Wall clock time and date at job start Tue Mar 31 2020 14:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35701 * 117.00277 * 2 1 4 4 C 1.41932 * 126.88582 * 180.02562 * 3 2 1 5 5 C 1.35271 * 103.96381 * 180.02562 * 4 3 2 6 6 C 1.50704 * 126.70745 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47029 * 90.00121 * 6 5 4 8 8 C 1.50697 * 109.46791 * 180.02562 * 7 6 5 9 9 O 1.21279 * 120.00189 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99867 * 179.97438 * 8 7 6 11 11 C 1.47424 * 125.64987 * 179.97438 * 10 8 7 12 12 C 1.54906 * 104.83339 * 204.16656 * 11 10 8 13 13 H 1.09005 * 111.00645 * 81.06711 * 12 11 10 14 14 C 1.53001 * 111.00492 * 204.91721 * 12 11 10 15 15 C 1.55161 * 101.58183 * 322.99074 * 12 11 10 16 16 H 1.08996 * 110.87052 * 153.93609 * 15 12 11 17 17 N 1.46499 * 110.72014 * 277.14034 * 15 12 11 18 18 C 1.36931 * 120.00122 * 199.97573 * 17 15 12 19 19 H 1.08002 * 120.00098 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00429 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99535 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00187 * 180.27849 * 20 18 17 23 23 H 1.48501 * 109.46922 * 269.71949 * 22 20 18 24 24 H 1.48496 * 109.47354 * 29.72145 * 22 20 18 25 25 H 1.48501 * 109.47428 * 149.72253 * 22 20 18 26 26 C 1.47019 * 125.64918 * 0.02562 * 10 8 7 27 27 O 1.34081 * 106.58041 * 0.26004 * 5 4 3 28 28 N 1.20914 * 111.72112 * 359.52732 * 27 5 4 29 29 H 1.09000 * 109.47375 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47189 * 299.99776 * 1 2 3 31 31 H 1.09005 * 109.47419 * 59.99961 * 1 2 3 32 32 H 1.08000 * 128.01390 * 359.97438 * 4 3 2 33 33 H 1.08996 * 109.46798 * 329.99476 * 6 5 4 34 34 H 1.08997 * 109.46684 * 209.99988 * 6 5 4 35 35 H 1.08992 * 109.47472 * 59.99688 * 7 6 5 36 36 H 1.08999 * 109.46777 * 299.99606 * 7 6 5 37 37 H 1.09002 * 110.36622 * 323.00423 * 11 10 8 38 38 H 1.09002 * 110.36589 * 85.21357 * 11 10 8 39 39 H 1.08997 * 109.47614 * 172.19681 * 14 12 11 40 40 H 1.09002 * 109.46883 * 292.19970 * 14 12 11 41 41 H 1.09007 * 109.46738 * 52.19497 * 14 12 11 42 42 H 0.97001 * 119.99790 * 19.97089 * 17 15 12 43 43 H 0.97005 * 119.99717 * 180.02562 * 21 20 18 44 44 H 1.09004 * 109.88100 * 59.48152 * 26 10 8 45 45 H 1.09000 * 110.01000 * 298.39632 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4433 1.4527 -0.0005 5 6 3.5396 2.8020 0.0003 6 6 4.8088 3.6145 -0.0003 7 6 5.2370 3.8905 -1.4430 8 6 6.5065 4.7024 -1.4436 9 8 7.0181 5.0287 -0.3935 10 7 7.0733 5.0661 -2.6111 11 6 8.3088 5.8571 -2.7568 12 6 8.1965 6.5140 -4.1551 13 1 7.5681 7.4039 -4.1195 14 6 9.5801 6.8447 -4.7184 15 6 7.5171 5.3859 -4.9756 16 1 6.9592 5.7990 -5.8160 17 7 8.5096 4.4145 -5.4421 18 6 8.2176 3.5893 -6.4951 19 1 7.2558 3.6548 -6.9820 20 6 9.1578 2.6685 -6.9368 21 7 10.3302 2.5890 -6.3437 22 14 8.7624 1.5481 -8.3782 23 1 8.1448 0.2945 -7.8759 24 1 7.8154 2.2343 -9.2933 25 1 10.0126 1.2247 -9.1114 26 6 6.5613 4.7405 -3.9502 27 8 2.2850 3.2751 0.0070 28 7 1.4700 2.3819 0.0010 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 4.2446 0.7286 -0.0006 33 1 5.5950 3.0605 0.5125 34 1 4.6354 4.5596 0.5143 35 1 4.4507 4.4444 -1.9558 36 1 5.4104 2.9454 -1.9576 37 1 8.3634 6.6216 -1.9818 38 1 9.1829 5.2074 -2.7100 39 1 9.4820 7.1752 -5.7524 40 1 10.0339 7.6382 -4.1248 41 1 10.2102 5.9560 -4.6793 42 1 9.3736 4.3560 -5.0051 43 1 10.9874 1.9458 -6.6526 44 1 5.5573 5.1470 -4.0722 45 1 6.5429 3.6596 -4.0899 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054705893.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:14 Heat of formation + Delta-G solvation = 4.655928 kcal Electronic energy + Delta-G solvation = -27105.830990 eV Core-core repulsion = 23127.805293 eV Total energy + Delta-G solvation = -3978.025697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.07563 -39.90443 -39.06513 -37.79970 -34.82532 -33.98201 -33.02929 -32.43983 -30.68002 -30.37100 -27.92551 -27.75814 -26.64905 -24.47831 -23.83522 -23.55977 -22.03956 -21.24899 -19.33932 -18.90118 -18.14769 -17.84678 -17.54899 -16.95737 -16.58007 -16.01507 -15.74235 -15.41579 -15.31895 -14.73896 -14.53561 -14.12868 -13.88294 -13.56734 -13.19504 -13.09563 -12.88938 -12.65867 -12.50927 -12.34095 -12.13576 -12.05060 -11.94642 -11.62456 -11.54955 -11.15770 -11.09278 -10.96062 -10.81142 -10.50370 -10.29702 -9.97931 -9.87805 -9.70518 -9.60139 -9.40839 -9.05155 -8.29977 -7.11125 -5.88074 -3.18265 1.20042 2.06842 2.51967 2.81534 2.86913 3.32831 3.36733 3.42589 3.44178 3.99788 4.48688 4.49415 4.68982 4.72060 4.80565 4.81576 4.83137 4.95637 5.11888 5.14191 5.17997 5.23592 5.32091 5.41494 5.48337 5.60511 5.60668 5.72366 5.76248 5.85354 5.90386 5.92290 6.15097 6.22532 6.31069 6.33248 6.48840 6.57761 6.71427 6.72916 6.89154 7.59879 7.83033 8.03383 8.29708 8.35384 9.41922 9.96449 10.31132 11.33943 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011028 B = 0.002963 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.461113 B = 9447.539060 C =11401.771937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.284 6.284 3 C 0.208 3.792 4 C -0.232 4.232 5 C 0.004 3.996 6 C -0.025 4.025 7 C -0.134 4.134 8 C 0.528 3.472 9 O -0.556 6.556 10 N -0.605 5.605 11 C 0.115 3.885 12 C -0.114 4.114 13 H 0.079 0.921 14 C -0.131 4.131 15 C 0.172 3.828 16 H 0.070 0.930 17 N -0.712 5.712 18 C -0.247 4.247 19 H 0.072 0.928 20 C -0.008 4.008 21 N -0.929 5.929 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.281 1.281 25 H -0.291 1.291 26 C 0.069 3.931 27 O 0.099 5.901 28 N -0.413 5.413 29 H 0.105 0.895 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.180 0.820 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.045 0.955 41 H 0.069 0.931 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.055 0.945 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.994 2.228 11.385 18.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.191 6.191 3 C 0.011 3.989 4 C -0.254 4.254 5 C -0.060 4.060 6 C -0.063 4.063 7 C -0.175 4.175 8 C 0.317 3.683 9 O -0.436 6.436 10 N -0.337 5.337 11 C -0.008 4.008 12 C -0.134 4.134 13 H 0.097 0.903 14 C -0.189 4.189 15 C 0.059 3.941 16 H 0.088 0.912 17 N -0.353 5.353 18 C -0.378 4.378 19 H 0.090 0.910 20 C -0.205 4.205 21 N -0.576 5.576 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.207 1.207 25 H -0.218 1.218 26 C -0.057 4.057 27 O 0.039 5.961 28 N -0.140 5.140 29 H 0.123 0.877 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.197 0.803 33 H 0.127 0.873 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.223 0.777 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.961 2.379 11.822 19.216 hybrid contribution 0.384 -1.376 -0.774 1.625 sum -14.577 1.002 11.047 18.318 Atomic orbital electron populations 1.23055 0.76934 1.04034 1.02301 1.86196 1.22511 1.20983 1.89365 1.22031 0.90986 0.85675 1.00239 1.21851 0.94312 0.95811 1.13399 1.24376 0.88225 0.93274 1.00090 1.19953 0.88499 1.00401 0.97445 1.21607 0.96462 1.02040 0.97343 1.20006 0.85620 0.80141 0.82543 1.90681 1.65180 1.57035 1.30712 1.48437 1.26201 1.52982 1.06075 1.22268 0.87098 0.94313 0.97082 1.22612 0.98451 0.97996 0.94319 0.90309 1.21547 0.95305 1.01533 1.00516 1.21206 0.90530 0.89168 0.93166 0.91196 1.42457 1.14965 1.40257 1.37652 1.19214 0.99504 1.11891 1.07205 0.91011 1.24750 0.96176 0.99884 0.99657 1.69658 1.06050 1.38704 1.43204 0.86207 0.77040 0.80849 0.82149 1.21691 1.20683 1.21760 1.23317 0.98067 1.02157 0.82183 1.84796 1.12310 1.29998 1.69009 1.74128 1.15721 0.96714 1.27428 0.87702 0.92339 0.92237 0.80297 0.87279 0.88209 0.88381 0.88069 0.91247 0.91195 0.92092 0.93643 0.91195 0.77721 0.93352 0.92627 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.73 101.05 1.08 1.34 16 2 O -0.28 -3.26 10.56 -18.81 -0.20 -3.46 16 3 C 0.21 2.57 8.01 -16.65 -0.13 2.44 16 4 C -0.23 -2.53 11.10 -39.23 -0.44 -2.96 16 5 C 0.00 0.04 6.73 -35.36 -0.24 -0.20 16 6 C -0.02 -0.24 5.07 -27.88 -0.14 -0.38 16 7 C -0.13 -1.49 4.87 -27.88 -0.14 -1.63 16 8 C 0.53 7.88 7.85 -10.99 -0.09 7.79 16 9 O -0.56 -9.75 16.24 5.56 0.09 -9.66 16 10 N -0.60 -9.38 3.33 -170.53 -0.57 -9.95 16 11 C 0.11 1.79 6.35 -2.53 -0.02 1.77 16 12 C -0.11 -1.68 3.51 -88.47 -0.31 -1.99 16 13 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.13 -1.97 8.85 37.16 0.33 -1.64 16 15 C 0.17 2.97 3.37 -66.10 -0.22 2.75 16 16 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 17 N -0.71 -15.89 4.61 -51.65 -0.24 -16.13 16 18 C -0.25 -6.26 9.98 -15.06 -0.15 -6.41 16 19 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 21 N -0.93 -26.53 13.06 55.49 0.72 -25.80 16 22 Si 0.91 21.26 29.55 -169.99 -5.02 16.24 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 C 0.07 1.07 6.23 -3.07 -0.02 1.05 16 27 O 0.10 1.19 11.19 17.07 0.19 1.38 16 28 N -0.41 -5.32 11.54 30.38 0.35 -4.97 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.18 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.11 1.05 8.10 -51.93 -0.42 0.63 16 34 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.07 1.04 8.04 -51.93 -0.42 0.62 16 38 H 0.07 1.21 7.99 -51.93 -0.41 0.79 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 1.23 6.38 -51.92 -0.33 0.90 16 42 H 0.39 9.33 6.10 -40.82 -0.25 9.09 16 43 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 1.37 8.04 -51.93 -0.42 0.96 16 LS Contribution 377.89 15.07 5.69 5.69 Total: -1.00 -30.97 377.89 -6.41 -37.39 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.87 Total: 7.63 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -0.57 Total: 1.62 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: 0.27 Total: -56.85 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.97 -6.41 -37.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054705893.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.042 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds