Wall clock time and date at job start Tue Mar 31 2020 14:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35704 * 117.00096 * 2 1 4 4 C 1.41934 * 126.88201 * 179.97438 * 3 2 1 5 5 C 1.35262 * 103.96237 * 179.97438 * 4 3 2 6 6 C 1.50700 * 126.70964 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47208 * 90.00140 * 6 5 4 8 8 C 1.50700 * 109.47208 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99803 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99675 * 180.27843 * 8 7 6 11 11 C 1.47426 * 125.64311 * 179.44245 * 10 8 7 12 12 C 1.55133 * 104.71908 * 155.81228 * 11 10 8 13 13 H 1.08998 * 111.19624 * 279.19041 * 12 11 10 14 14 C 1.52998 * 110.93643 * 155.28702 * 12 11 10 15 15 C 1.55156 * 101.48303 * 37.29714 * 12 11 10 16 16 H 1.09002 * 110.87050 * 205.89342 * 15 12 11 17 17 N 1.46503 * 110.72096 * 82.69529 * 15 12 11 18 18 C 1.36944 * 119.99652 * 160.02253 * 17 15 12 19 19 H 1.08002 * 120.00194 * 359.97438 * 18 17 15 20 20 C 1.38810 * 119.99389 * 179.97438 * 18 17 15 21 21 N 1.31611 * 120.00559 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99560 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47361 * 90.00189 * 22 20 18 24 24 H 1.48497 * 109.47117 * 209.99770 * 22 20 18 25 25 H 1.48500 * 109.47251 * 329.99871 * 22 20 18 26 26 C 1.47016 * 125.64953 * 359.74753 * 10 8 7 27 27 O 1.34086 * 106.58245 * 0.26217 * 5 4 3 28 28 N 1.20909 * 111.71640 * 359.52728 * 27 5 4 29 29 H 1.09000 * 109.47319 * 300.00004 * 1 2 3 30 30 H 1.08999 * 109.47121 * 60.00307 * 1 2 3 31 31 H 1.09000 * 109.46832 * 180.02562 * 1 2 3 32 32 H 1.08003 * 128.01371 * 0.02562 * 4 3 2 33 33 H 1.09000 * 109.47500 * 330.00144 * 6 5 4 34 34 H 1.08998 * 109.47585 * 210.00139 * 6 5 4 35 35 H 1.09009 * 109.46730 * 59.99906 * 7 6 5 36 36 H 1.08998 * 109.46846 * 300.00451 * 7 6 5 37 37 H 1.08999 * 110.36638 * 274.74255 * 11 10 8 38 38 H 1.09000 * 110.36899 * 37.07072 * 11 10 8 39 39 H 1.08999 * 109.47193 * 307.95665 * 14 12 11 40 40 H 1.09001 * 109.47513 * 67.95850 * 14 12 11 41 41 H 1.09004 * 109.47020 * 187.95779 * 14 12 11 42 42 H 0.96990 * 119.99796 * 340.01996 * 17 15 12 43 43 H 0.96994 * 120.00669 * 180.02562 * 21 20 18 44 44 H 1.09004 * 109.88101 * 300.43815 * 26 10 8 45 45 H 1.08997 * 109.88649 * 61.45491 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4434 1.4527 0.0005 5 6 3.5397 2.8019 -0.0003 6 6 4.8088 3.6144 0.0003 7 6 5.2397 3.8885 -1.4420 8 6 6.5092 4.7005 -1.4414 9 8 7.0189 5.0282 -0.3908 10 7 7.0748 5.0678 -2.6083 11 6 8.3041 5.8686 -2.7528 12 6 8.8567 5.4934 -4.1529 13 1 9.4054 4.5522 -4.1208 14 6 9.7316 6.6160 -4.7142 15 6 7.5475 5.3462 -4.9725 16 1 7.6908 4.6699 -5.8152 17 7 7.0753 6.6539 -5.4344 18 6 6.2021 6.7340 -6.4863 19 1 5.8619 5.8333 -6.9756 20 6 5.7543 7.9730 -6.9236 21 7 6.1685 9.0706 -6.3270 22 14 4.5627 8.0824 -8.3580 23 1 3.1687 8.0359 -7.8482 24 1 4.7809 9.3578 -9.0866 25 1 4.7912 6.9406 -9.2795 26 6 6.5645 4.7414 -3.9479 27 8 2.2851 3.2750 0.0047 28 7 1.4701 2.3819 -0.0010 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.2447 0.7285 0.0006 33 1 5.5943 3.0612 0.5152 34 1 4.6346 4.5602 0.5133 35 1 4.4542 4.4418 -1.9569 36 1 5.4139 2.9427 -1.9550 37 1 8.0714 6.9325 -2.7068 38 1 9.0232 5.6028 -1.9780 39 1 9.1851 7.5582 -4.6721 40 1 10.6427 6.6977 -4.1213 41 1 9.9905 6.3921 -5.7491 42 1 7.3811 7.4627 -4.9951 43 1 5.8553 9.9364 -6.6323 44 1 6.5174 3.6597 -4.0733 45 1 5.5729 5.1736 -4.0824 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054705886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:07 Heat of formation + Delta-G solvation = 4.922826 kcal Electronic energy + Delta-G solvation = -27096.634999 eV Core-core repulsion = 23118.620875 eV Total energy + Delta-G solvation = -3978.014124 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.07764 -39.90177 -39.07326 -37.79484 -34.83124 -33.97752 -33.03042 -32.43524 -30.67675 -30.36783 -27.93282 -27.75637 -26.64812 -24.47880 -23.83102 -23.56223 -22.04358 -21.25633 -19.33952 -18.89675 -18.15671 -17.84434 -17.53383 -16.96340 -16.56608 -16.04395 -15.76342 -15.50444 -15.21226 -14.72320 -14.52046 -14.05972 -13.95599 -13.69818 -13.16434 -13.02526 -12.88876 -12.62304 -12.50543 -12.41970 -12.14116 -11.99295 -11.98226 -11.62431 -11.54736 -11.15453 -11.09158 -10.95323 -10.80838 -10.50394 -10.29121 -9.97548 -9.88515 -9.70519 -9.60822 -9.41104 -9.04513 -8.29957 -7.10553 -5.87320 -3.17623 1.20062 2.05717 2.50862 2.81409 2.87027 3.33028 3.37608 3.43210 3.44940 3.99270 4.48170 4.49821 4.69388 4.70793 4.79779 4.80842 4.83056 4.94273 5.10510 5.14483 5.17011 5.24544 5.31761 5.38429 5.48596 5.57398 5.61171 5.72864 5.76150 5.85243 5.90260 5.92200 6.15145 6.22712 6.31120 6.33104 6.49030 6.57654 6.71351 6.71548 6.89314 7.60482 7.83012 8.03997 8.30380 8.35390 9.42653 9.97070 10.31685 11.34715 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011479 B = 0.002886 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.549163 B = 9699.689646 C =11430.568654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.285 6.285 3 C 0.207 3.793 4 C -0.235 4.235 5 C 0.006 3.994 6 C -0.025 4.025 7 C -0.134 4.134 8 C 0.528 3.472 9 O -0.557 6.557 10 N -0.605 5.605 11 C 0.115 3.885 12 C -0.114 4.114 13 H 0.079 0.921 14 C -0.131 4.131 15 C 0.172 3.828 16 H 0.070 0.930 17 N -0.712 5.712 18 C -0.248 4.248 19 H 0.072 0.928 20 C -0.008 4.008 21 N -0.929 5.929 22 Si 0.907 3.093 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.069 3.931 27 O 0.102 5.898 28 N -0.411 5.411 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.178 0.822 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.044 0.956 41 H 0.060 0.940 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.055 0.945 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.357 -15.853 11.340 19.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.192 6.192 3 C 0.009 3.991 4 C -0.257 4.257 5 C -0.058 4.058 6 C -0.064 4.064 7 C -0.174 4.174 8 C 0.317 3.683 9 O -0.436 6.436 10 N -0.337 5.337 11 C -0.008 4.008 12 C -0.134 4.134 13 H 0.097 0.903 14 C -0.189 4.189 15 C 0.059 3.941 16 H 0.088 0.912 17 N -0.353 5.353 18 C -0.379 4.379 19 H 0.090 0.910 20 C -0.204 4.204 21 N -0.576 5.576 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.057 4.057 27 O 0.041 5.959 28 N -0.137 5.137 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.196 0.804 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.223 0.777 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.411 -15.576 11.778 19.823 hybrid contribution -0.421 -0.128 -0.766 0.883 sum -3.833 -15.704 11.012 19.560 Atomic orbital electron populations 1.23059 0.76895 1.03998 1.02399 1.86180 1.22544 1.21005 1.89445 1.22027 0.90969 0.85699 1.00423 1.21792 0.94244 0.95693 1.13925 1.24388 0.88317 0.93231 0.99852 1.19959 0.88435 1.00522 0.97468 1.21609 0.96761 1.01744 0.97335 1.20007 0.85475 0.80281 0.82554 1.90682 1.64847 1.57428 1.30656 1.48442 1.26746 1.52442 1.06084 1.22317 0.85672 0.95721 0.97060 1.22649 0.96913 0.99475 0.94326 0.90303 1.21549 0.98040 0.98815 1.00522 1.21206 0.89762 0.89918 0.93185 0.91209 1.42459 1.53629 1.01511 1.37737 1.19211 1.18838 0.92539 1.07264 0.91011 1.24747 1.00606 0.95409 0.99670 1.69644 1.47691 0.97115 1.43146 0.86210 0.80970 0.77000 0.82080 1.21666 1.21765 1.20689 1.23324 1.01307 0.98902 0.82171 1.84827 1.12297 1.29946 1.68784 1.74146 1.15768 0.96696 1.27124 0.92313 0.92184 0.87721 0.80409 0.87367 0.88081 0.88015 0.88432 0.91150 0.91240 0.91188 0.93646 0.92099 0.77718 0.93336 0.92651 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.73 101.05 1.08 1.33 16 2 O -0.29 -3.15 10.57 -18.82 -0.20 -3.35 16 3 C 0.21 2.50 8.01 -16.65 -0.13 2.37 16 4 C -0.23 -2.41 11.10 -39.23 -0.44 -2.85 16 5 C 0.01 0.06 6.73 -35.37 -0.24 -0.18 16 6 C -0.03 -0.25 5.07 -27.88 -0.14 -0.39 16 7 C -0.13 -1.49 4.87 -27.88 -0.14 -1.63 16 8 C 0.53 7.87 7.85 -10.98 -0.09 7.79 16 9 O -0.56 -9.74 16.24 5.55 0.09 -9.65 16 10 N -0.60 -9.38 3.32 -170.38 -0.57 -9.95 16 11 C 0.11 1.79 6.36 -2.41 -0.02 1.77 16 12 C -0.11 -1.67 3.53 -88.35 -0.31 -1.99 16 13 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 14 C -0.13 -1.97 8.85 37.16 0.33 -1.65 16 15 C 0.17 2.97 3.37 -66.09 -0.22 2.75 16 16 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 17 N -0.71 -15.95 4.61 -51.65 -0.24 -16.18 16 18 C -0.25 -6.29 9.98 -15.06 -0.15 -6.44 16 19 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 21 N -0.93 -26.65 13.06 55.49 0.72 -25.92 16 22 Si 0.91 21.37 29.55 -169.99 -5.02 16.34 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.07 1.07 6.22 -3.07 -0.02 1.05 16 27 O 0.10 1.29 11.19 17.06 0.19 1.48 16 28 N -0.41 -5.44 11.54 30.38 0.35 -5.09 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.18 1.37 8.06 -52.48 -0.42 0.95 16 33 H 0.11 0.96 8.10 -51.93 -0.42 0.54 16 34 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 35 H 0.10 1.16 8.14 -51.92 -0.42 0.74 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.22 7.99 -51.93 -0.41 0.81 16 38 H 0.07 1.03 8.03 -51.93 -0.42 0.62 16 39 H 0.07 1.23 6.38 -51.93 -0.33 0.90 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.39 9.37 6.10 -40.82 -0.25 9.12 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 1.38 8.05 -51.93 -0.42 0.97 16 LS Contribution 377.91 15.07 5.70 5.70 Total: -1.00 -31.20 377.91 -6.41 -37.61 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -6.87 Total: 7.38 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -0.57 Total: 1.65 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.27 Total: -57.14 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.08 Total: -11.53 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.20 -6.41 -37.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054705886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.532 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds