Wall clock time and date at job start Tue Mar 31 2020 14:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35711 * 116.99717 * 2 1 4 4 C 1.41937 * 126.87730 * 180.30141 * 3 2 1 5 5 C 1.35272 * 103.95911 * 180.11433 * 4 3 2 6 6 C 1.50698 * 126.71199 * 179.87865 * 5 4 3 7 7 C 1.53006 * 109.47184 * 89.70994 * 6 5 4 8 8 C 1.50698 * 109.47184 * 180.02562 * 7 6 5 9 9 O 1.21282 * 120.00025 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00035 * 179.97438 * 8 7 6 11 11 C 1.47022 * 125.64861 * 0.03165 * 10 8 7 12 12 C 1.54324 * 107.27292 * 181.02155 * 11 10 8 13 13 H 1.08999 * 110.71720 * 263.82814 * 12 11 10 14 14 N 1.46496 * 110.72074 * 140.73289 * 12 11 10 15 15 C 1.36934 * 120.00098 * 86.45445 * 14 12 11 16 16 H 1.08002 * 119.99975 * 359.97438 * 15 14 12 17 17 C 1.38812 * 120.00023 * 179.97438 * 15 14 12 18 18 N 1.31614 * 120.00290 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00072 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47113 * 89.99737 * 19 17 15 21 21 H 1.48494 * 109.47317 * 210.00033 * 19 17 15 22 22 H 1.48507 * 109.47046 * 330.00225 * 19 17 15 23 23 C 1.55161 * 102.93965 * 22.19104 * 12 11 10 24 24 H 1.08999 * 111.00275 * 82.61407 * 23 12 11 25 25 C 1.53001 * 111.00085 * 206.42747 * 23 12 11 26 26 C 1.47425 * 125.64734 * 179.71911 * 10 8 7 27 27 O 1.34090 * 106.57986 * 359.61444 * 5 4 3 28 28 N 1.20912 * 111.71737 * 0.26630 * 27 5 4 29 29 H 1.09001 * 109.47286 * 299.99911 * 1 2 3 30 30 H 1.08998 * 109.47129 * 60.00168 * 1 2 3 31 31 H 1.08996 * 109.46935 * 180.02562 * 1 2 3 32 32 H 1.07999 * 128.02367 * 0.02804 * 4 3 2 33 33 H 1.09001 * 109.46665 * 329.71383 * 6 5 4 34 34 H 1.08993 * 109.47304 * 209.70939 * 6 5 4 35 35 H 1.09001 * 109.46801 * 300.00442 * 7 6 5 36 36 H 1.09001 * 109.46998 * 60.00038 * 7 6 5 37 37 H 1.09008 * 109.88051 * 300.43822 * 11 10 8 38 38 H 1.09001 * 109.88061 * 61.60081 * 11 10 8 39 39 H 0.97000 * 119.99881 * 266.44744 * 14 12 11 40 40 H 0.96999 * 120.00361 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.47261 * 59.99884 * 25 23 12 42 42 H 1.09007 * 109.46875 * 180.02562 * 25 23 12 43 43 H 1.09003 * 109.47083 * 299.99613 * 25 23 12 44 44 H 1.08995 * 110.36838 * 274.74855 * 26 10 8 45 45 H 1.08998 * 110.36491 * 37.07464 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 3.4433 1.4528 -0.0060 5 6 3.5396 2.8021 -0.0006 6 6 4.8087 3.6147 -0.0009 7 6 5.2379 3.8896 -1.4435 8 6 6.5074 4.7017 -1.4438 9 8 7.0187 5.0281 -0.3936 10 7 7.0750 5.0645 -2.6111 11 6 6.5640 4.7380 -3.9504 12 6 7.5498 5.3369 -4.9756 13 1 7.2026 6.3106 -5.3211 14 7 7.7391 4.4250 -6.1065 15 6 6.8787 4.4665 -7.1710 16 1 6.0603 5.1713 -7.1767 17 6 7.0585 3.6029 -8.2427 18 7 8.0555 2.7437 -8.2356 19 14 5.8844 3.6590 -9.6946 20 1 6.3925 4.6212 -10.7052 21 1 5.7848 2.3082 -10.3032 22 1 4.5423 4.0925 -9.2294 23 6 8.8593 5.4801 -4.1557 24 1 9.4044 4.5369 -4.1223 25 6 9.7387 6.5988 -4.7180 26 6 8.3077 5.8600 -2.7565 27 8 2.2849 3.2752 -0.0009 28 7 1.4699 2.3819 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 4.2447 0.7288 -0.0119 33 1 5.5946 3.0611 0.5128 34 1 4.6349 4.5601 0.5129 35 1 5.4117 2.9442 -1.9573 36 1 4.4519 4.4432 -1.9572 37 1 6.5124 3.6562 -4.0739 38 1 5.5753 5.1763 -4.0870 39 1 8.4740 3.7919 -6.1012 40 1 8.1808 2.1400 -8.9844 41 1 9.1957 7.5430 -4.6772 42 1 10.6500 6.6774 -4.1251 43 1 9.9971 6.3726 -5.7525 44 1 8.0794 6.9249 -2.7124 45 1 9.0253 5.5927 -1.9809 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054705889.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:10 Heat of formation + Delta-G solvation = 1.065016 kcal Electronic energy + Delta-G solvation = -26914.503490 eV Core-core repulsion = 22936.322079 eV Total energy + Delta-G solvation = -3978.181411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.07508 -39.94871 -39.05488 -37.75834 -34.85651 -34.12172 -33.03908 -32.55157 -30.83353 -30.46979 -27.91257 -27.56862 -26.73731 -24.56777 -23.89632 -23.55616 -21.59917 -21.21349 -20.00824 -18.99987 -18.14440 -17.85192 -17.17900 -16.96376 -16.72365 -16.20652 -15.75690 -15.54336 -15.22947 -15.00076 -14.31645 -13.99158 -13.94557 -13.61040 -13.19420 -13.11507 -12.94216 -12.72678 -12.53182 -12.41212 -12.33191 -12.12382 -12.05570 -11.61272 -11.56816 -11.18930 -11.11356 -11.03317 -10.78913 -10.65699 -10.30430 -10.01783 -9.93877 -9.78577 -9.63518 -9.41185 -9.05266 -8.39815 -7.14821 -5.89924 -3.21032 1.19880 2.06967 2.52600 2.73411 2.85229 3.23878 3.36172 3.42225 3.43395 3.99863 4.43294 4.50005 4.66882 4.71373 4.77251 4.81980 4.84899 4.92770 5.07127 5.11065 5.16909 5.18615 5.23928 5.38489 5.51459 5.58520 5.59260 5.68467 5.74036 5.78908 5.82520 5.87192 5.95687 6.15179 6.21171 6.32217 6.43076 6.49592 6.56981 6.73454 6.82051 7.58465 7.72836 8.03863 8.25368 8.28323 9.39649 9.93043 10.27795 11.31865 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009598 B = 0.003059 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.532676 B = 9151.153303 C =11582.318217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.284 6.284 3 C 0.208 3.792 4 C -0.232 4.232 5 C 0.003 3.997 6 C -0.024 4.024 7 C -0.136 4.136 8 C 0.529 3.471 9 O -0.556 6.556 10 N -0.611 5.611 11 C 0.070 3.930 12 C 0.176 3.824 13 H 0.066 0.934 14 N -0.711 5.711 15 C -0.249 4.249 16 H 0.072 0.928 17 C -0.007 4.007 18 N -0.929 5.929 19 Si 0.907 3.093 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C -0.113 4.113 24 H 0.084 0.916 25 C -0.134 4.134 26 C 0.114 3.886 27 O 0.100 5.900 28 N -0.412 5.412 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.179 0.821 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.387 0.613 40 H 0.257 0.743 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.223 0.291 16.301 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.191 6.191 3 C 0.011 3.989 4 C -0.254 4.254 5 C -0.061 4.061 6 C -0.062 4.062 7 C -0.176 4.176 8 C 0.318 3.682 9 O -0.436 6.436 10 N -0.344 5.344 11 C -0.056 4.056 12 C 0.064 3.936 13 H 0.084 0.916 14 N -0.351 5.351 15 C -0.380 4.380 16 H 0.090 0.910 17 C -0.204 4.204 18 N -0.576 5.576 19 Si 0.737 3.263 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.206 1.206 23 C -0.133 4.133 24 H 0.102 0.898 25 C -0.192 4.192 26 C -0.009 4.009 27 O 0.040 5.960 28 N -0.139 5.139 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.197 0.803 33 H 0.127 0.873 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.221 0.779 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.289 0.560 16.743 18.691 hybrid contribution -0.165 -0.863 -1.007 1.337 sum -8.454 -0.304 15.736 17.866 Atomic orbital electron populations 1.23059 0.76901 1.04047 1.02331 1.86195 1.22541 1.20962 1.89372 1.22029 0.90980 0.85688 1.00248 1.21834 0.94315 0.95766 1.13437 1.24360 0.88263 0.93264 1.00190 1.19944 0.88532 1.00409 0.97363 1.21625 0.96480 1.02077 0.97403 1.20060 0.85623 0.80033 0.82495 1.90682 1.64948 1.57228 1.30701 1.48544 1.26518 1.52998 1.06337 1.23393 0.99363 1.01759 0.81054 1.21245 0.91090 0.94138 0.87113 0.91601 1.42352 1.34579 1.41647 1.16562 1.19227 1.06916 1.16027 0.95842 0.90976 1.24759 0.98428 0.98495 0.98699 1.69651 1.31541 1.24152 1.32236 0.86206 0.80352 0.76911 0.82782 1.21582 1.21719 1.20650 1.22663 0.97314 0.99899 0.93451 0.89778 1.21616 0.98527 0.97292 1.01738 1.22315 0.86004 0.95039 0.97564 1.84803 1.12289 1.29990 1.68959 1.74125 1.15712 0.96720 1.27308 0.92348 0.92185 0.87693 0.80326 0.87333 0.88203 0.88036 0.88190 0.90664 0.92148 0.77859 0.93309 0.92825 0.93147 0.91334 0.91579 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.73 101.05 1.08 1.34 16 2 O -0.28 -3.29 10.57 -18.84 -0.20 -3.49 16 3 C 0.21 2.59 8.01 -16.65 -0.13 2.46 16 4 C -0.23 -2.49 11.11 -39.22 -0.44 -2.92 16 5 C 0.00 0.03 6.73 -35.37 -0.24 -0.21 16 6 C -0.02 -0.23 5.07 -27.88 -0.14 -0.37 16 7 C -0.14 -1.47 4.87 -27.88 -0.14 -1.60 16 8 C 0.53 7.43 7.85 -10.99 -0.09 7.34 16 9 O -0.56 -9.13 16.24 5.56 0.09 -9.04 16 10 N -0.61 -8.88 3.32 -170.38 -0.57 -9.44 16 11 C 0.07 1.11 6.24 -3.06 -0.02 1.09 16 12 C 0.18 3.09 3.05 -66.10 -0.20 2.88 16 13 H 0.07 1.17 8.02 -51.93 -0.42 0.75 16 14 N -0.71 -16.00 5.18 -51.65 -0.27 -16.26 16 15 C -0.25 -6.34 9.98 -15.06 -0.15 -6.49 16 16 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 17 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 18 N -0.93 -26.46 13.06 55.49 0.72 -25.74 16 19 Si 0.91 21.25 29.55 -169.99 -5.02 16.22 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 C -0.11 -1.67 3.27 -88.35 -0.29 -1.96 16 24 H 0.08 1.32 8.01 -51.93 -0.42 0.91 16 25 C -0.13 -1.78 9.31 37.16 0.35 -1.43 16 26 C 0.11 1.57 6.38 -2.41 -0.02 1.55 16 27 O 0.10 1.22 11.19 17.05 0.19 1.41 16 28 N -0.41 -5.40 11.54 30.38 0.35 -5.04 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.18 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.11 0.97 8.10 -51.93 -0.42 0.55 16 34 H 0.10 0.93 8.10 -51.93 -0.42 0.51 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.29 8.03 -51.92 -0.42 0.87 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.39 9.39 7.73 -40.82 -0.32 9.08 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.05 0.66 8.07 -51.93 -0.42 0.24 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.07 0.86 7.99 -51.93 -0.41 0.44 16 45 H 0.07 1.01 8.03 -51.93 -0.42 0.59 16 LS Contribution 381.46 15.07 5.75 5.75 Total: -1.00 -30.76 381.46 -6.47 -37.23 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -7.01 Total: 7.02 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -0.51 Total: 1.39 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.24 Total: -56.49 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.08 Total: -11.12 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.76 -6.47 -37.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054705889.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.292 kcal (2) G-P(sol) polarization free energy of solvation -30.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds