Wall clock time and date at job start Tue Mar 31 2020 14:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35711 * 116.99717 * 2 1 4 4 C 1.41937 * 126.87730 * 180.30141 * 3 2 1 5 5 C 1.35272 * 103.95911 * 180.11433 * 4 3 2 6 6 C 1.50698 * 126.71199 * 179.87865 * 5 4 3 7 7 C 1.53006 * 109.47184 * 89.70994 * 6 5 4 8 8 C 1.50698 * 109.47184 * 180.02562 * 7 6 5 9 9 O 1.21282 * 120.00025 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00035 * 179.97438 * 8 7 6 11 11 C 1.47022 * 125.64861 * 0.03165 * 10 8 7 12 12 C 1.54324 * 107.27292 * 181.02155 * 11 10 8 13 13 H 1.08999 * 110.71720 * 263.82814 * 12 11 10 14 14 N 1.46496 * 110.72074 * 140.73289 * 12 11 10 15 15 C 1.36934 * 120.00098 * 86.45445 * 14 12 11 16 16 H 1.08002 * 119.99975 * 359.97438 * 15 14 12 17 17 C 1.38812 * 120.00023 * 179.97438 * 15 14 12 18 18 N 1.31614 * 120.00290 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00072 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47113 * 89.99737 * 19 17 15 21 21 H 1.48494 * 109.47317 * 210.00033 * 19 17 15 22 22 H 1.48507 * 109.47046 * 330.00225 * 19 17 15 23 23 C 1.55161 * 102.93965 * 22.19104 * 12 11 10 24 24 H 1.08999 * 111.00275 * 82.61407 * 23 12 11 25 25 C 1.53001 * 111.00085 * 206.42747 * 23 12 11 26 26 C 1.47425 * 125.64734 * 179.71911 * 10 8 7 27 27 O 1.34090 * 106.57986 * 359.61444 * 5 4 3 28 28 N 1.20912 * 111.71737 * 0.26630 * 27 5 4 29 29 H 1.09001 * 109.47286 * 299.99911 * 1 2 3 30 30 H 1.08998 * 109.47129 * 60.00168 * 1 2 3 31 31 H 1.08996 * 109.46935 * 180.02562 * 1 2 3 32 32 H 1.07999 * 128.02367 * 0.02804 * 4 3 2 33 33 H 1.09001 * 109.46665 * 329.71383 * 6 5 4 34 34 H 1.08993 * 109.47304 * 209.70939 * 6 5 4 35 35 H 1.09001 * 109.46801 * 300.00442 * 7 6 5 36 36 H 1.09001 * 109.46998 * 60.00038 * 7 6 5 37 37 H 1.09008 * 109.88051 * 300.43822 * 11 10 8 38 38 H 1.09001 * 109.88061 * 61.60081 * 11 10 8 39 39 H 0.97000 * 119.99881 * 266.44744 * 14 12 11 40 40 H 0.96999 * 120.00361 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.47261 * 59.99884 * 25 23 12 42 42 H 1.09007 * 109.46875 * 180.02562 * 25 23 12 43 43 H 1.09003 * 109.47083 * 299.99613 * 25 23 12 44 44 H 1.08995 * 110.36838 * 274.74855 * 26 10 8 45 45 H 1.08998 * 110.36491 * 37.07464 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 3.4433 1.4528 -0.0060 5 6 3.5396 2.8021 -0.0006 6 6 4.8087 3.6147 -0.0009 7 6 5.2379 3.8896 -1.4435 8 6 6.5074 4.7017 -1.4438 9 8 7.0187 5.0281 -0.3936 10 7 7.0750 5.0645 -2.6111 11 6 6.5640 4.7380 -3.9504 12 6 7.5498 5.3369 -4.9756 13 1 7.2026 6.3106 -5.3211 14 7 7.7391 4.4250 -6.1065 15 6 6.8787 4.4665 -7.1710 16 1 6.0603 5.1713 -7.1767 17 6 7.0585 3.6029 -8.2427 18 7 8.0555 2.7437 -8.2356 19 14 5.8844 3.6590 -9.6946 20 1 6.3925 4.6212 -10.7052 21 1 5.7848 2.3082 -10.3032 22 1 4.5423 4.0925 -9.2294 23 6 8.8593 5.4801 -4.1557 24 1 9.4044 4.5369 -4.1223 25 6 9.7387 6.5988 -4.7180 26 6 8.3077 5.8600 -2.7565 27 8 2.2849 3.2752 -0.0009 28 7 1.4699 2.3819 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 4.2447 0.7288 -0.0119 33 1 5.5946 3.0611 0.5128 34 1 4.6349 4.5601 0.5129 35 1 5.4117 2.9442 -1.9573 36 1 4.4519 4.4432 -1.9572 37 1 6.5124 3.6562 -4.0739 38 1 5.5753 5.1763 -4.0870 39 1 8.4740 3.7919 -6.1012 40 1 8.1808 2.1400 -8.9844 41 1 9.1957 7.5430 -4.6772 42 1 10.6500 6.6774 -4.1251 43 1 9.9971 6.3726 -5.7525 44 1 8.0794 6.9249 -2.7124 45 1 9.0253 5.5927 -1.9809 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054705889.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:10 Heat of formation + Delta-G solvation = -19.598678 kcal Electronic energy + Delta-G solvation = -26915.399535 eV Core-core repulsion = 22936.322079 eV Total energy + Delta-G solvation = -3979.077456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.96881 -41.13111 -39.86910 -39.01957 -35.87771 -35.68497 -34.00566 -33.79264 -32.49252 -31.43445 -29.08307 -28.61903 -27.76270 -25.93876 -25.27888 -24.45304 -22.92160 -22.09313 -21.34077 -20.12558 -19.07458 -19.02371 -18.74810 -17.89550 -17.75522 -17.38941 -16.70118 -16.56463 -16.45918 -16.03141 -15.71435 -15.31989 -15.04068 -14.86313 -14.59183 -14.34093 -14.08660 -13.81397 -13.58654 -13.45675 -13.16162 -13.10585 -12.98584 -12.86808 -12.82623 -12.79860 -12.45803 -12.21743 -12.08781 -11.99942 -11.93925 -11.64882 -11.36973 -11.04730 -10.87425 -10.54055 -10.31007 -9.60418 -9.02869 -7.92188 -5.21279 0.34247 1.18958 1.51417 1.52095 1.59711 1.62109 1.73984 1.94009 2.21950 2.58770 3.14823 3.39273 3.41806 3.73096 3.84280 3.85500 3.90367 3.93340 4.02048 4.18873 4.21168 4.22762 4.27942 4.38740 4.42432 4.51876 4.57094 4.59021 4.66484 4.75173 4.81475 4.89968 4.94926 4.97271 5.05582 5.15276 5.18978 5.28911 5.36377 5.52390 5.58787 5.92135 6.28861 6.55779 7.13225 7.16489 7.36883 8.09344 8.32542 9.30674 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009598 B = 0.003059 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.532676 B = 9151.153303 C =11582.318217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.297 6.297 3 C 0.195 3.805 4 C -0.235 4.235 5 C 0.010 3.990 6 C -0.015 4.015 7 C -0.130 4.130 8 C 0.530 3.470 9 O -0.578 6.578 10 N -0.614 5.614 11 C 0.085 3.915 12 C 0.168 3.832 13 H 0.068 0.932 14 N -0.722 5.722 15 C -0.237 4.237 16 H 0.080 0.920 17 C -0.069 4.069 18 N -0.967 5.967 19 Si 0.965 3.035 20 H -0.290 1.290 21 H -0.301 1.301 22 H -0.269 1.269 23 C -0.104 4.104 24 H 0.071 0.929 25 C -0.129 4.129 26 C 0.117 3.883 27 O 0.090 5.910 28 N -0.431 5.431 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.134 0.866 32 H 0.199 0.801 33 H 0.118 0.882 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.375 0.625 40 H 0.250 0.750 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.045 0.955 44 H 0.081 0.919 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.926 1.025 17.287 19.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.203 6.203 3 C -0.003 4.003 4 C -0.256 4.256 5 C -0.054 4.054 6 C -0.053 4.053 7 C -0.170 4.170 8 C 0.320 3.680 9 O -0.459 6.459 10 N -0.346 5.346 11 C -0.041 4.041 12 C 0.058 3.942 13 H 0.086 0.914 14 N -0.361 5.361 15 C -0.369 4.369 16 H 0.098 0.902 17 C -0.262 4.262 18 N -0.617 5.617 19 Si 0.795 3.205 20 H -0.217 1.217 21 H -0.228 1.228 22 H -0.193 1.193 23 C -0.124 4.124 24 H 0.090 0.910 25 C -0.187 4.187 26 C -0.006 4.006 27 O 0.031 5.969 28 N -0.159 5.159 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.152 0.848 32 H 0.216 0.784 33 H 0.136 0.864 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.208 0.792 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.064 0.936 44 H 0.099 0.901 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.018 1.339 17.769 19.972 hybrid contribution 0.057 -1.041 -1.217 1.603 sum -8.961 0.298 16.552 18.825 Atomic orbital electron populations 1.23299 0.75386 1.05962 1.02167 1.86185 1.24158 1.20688 1.89290 1.22373 0.91817 0.85865 1.00219 1.22166 0.94231 0.96272 1.12974 1.24490 0.87948 0.93296 0.99621 1.19911 0.88143 1.00640 0.96616 1.21622 0.95066 1.01856 0.98478 1.20516 0.86132 0.79623 0.81751 1.90676 1.65823 1.58140 1.31278 1.48574 1.26771 1.53246 1.06040 1.22995 0.99190 1.00712 0.81205 1.21448 0.93218 0.93128 0.86404 0.91399 1.42467 1.33854 1.42256 1.17523 1.19601 1.06569 1.14684 0.96046 0.90172 1.25457 1.00216 0.99149 1.01381 1.69795 1.33612 1.25526 1.32770 0.85268 0.79170 0.76104 0.79979 1.21702 1.22764 1.19336 1.22565 0.96141 1.00029 0.93664 0.91040 1.21574 0.99375 0.97156 1.00547 1.22332 0.85840 0.95781 0.96621 1.84770 1.12878 1.30020 1.69209 1.74110 1.16370 0.97163 1.28285 0.92216 0.92623 0.84794 0.78381 0.86421 0.87784 0.87417 0.87268 0.92091 0.90999 0.79243 0.94131 0.91474 0.91010 0.93606 0.90080 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.73 113.37 1.22 1.62 16 2 O -0.30 -6.59 10.57 -90.32 -0.95 -7.55 16 3 C 0.19 4.67 8.01 85.79 0.69 5.36 16 4 C -0.23 -4.69 11.11 22.50 0.25 -4.44 16 5 C 0.01 0.19 6.73 25.00 0.17 0.36 16 6 C -0.01 -0.25 5.07 29.85 0.15 -0.10 16 7 C -0.13 -2.53 4.87 29.85 0.15 -2.39 16 8 C 0.53 13.75 7.85 87.66 0.69 14.44 16 9 O -0.58 -17.81 16.24 -3.04 -0.05 -17.85 16 10 N -0.61 -16.59 3.32 -811.35 -2.70 -19.29 16 11 C 0.08 2.53 6.24 86.73 0.54 3.08 16 12 C 0.17 5.69 3.05 46.18 0.14 5.83 16 13 H 0.07 2.29 8.02 -2.39 -0.02 2.27 16 14 N -0.72 -32.37 5.18 -317.33 -1.64 -34.02 16 15 C -0.24 -11.95 9.98 84.03 0.84 -11.11 16 16 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 17 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 18 N -0.97 -56.08 13.06 21.65 0.28 -55.80 16 19 Si 0.96 43.75 29.55 68.60 2.03 45.78 16 20 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 23 C -0.10 -2.94 3.27 -9.32 -0.03 -2.97 16 24 H 0.07 2.22 8.01 -2.39 -0.02 2.20 16 25 C -0.13 -3.21 9.31 71.98 0.67 -2.54 16 26 C 0.12 2.97 6.38 86.93 0.55 3.53 16 27 O 0.09 2.12 11.19 71.17 0.80 2.92 16 28 N -0.43 -11.02 11.54 -172.60 -1.99 -13.01 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.13 1.19 8.14 -2.39 -0.02 1.18 16 32 H 0.20 2.99 8.06 -2.91 -0.02 2.97 16 33 H 0.12 1.82 8.10 -2.39 -0.02 1.80 16 34 H 0.10 1.71 8.10 -2.39 -0.02 1.69 16 35 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.06 2.02 8.03 -2.38 -0.02 2.00 16 38 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.38 18.50 7.73 -92.71 -0.72 17.79 16 40 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 41 H 0.07 1.48 8.07 -2.39 -0.02 1.46 16 42 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.08 1.86 7.99 -2.39 -0.02 1.84 16 45 H 0.08 1.93 8.03 -2.39 -0.02 1.91 16 Total: -1.00 -65.50 381.46 2.54 -62.97 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.28 Total: 28.46 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 6.49 Total: 7.40 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -6.05 Total: -122.12 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.21 Total: -22.48 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -65.50 2.54 -62.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054705889.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.370 kcal (2) G-P(sol) polarization free energy of solvation -65.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds