5.29490 5.31222 5.41448 5.52029 5.61022 5.65279 5.70542 5.79880 6.21288 6.30443 6.46144 6.60885 7.15800 7.22438 7.95872 8.44310 9.24767 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.002642 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.610346 B =10594.629508 C =11113.579978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.040 3.960 3 O -0.254 6.254 4 C 0.386 3.614 5 N -0.479 5.479 6 C -0.071 4.071 7 C 0.593 3.407 8 O -0.570 6.570 9 N -0.698 5.698 10 C 0.167 3.833 11 H 0.049 0.951 12 C -0.108 4.108 13 C -0.122 4.122 14 C 0.167 3.833 15 N -0.602 5.602 16 C -0.259 4.259 17 H 0.059 0.941 18 C -0.046 4.046 19 N -0.916 5.916 20 Si 0.956 3.044 21 H -0.294 1.294 22 H -0.291 1.291 23 H -0.274 1.274 24 C 0.156 3.844 25 C -0.141 4.141 26 C 0.026 3.974 27 O -0.214 6.214 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.414 0.586 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.060 0.940 38 H 0.033 0.967 39 H 0.058 0.942 40 H 0.246 0.754 41 H 0.029 0.971 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.024 0.976 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.841 -13.583 3.231 25.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 O -0.163 6.163 4 C 0.139 3.861 5 N -0.226 5.226 6 C -0.188 4.188 7 C 0.379 3.621 8 O -0.450 6.450 9 N -0.348 5.348 10 C 0.064 3.936 11 H 0.067 0.933 12 C -0.146 4.146 13 C -0.161 4.161 14 C 0.044 3.956 15 N -0.324 5.324 16 C -0.389 4.389 17 H 0.077 0.923 18 C -0.242 4.242 19 N -0.562 5.562 20 Si 0.786 3.214 21 H -0.222 1.222 22 H -0.217 1.217 23 H -0.199 1.199 24 C 0.028 3.972 25 C -0.183 4.183 26 C -0.047 4.047 27 O -0.105 6.105 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.130 0.870 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.251 0.749 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.047 0.953 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.043 0.957 45 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -21.499 -13.117 3.079 25.372 hybrid contribution 1.315 -0.926 -0.278 1.632 sum -20.184 -14.043 2.801 24.748 Atomic orbital electron populations 1.21861 0.89642 1.05104 1.03914 1.23461 0.98032 0.77748 1.04150 1.86421 1.07595 1.33333 1.88914 1.23337 0.84236 0.81390 0.97109 1.70990 1.03882 1.22841 1.24859 1.21485 0.89899 0.94510 1.12953 1.17052 0.86164 0.82698 0.76217 1.90869 1.19766 1.81945 1.52438 1.46180 1.11212 1.04861 1.72503 1.20950 0.88563 0.87142 0.96989 0.93318 1.21272 0.97897 0.95469 0.99942 1.20740 0.95916 1.01433 0.98035 1.20130 0.95242 0.91652 0.88594 1.44463 1.05505 1.60782 1.21616 1.19372 0.86779 1.40821 0.91972 0.92321 1.25541 1.01365 1.01336 0.95926 1.70137 1.34516 1.53987 0.97553 0.85449 0.82088 0.77144 0.76742 1.22199 1.21731 1.19903 1.20385 0.92912 0.93151 0.90781 1.23106 0.99400 1.00200 0.95557 1.25492 0.86622 0.92180 1.00423 1.84421 1.15859 1.38533 1.71644 0.91230 0.91286 0.87025 0.89767 0.89685 0.74886 0.89746 0.90123 0.93546 0.92145 0.94883 0.92399 0.94495 0.95263 0.92372 0.90453 0.95741 0.72183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.28 71.98 0.74 -0.07 16 2 C 0.04 0.38 6.38 71.98 0.46 0.84 16 3 O -0.25 -4.70 10.19 -64.21 -0.65 -5.35 16 4 C 0.39 8.82 8.98 130.43 1.17 9.99 16 5 N -0.48 -13.39 11.10 -419.39 -4.65 -18.04 16 6 C -0.07 -2.07 6.99 40.31 0.28 -1.79 16 7 C 0.59 21.72 7.76 86.65 0.67 22.40 16 8 O -0.57 -25.57 16.55 -4.10 -0.07 -25.64 16 9 N -0.70 -23.98 4.97 -447.26 -2.22 -26.20 16 10 C 0.17 6.68 2.22 44.69 0.10 6.78 16 11 H 0.05 2.55 6.26 -2.39 -0.01 2.53 16 12 C -0.11 -3.78 5.33 29.51 0.16 -3.62 16 13 C -0.12 -5.23 5.02 28.35 0.14 -5.09 16 14 C 0.17 7.76 5.25 83.58 0.44 8.20 16 15 N -0.60 -30.00 2.61 -708.83 -1.85 -31.85 16 16 C -0.26 -14.57 9.62 84.04 0.81 -13.76 16 17 H 0.06 3.32 7.89 -2.91 -0.02 3.29 16 18 C -0.05 -2.60 4.91 84.86 0.42 -2.18 16 19 N -0.92 -53.42 9.43 21.65 0.20 -53.21 16 20 Si 0.96 46.46 29.60 68.60 2.03 48.49 16 21 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 22 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 23 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 24 C 0.16 6.55 5.13 87.43 0.45 7.00 16 25 C -0.14 -5.62 5.97 31.70 0.19 -5.43 16 26 C 0.03 0.57 11.93 67.28 0.80 1.37 16 27 O -0.21 -4.26 10.20 18.91 0.19 -4.07 16 28 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.41 12.05 8.20 -92.71 -0.76 11.29 16 34 H 0.08 2.65 6.28 -2.39 -0.01 2.64 16 35 H 0.08 2.43 7.86 -2.39 -0.02 2.41 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.06 3.17 5.29 -2.39 -0.01 3.16 16 38 H 0.03 1.35 8.13 -2.38 -0.02 1.33 16 39 H 0.06 3.07 6.05 -2.39 -0.01 3.06 16 40 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 41 H 0.03 1.24 7.99 -2.39 -0.02 1.22 16 42 H 0.06 2.10 6.89 -2.39 -0.02 2.08 16 43 H 0.08 2.59 8.12 -2.39 -0.02 2.58 16 44 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.26 4.25 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -72.38 364.07 0.06 -72.31 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.26 Total: 18.92 kcal Atomic # 6 Polarization: 17.82 SS G_CDS: 6.83 Total: 24.65 kcal Atomic # 7 Polarization: -120.79 SS G_CDS: -8.53 Total: -129.31 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -0.53 Total: -35.06 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -72.38 0.06 -72.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052526290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.201 kcal (2) G-P(sol) polarization free energy of solvation -72.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds