Wall clock time and date at job start Tue Mar 31 2020 14:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.46799 * 2 1 4 4 C 1.35736 * 116.99871 * 179.97438 * 3 2 1 5 5 C 1.41850 * 126.78601 * 180.29671 * 4 3 2 6 6 C 1.36659 * 103.81277 * 180.11799 * 5 4 3 7 7 C 1.47549 * 126.88239 * 179.87753 * 6 5 4 8 8 O 1.21577 * 119.99429 * 359.71177 * 7 6 5 9 9 N 1.34769 * 119.99848 * 179.71777 * 7 6 5 10 10 C 1.46508 * 119.99802 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.48945 * 325.04185 * 10 9 7 12 12 C 1.52568 * 109.49015 * 204.99578 * 10 9 7 13 13 C 1.47093 * 114.32330 * 155.00386 * 12 10 9 14 14 C 1.54863 * 110.32676 * 62.79899 * 13 12 10 15 15 N 1.44580 * 109.57847 * 288.74806 * 14 13 12 16 16 C 1.36936 * 118.64184 * 270.71385 * 15 14 13 17 17 H 1.07998 * 120.00338 * 26.53481 * 16 15 14 18 18 C 1.38816 * 119.99915 * 206.54048 * 16 15 14 19 19 N 1.31620 * 120.00010 * 15.72318 * 18 16 15 20 20 Si 1.86801 * 120.00173 * 195.71616 * 18 16 15 21 21 H 1.48497 * 109.46938 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46817 * 120.00238 * 20 18 16 23 23 H 1.48492 * 109.47445 * 240.00341 * 20 18 16 24 24 C 1.47575 * 122.73435 * 90.75972 * 15 14 13 25 25 C 1.50887 * 109.50694 * 85.09764 * 10 9 7 26 26 O 1.34657 * 106.24199 * 359.61940 * 6 5 4 27 27 N 1.20878 * 111.63127 * 0.25962 * 26 6 5 28 28 H 1.08996 * 109.47188 * 60.00615 * 1 2 3 29 29 H 1.08998 * 109.46848 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47306 * 300.00165 * 1 2 3 31 31 H 1.08995 * 109.47737 * 240.00083 * 2 1 3 32 32 H 1.09006 * 109.47243 * 119.99405 * 2 1 3 33 33 H 1.08000 * 128.09802 * 0.02562 * 5 4 3 34 34 H 0.96997 * 120.00703 * 359.97438 * 9 7 6 35 35 H 1.08991 * 108.51324 * 33.74613 * 12 10 9 36 36 H 1.09000 * 108.51233 * 276.25250 * 12 10 9 37 37 H 1.09003 * 109.32680 * 302.53667 * 13 12 10 38 38 H 1.09002 * 109.18784 * 182.97584 * 13 12 10 39 39 H 1.09001 * 109.44815 * 48.77106 * 14 13 12 40 40 H 1.08998 * 109.45162 * 168.72168 * 14 13 12 41 41 H 0.97000 * 120.00099 * 179.97438 * 19 18 16 42 42 H 1.08999 * 108.95234 * 197.15037 * 24 15 14 43 43 H 1.08999 * 108.89335 * 78.46045 * 24 15 14 44 44 H 1.08999 * 109.36765 * 332.05477 * 25 10 9 45 45 H 1.09004 * 109.36623 * 91.79653 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5252 0.0005 5 6 4.0451 2.7628 0.0065 6 6 5.3624 2.3989 0.0016 7 6 6.5302 3.3007 0.0021 8 8 6.3677 4.5056 0.0020 9 7 7.7769 2.7888 0.0026 10 6 8.9365 3.6842 0.0025 11 1 8.7097 4.5728 -0.5866 12 6 10.1362 2.9634 -0.6047 13 6 11.1483 3.8571 -1.1882 14 6 11.7605 4.7645 -0.0927 15 7 10.7839 5.7450 0.3258 16 6 10.7262 6.9398 -0.3406 17 1 11.0508 7.0009 -1.3688 18 6 10.2505 8.0727 0.3055 19 7 10.1478 8.0876 1.6176 20 14 9.7563 9.5759 -0.6872 21 1 9.9649 9.3052 -2.1323 22 1 8.3237 9.8813 -0.4430 23 1 10.5868 10.7360 -0.2756 24 6 9.8471 5.5121 1.4421 25 6 9.2606 4.0889 1.4195 26 8 5.3812 1.0525 0.0021 27 7 4.2639 0.5912 0.0015 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 3.6293 3.7595 0.0120 34 1 7.9065 1.8275 0.0030 35 1 9.7778 2.2908 -1.3839 36 1 10.6103 2.3648 0.1731 37 1 10.6827 4.4788 -1.9530 38 1 11.9371 3.2571 -1.6421 39 1 12.0520 4.1547 0.7625 40 1 12.6379 5.2735 -0.4915 41 1 9.8157 8.8793 2.0691 42 1 9.0314 6.2321 1.3757 43 1 10.3755 5.6622 2.3835 44 1 8.3512 4.0631 2.0198 45 1 9.9888 3.3932 1.8365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052566711.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:50 Heat of formation + Delta-G solvation = -5.588309 kcal Electronic energy + Delta-G solvation = -27695.610101 eV Core-core repulsion = 23717.140180 eV Total energy + Delta-G solvation = -3978.469921 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.15682 -41.16580 -40.12497 -39.23469 -36.43425 -34.70874 -34.51448 -33.34468 -32.62728 -32.21338 -31.84512 -27.92724 -26.31326 -25.23357 -24.94605 -24.55483 -23.75070 -21.88594 -21.61106 -20.98588 -19.99978 -19.14645 -18.52714 -18.07294 -17.55162 -17.08942 -17.02794 -16.82814 -16.19007 -15.94429 -15.69645 -15.52754 -15.26882 -14.87817 -14.69725 -14.36441 -14.10408 -13.98355 -13.59911 -13.55654 -13.27526 -13.01765 -12.97882 -12.76431 -12.51610 -12.39887 -12.15234 -12.11501 -11.98956 -11.71919 -11.51045 -11.45084 -11.31834 -11.29199 -11.07318 -10.48554 -10.41070 -10.19704 -8.60407 -7.82309 -5.27011 -0.43094 0.89792 1.35128 1.43706 1.47223 1.47954 1.55782 1.83381 2.23313 2.53629 2.91134 3.32510 3.55296 3.70623 3.76438 3.85242 3.89002 3.91694 4.06510 4.11711 4.25646 4.40724 4.48994 4.51811 4.52371 4.72984 4.77298 4.84452 4.85828 4.97802 5.02896 5.14472 5.16724 5.26640 5.28306 5.36696 5.52475 5.56773 5.65777 5.73919 5.83162 5.84069 6.28455 6.45580 6.84849 6.98191 7.23003 8.01313 8.38566 9.22741 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017978 B = 0.002843 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.096525 B = 9845.514823 C =10864.904799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 O -0.290 6.290 4 C 0.207 3.793 5 C -0.159 4.159 6 C -0.050 4.050 7 C 0.601 3.399 8 O -0.543 6.543 9 N -0.690 5.690 10 C 0.161 3.839 11 H 0.061 0.939 12 C -0.105 4.105 13 C -0.132 4.132 14 C 0.146 3.854 15 N -0.604 5.604 16 C -0.256 4.256 17 H 0.066 0.934 18 C -0.051 4.051 19 N -0.935 5.935 20 Si 0.955 3.045 21 H -0.266 1.266 22 H -0.298 1.298 23 H -0.290 1.290 24 C 0.194 3.806 25 C -0.134 4.134 26 O 0.125 5.875 27 N -0.395 5.395 28 H 0.068 0.932 29 H 0.105 0.895 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.196 0.804 34 H 0.421 0.579 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.039 0.961 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.037 0.963 41 H 0.246 0.754 42 H 0.031 0.969 43 H -0.003 1.003 44 H 0.053 0.947 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.396 -21.384 -3.811 25.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 O -0.197 6.197 4 C 0.010 3.990 5 C -0.182 4.182 6 C -0.116 4.116 7 C 0.384 3.616 8 O -0.420 6.420 9 N -0.341 5.341 10 C 0.058 3.942 11 H 0.079 0.921 12 C -0.143 4.143 13 C -0.172 4.172 14 C 0.020 3.980 15 N -0.327 5.327 16 C -0.386 4.386 17 H 0.084 0.916 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.784 3.216 21 H -0.190 1.190 22 H -0.226 1.226 23 H -0.217 1.217 24 C 0.068 3.932 25 C -0.174 4.174 26 O 0.058 5.942 27 N -0.120 5.120 28 H 0.087 0.913 29 H 0.124 0.876 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.213 0.787 34 H 0.259 0.741 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.058 0.942 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.015 0.985 44 H 0.072 0.928 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.824 -21.564 -3.709 25.362 hybrid contribution -0.532 1.672 -0.065 1.755 sum -13.356 -19.893 -3.773 24.256 Atomic orbital electron populations 1.21834 0.90128 1.04728 1.03718 1.23143 0.97526 0.79175 1.02710 1.86250 1.12200 1.32228 1.89022 1.21871 0.86399 0.90197 1.00520 1.22392 0.90242 0.99938 1.05642 1.23790 0.96071 0.84350 1.07392 1.16651 0.81908 0.85706 0.77358 1.90971 1.85260 1.14820 1.50953 1.45976 1.04157 1.11683 1.72290 1.20378 0.84672 0.92499 0.96691 0.92052 1.20540 0.94040 0.98263 1.01425 1.21287 0.98839 0.98223 0.98900 1.20971 0.90700 0.90624 0.95700 1.43865 1.37032 1.14279 1.37506 1.19503 1.38310 0.86753 0.94068 0.91639 1.25701 1.02865 1.00081 0.95978 1.70208 1.51232 1.29024 1.07717 0.85386 0.76977 0.80194 0.79054 1.19020 1.22567 1.21725 1.20613 0.91693 0.92380 0.88540 1.22273 1.00352 0.98364 0.96427 1.84929 1.22743 1.17980 1.68506 1.73948 0.90568 1.22098 1.25343 0.91307 0.87615 0.91358 0.91211 0.91277 0.78650 0.74131 0.89924 0.89856 0.94201 0.89171 0.93257 0.94417 0.94509 0.95037 0.98457 0.92847 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.28 71.98 0.74 -0.63 16 2 C 0.05 0.72 6.38 71.98 0.46 1.17 16 3 O -0.29 -6.16 10.21 -90.59 -0.92 -7.08 16 4 C 0.21 4.87 8.00 85.78 0.69 5.56 16 5 C -0.16 -3.91 10.97 22.79 0.25 -3.66 16 6 C -0.05 -1.25 7.29 24.36 0.18 -1.07 16 7 C 0.60 18.31 7.64 86.70 0.66 18.97 16 8 O -0.54 -22.17 16.57 -3.96 -0.07 -22.24 16 9 N -0.69 -17.78 4.93 -449.67 -2.22 -19.99 16 10 C 0.16 5.22 2.06 44.16 0.09 5.31 16 11 H 0.06 2.64 6.92 -2.39 -0.02 2.62 16 12 C -0.10 -2.64 4.69 28.61 0.13 -2.50 16 13 C -0.13 -3.93 5.74 29.39 0.17 -3.76 16 14 C 0.15 5.59 5.66 87.37 0.49 6.08 16 15 N -0.60 -29.60 2.27 -698.44 -1.58 -31.18 16 16 C -0.26 -14.16 9.44 84.03 0.79 -13.37 16 17 H 0.07 3.55 7.88 -2.91 -0.02 3.53 16 18 C -0.05 -2.96 4.87 84.86 0.41 -2.55 16 19 N -0.94 -57.26 11.01 21.65 0.24 -57.02 16 20 Si 0.95 47.15 29.58 68.60 2.03 49.18 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 22 H -0.30 -15.08 7.11 99.48 0.71 -14.38 16 23 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 24 C 0.19 9.52 4.67 86.49 0.40 9.92 16 25 C -0.13 -4.89 5.39 30.23 0.16 -4.73 16 26 O 0.12 2.79 11.03 65.69 0.72 3.51 16 27 N -0.40 -9.21 11.50 -172.01 -1.98 -11.19 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 32 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.20 4.47 8.06 -2.91 -0.02 4.44 16 34 H 0.42 7.43 8.43 -92.71 -0.78 6.65 16 35 H 0.08 1.63 8.04 -2.39 -0.02 1.61 16 36 H 0.08 1.74 7.36 -2.39 -0.02 1.73 16 37 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.05 1.72 8.07 -2.39 -0.02 1.70 16 40 H 0.04 1.49 7.99 -2.39 -0.02 1.47 16 41 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 42 H 0.03 1.83 6.33 -2.39 -0.02 1.81 16 43 H 0.00 -0.14 8.03 -2.39 -0.02 -0.16 16 44 H 0.05 1.98 7.85 -2.39 -0.02 1.96 16 45 H 0.08 2.42 7.32 -2.39 -0.02 2.40 16 Total: -1.00 -72.09 369.04 2.08 -70.01 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.22 Total: 11.25 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 5.64 Total: 14.75 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -5.54 Total: -119.38 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.27 Total: -25.81 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -72.09 2.08 -70.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052566711.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.423 kcal (2) G-P(sol) polarization free energy of solvation -72.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds